mRNA_H-paniculata_contig1977.5031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1977.5031.1
Unique NamemRNA_H-paniculata_contig1977.5031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 317 bits (813), Expect = 8.040e-94
Identity = 218/669 (32.59%), Postives = 333/669 (49.78%), Query Frame = 1
Query:   16 KANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGT--RDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR-----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            K+ G Q+K LR+  G E+T  EF+ F  +  I+ E +V  TP+QNGVAER  +T+ ET RS +  A +  ++W EA   AVY  NR+ T+   G  P E W    PK+DHLR+FGCT Y      +R+KLD K    + LG+  ++  YR+Y  +   V  SR+V F+E N           DG   R +E     P    +  +   R E   R+ K         +  G    VA     SNPT      EPK     L + +  KW+ AM     +      W   +   LP G KA+ +KW+ K K+  +G+  R+KARLVAQ FSQ  G D+ ET + V    ++ T+ + A ++  +L  M V  A+LN  ++EE++++ P  F    ++   V +L +  Y LKQS R WN  LD+ L  +G  ++T DPC+  +    GE   ++A+YVD +++A   +K + + K  ++  F +KD+G L+  LG+ + +    G I + Q  Y   VLK+   +  + V TPV+   +++      +  +P           +++  VG+L+  ST TRPDIAYAV+  AR    P ++ +                              F DADWA D  DRKS +GY+ +++G A+SW S+KQ  V
Sbjct:    4 KSTGRQLKVLRTDNGGEYTSSEFQDFLKKEGIRHELTVPKTPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSE---RLRKPP-------DYYGEWVTVA-----SNPTT-----EPKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVE---LPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKEH-LVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPK----------QFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCV 635          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 322 bits (826), Expect = 1.330e-93
Identity = 221/683 (32.36%), Postives = 359/683 (52.56%), Query Frame = 1
Query:   10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEE-----------NFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETS-RILKRARARENREENSGSAARVAKVEDTSNPTRAV--SEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCR--------------------------EDFRFV---DADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            + K +GL +K +RS +G EFT  EF+ FC ++ I++  +V  +PQQNGVAER  RT+ +  RS +   N+   +W EA   AVY LNR+ TR   G  P E W    P + HLRVFG  AY     + R KLDDK+   +F+G+  +S  Y++Y P+  ++ +SR+V FDEE           N +     + +    +D++   + P  +P V +  +     + R ++RAR+  +  E+          E   N T     ++ EP     A++++   KWR AM     +  K  TWE      LP G KAI  KW+ K K   +G + RYKARLVA+ +SQ  G D+ E  A VA + T+  + SLA ++ +++  M V  A+LN  ++EE++++ P  +    ++   V RL+K  Y LKQ+ R WN+ +D +L   G  +   +  L +++ + G+  ++V +YVD L+ A  +++ +D+FK +++  F M D+G ++  LGI+V++      I ISQ  Y +E++K+   D+C  V TPVE  +++   +  +K            ++T ++ +VG+L    T TRPDI YA    +R ME+P                             D++ V   D+DWA D++DRKSTTG++  +   A +W S+KQ +V
Sbjct:  230 VEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEEGEWDFSSHEDFNSIMPTEEEEQPTAEQDVQQEPTTPLTSPTVVQDASPPSFLNERSVERARSLGDIYED---------TERLENLTLLCLFADCEPVTFEEAVQSK---KWRDAMDEEIKSIEKNDTWELTS---LPKGHKAIGVKWVYKAKKNSKGEIERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHAL-YTKMKDGDI-LIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVKQLEDG--IFISQEGYAKEIIKKFKMDDCNPVNTPVECGIKLSKHDEDEKV-----------DTTMFKSLVGSLRYL-TCTRPDILYATGLISRYMENPTTTHLKTARRILRYLKGTINFGLFYSTSNDYKLVGYSDSDWAGDIDDRKSTTGFVFFMGDTAFTWMSKKQPIV 880          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A151R6U8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R6U8_CAJCA)

HSP 1 Score: 326 bits (836), Expect = 1.740e-93
Identity = 219/676 (32.40%), Postives = 338/676 (50.00%), Query Frame = 1
Query:   25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPT--------------RAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            G ++K LR+  G E+   +F  FC +  IK++F+VA+TPQQNGVAER  RT+ E TR+ +  A +   +W EA + A Y +NR+ +       P E W+        L VFGC  YVM+ SQ+R KLD K+   +FLG+ ++   YR++ P  + V +SR+V F E    T    + E+D T          S+     +S+   ++TS   +    +E  E+N G   R  +   T  P+                  E EP     AL++ +  +W AAM        +  TWE  D   LP G KAI  KW+ K K      V RY+ARLV + ++Q  G DF E  + V  ++T+  V ++    +  LE + V  A+L+  ++EE+++  P  F    ++   V RL K  Y LKQ+ R W    D F++ +G  R ++D C  ++R +  +  IL+    D LV+    +++ + K  ++  F MKDLG  +++LG+ + RDR N  I +SQ +Y+ +VL+R    +C+ + TP+    ++ +S S     E   +  V      Y   VG+LM A   TRPDIA AV   +R M DP RE +                             +VD+D+A D++ RKSTTGY+  L GGA+SW S+ Q +V
Sbjct:  491 GKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAE----TELQKEQENDST------IKDTSIVEIGGKSKE--DDTSEAEQEHDEQEPNEDNDGDVRRTTR--QTKKPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELVD---LPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKEN-LVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRV-----PYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSEFFVRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVV 1143          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A5CBM1_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5CBM1_VITVI)

HSP 1 Score: 324 bits (831), Expect = 7.760e-93
Identity = 221/654 (33.79%), Postives = 338/654 (51.68%), Query Frame = 1
Query:   25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRAR--GEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEE-------------EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            GL++K LRS  G E+    F ++CA   I+ E ++  TPQQNGVAER  RT+ E  RS  + A +   +W +A   A Y +NR  + P    LP E W     K  HL+VFGC +YV   S  R KLD K+ +  F+G+ ++   YR +  +N+ +  SRNV F+E+  +      +  D T +I+   S       +T S  +  GEE          +EN       +  V +V  +S  TR                  EP+C   AL+++ + KW  AM     + +   TWE  +   LPVG KA+  KW+ + K + +GS  RYKARLV + F Q  G D+ E  + V  MST+  V  +    +  LE + V  A+L+  +EE+L++  P  F    ++   V +LRK  Y LKQ+ R W    D+F+  IG +R   D C      +     I++ +YVD ++I     EK++  K  +S +F MKDLG+  ++LG+ + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+    ++   +S     E + +  V      Y   +G+LM A   TRPDIA+AV   +R M  P ++ +     +VDAD+A D++ RKSTTG++  L G AISW S  Q++V
Sbjct:  504 GLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ-VMYKDRSTVTSDVT-EIDQKKSEFVNLDELTESTVQKGGEED---------KENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSXPGKQHWEAVEGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIV 1134          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A438JDY0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JDY0_VITVI)

HSP 1 Score: 315 bits (806), Expect = 1.390e-92
Identity = 222/673 (32.99%), Postives = 340/673 (50.52%), Query Frame = 1
Query:   25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSV---TPAVTRS--RARGEE-----TSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            GL++K LRS  G E+    F ++CA   I+ E ++  TPQQNGVAER  RT+ E  RS  + A +   +W +A   A Y +NR  + P    LP E W     K  HL+VFGC +YV   S  R KLD K+ +  F+G+ ++   YR +  +N+ +  SRNV F+E+     + G+L    T D+  +    S       +T S  + RGEE      S++  R    E R  +S +     +     N        EP+C   AL+++ + KW  AM     + +   TWE  +   LPVG KA+  KW+ +   + +GS  RYKARLV + F Q  G D+ E  + V  MST+  V  +    +  LE + V  A+L+  +EE+L++  P  F    ++   V +LRK  Y LKQ+ R W    D+F+  IG +R   D C      +     I++ +YVD ++IA    EK++  K  +S +F MKDLG+  ++LG+ + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+    ++   +S     E + +  V      Y   +G+LM A   TRPDIA+AV   +R M  P ++ +                             +VDAD+A D++ RKSTTG++  L G AISW S  Q++V
Sbjct:    7 GLKVKCLRSDNGGEYIDGGFNEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ---VMYKGRLTV--TSDVTEIDQKKSEFVNLDELTESTVQKRGEEDKENVNSKVDLRTPVVEVRR-SSRNIRPPQRYSPVLNYLLLTDGGEPECYNEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRINNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIV 661          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A5B7BAK4_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAK4_DAVIN)

HSP 1 Score: 321 bits (823), Expect = 1.690e-91
Identity = 218/685 (31.82%), Postives = 340/685 (49.64%), Query Frame = 1
Query:   10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIE--GLFSAPSVTPAVTRSRARGEETSRI-----------LKRARARENREENSGSAARVAKVEDTSNPTR---AVSEE-EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            +    GL++K LRS  G E+T +EF++FCA N I+ E ++  TPQQNGVAER  RT+ E  RS  I A +   +W +A   A Y +NR  + P + GLP E W      L HL+VFGC +YV   S  R KLD K+    F+G+  D   YR +  +N+ +  SR+V F+E+       G   ++     E  G       + +   SR +    + I           L+R             ++RV+K     +P+     +S+  EP+C   AL+  ++ KW +AM     + +   TW+  +   LP G KA+  KW+ + K + +GS  RYKARLV + F Q  G D+ E  + V  M+T+  V  +    +  LE + V  A+L+  +EE++++K P  F    ++   + +L K  Y LKQ+ R W    D F+   G  R   D C    R +     I++ +YVD ++IA    +++   K+ +S +F MKDLG+  ++LG+ + RDR  GT+ +SQ +Y++ V+ R    + + V TP+     +   +S     E   +  V      Y   VG+LM A   TRPDIA+AV   +R M +P ++ +                             +VD+D A DV++RKSTTGY+  L G A+SW SR Q++V
Sbjct:  530 VENETGLKIKCLRSDNGGEYTDKEFKEFCATNGIRMEKTIPKTPQQNGVAERMNRTLNERGRSMRIHAGLPKMFWADAVNTAAYLINRGPSVPLDDGLPEEAWSGKEVNLSHLKVFGCVSYVHIDSDARSKLDPKSKKCTFIGYGTDEFGYRFWDDQNRKITRSRDVIFNEKVLYKDRSGAESNNADTHAEKTGFVELEEPSESEVHSRVQNNPENIIPQVEPVTPATGLRR-------------SSRVSKAPQCYSPSLYYLLLSDSGEPECYDEALQVGDSAKWESAMQDEMDSLMSNQTWKLTE---LPKGKKALHNKWVYRIKEEHDGS-KRYKARLVVKGFQQKEGVDYTEIFSPVVKMTTIRLVLGIVAAENLHLEQLDVKTAFLHGDLEEDIYMKQPQGFTAPGKE-GLICKLAKSLYGLKQAPRQWYKKFDGFMCTNGFTRCQADHCCYMKRFDNDY--IILLLYVDDMLIAGSSIQEIKNLKNQLSKQFAMKDLGAAKQILGMRISRDRTAGTLKLSQAEYVKRVISRFSMQDAKPVSTPLASHFRLTKDQSPKTEEEQGYMQRV-----PYASAVGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKKHWEAIKWILRYLKGTTDTALCFDEADMVLQGYVDSDLAGDVDNRKSTTGYVFTLGGTAVSWVSRLQKIV 1189          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 313 bits (801), Expect = 6.810e-91
Identity = 220/698 (31.52%), Postives = 340/698 (48.71%), Query Frame = 1
Query:   25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENF---------------VTAHHGQLEHDGTRDIEGLFSAPSVT--------PAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVS--EEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIP-FVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*---FSRDEGGETDILVAIYVDYLV-IARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCRED----------------------------------FRFVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            GL++K LR+  G E+   +F ++C    I  ++S  YTPQQNGV+ER  RT+ E+ +S +  ANM   +W EA   AVY  NR+ T   N   P+E W    P + +L+VFG   ++   S  RRKLD ++   VF+G+  ++  Y++Y  E+K+   S++V F E  F               V      ++H+   D E     P+V         PAV  S    EE+   +K+    EN E      A      D  N T +++   EEP+  + AL    A KW+ A+     + +   TWE       P G   I +KW++K K   +G+V R+KARLVAQ +SQ  G ++ E  + VA  S++ T+ +LA KH+ E+  M V  A+LN  +E ++++  P  F    ++ P +V +L+K  Y LKQS+R WN TLD FL   G ++S  D C+     + D G  + +++A+YVD ++ I+     ++  KD +   F M D G +  +LG+ ++RDR   T+ ISQ  Y+  VL R     C+ + TP+E        E                +   Y+  +G L   ST TRPDI+ AV   +  M +P +E                                   + + DA+WA DV+ R+ST+GY+ K+    +SWCS+KQ  V
Sbjct:   97 GLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFYANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYEVWFSKKPDVSNLKVFGSVCFIHTPSNLRRKLDPRSRKAVFIGYPLNTKGYKLYDIESKNFVRSKDVGFYENKFHDFKVVTKELIIREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAVGESY---EES--FMKQV---ENLETKRQRKAPKKFSPDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFV--DQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSITNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGF------------DKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHRNGVKRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASV 769          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: W8AK63_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8AK63_CERCA)

HSP 1 Score: 308 bits (788), Expect = 1.960e-90
Identity = 221/664 (33.28%), Postives = 332/664 (50.00%), Query Frame = 1
Query:   34 MKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHD-GTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREE--NSGSAARVAKVEDTSNPTRAVSEEEPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPF-VRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRHEK-VDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            +K LRS  GRE+  + F  F  EN I ++ +V YTPQQNGVAER+ RT+ E  RS ++ + +G  +W EA   A Y  NR+ T+      P+E W    P + HL+VFG  A +     ++RK   K    V +G+ + S +YR+Y P +K V + R+V F +  +V   H Q  +D  T D E + +     P++    +   E +  L+  R R  R     +G   R  K     N  +A   E P   + A+ ++   +W +AM       VK  TW   D   LP G K I  KW+   K   +GSV R+K+RLVA+  SQ  G +F ET + V   +T+  V +LA +++  L  + V  AYLN+ ++ +++VK P  F   +   P  V +L K  Y LKQS R WN  L+  L+ +G     ++PC+ ++++E  + +I +A+YVD ++IA    K ++  K  I+  F + D G     LGI + RD   G I+ISQ  YI ++LK +  +EC+ V TP+    E+    S DK         +  N+TEY+ ++G LM  +  TRPDI ++V + A+R  DP  E                               FVDADW  D  DRKS +G      G   SW S+KQ +V
Sbjct:   18 IKILRSDNGREYLSKNFENFLKENGIVRQLTVPYTPQQNGVAERANRTLVEMARSMIVHSGLGECFWAEAVATAAYLQNRSVTKSLANRTPYEAWTSRKPNVSHLKVFGQLA-IAIDKTEKRKFQPKGKKMVMVGYSDVSKAYRLYDPASKKVIVCRDVIFIDGAYVP--HEQNPNDIVTFDAEDIVN--EAEPSIAEDTSGDYEVNSDLQPTRVRRGRPAFVRTGRRGRPRKRRHFLNMMKAADVEIPITVSEAMNSKYVKQWTSAMQKEFDALVKRNTWSLVD---LPAGEKPIGCKWVYSVKQNSDGSVQRFKSRLVAKGCSQQFGINFNETFSPVVRYATIRLVIALACEYNLHLHQLDVSSAYLNSELQYDVYVKQPENFV--NEQFPNRVLKLNKALYGLKQSGREWNEKLNSVLIKMGFMPCVSEPCV-YTKNEEDKYNI-IAVYVDDILIASSSLKDLNNIKARIAKEFDIVDGGPAKYFLGIQIERDGDVGNIAISQRQYIYDLLKHNGMEECKAVSTPL----EVGFQTSCDKDE------CIKVNTTEYQSLIGALMYLAISTRPDILHSVSKLAQRNTDPHLEHKTAAKRILRYLKGTAELKLHYKKTNRLVECFVDADWGGDASDRKSYSGSAFVAAGAVTSWESKKQSIV 659          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A438FRF7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FRF7_VITVI)

HSP 1 Score: 315 bits (808), Expect = 8.110e-90
Identity = 221/678 (32.60%), Postives = 338/678 (49.85%), Query Frame = 1
Query:   25 GLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRAR--GEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEE-------------EPKCAAAALKNQEADKWRAAM-----TFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVDYLVIARRH-EKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            GL++K LRS  G E+    F ++CA   I+ E ++  TPQQNGVAER  RT+ E  RS  + A +   +W +A   A Y +NR  + P    LP E W     K  HL+VFGC +YV      R KLD K+ +  F+ + ++   YR +  +N+ +  SRNV F+E+  +      +  D T +I+   S       +T+S  +  GEE          +EN       +  V +V  +S  TR                  EP+C   AL+++ + KW  AM     + +   TWE  +   LPVG KA+  KW+ K K + +GS  RYKARLV + F Q  G D+ E  + V  MST+  V  +    +  LE + V  A+L+  +EE+L++  P  F    ++   V +LRK  Y LKQ+ R W    D+F+  IG +R   D C  F   +     I++ +YVD ++IA    EK++  K  +S +F MKDLG+  ++LG+ + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+    ++   +S     E + +  V      Y   +G+LM A   TRPDIA+ V   +R M  P ++ +                             +VDAD+A D++ RKSTTG++  L G AISW S  Q++V
Sbjct:  442 GLKVKCLRSDNGGEYIDAGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCISYVHIDFDARSKLDAKSKICFFISYGDEKFGYRFWDEQNRKIIRSRNVIFNEQ-VMYKDRSSVVSDVT-EIDQKKSEFVNLDELTKSTVQKGGEED---------KENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYKIKNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQEN-LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV-----PYASAIGSLMYAMVCTRPDIAHTVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIV 1096          
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 316 bits (809), Expect = 9.530e-90
Identity = 214/678 (31.56%), Postives = 332/678 (48.97%), Query Frame = 1
Query:   10 IAKANGLQMKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVFETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPENKSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRARGEETSRILKRARARENREENSGSAARVAKVEDTSNP---TRAVSEEEPKCAAAALKNQE------ADKWRAAMT-----FVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKEEGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFELEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQSSRNWNNTLDDFLVGIGLQRSTTDPCL*FSRDEGGETDILVAIYVD-YLVIARRHEKVDKFKDNISWRFTMKDLGSLSRVLGIDVRRDRPNGTISISQGDYIREVLKRHVFDECRGVPTPVEERVEILASESADKPREPNPIGAVLGNSTEYRGMVGTLMCASTGTRPDIAYAVHQEARRMEDPCREDFR-----------------------------FVDADWAEDVEDRKSTTGYITKLNGGAISWCSRKQQLV 1911
            +    GLQ+KRLRS  G E+T  EF++FC +  I+ + +V YTPQQNGV+ER  RTV E  R  +    +   +W EA   +VY LN   T+   G  P E WH  TP ++HL+VFGC  Y +    +R KLD K+ + +FLG+   S  YRIY P  K + +SRNV+FDE +       + E    R +E           +    +  EE +                        ++D   P   TR ++E   +C  AAL+ +E       + WR AM        K  TW+  DR   P+  K I  KW+ + KL  +GSV + KARLV + + Q  G DF +T A VA   T+  + +LA K  +++    V  A+LN  +EE+++V  P E F        V +L K  Y LKQ+ R W   +D++L+  G +RS  +  L   R +  E  +++++YVD  LVI    + + +FK ++   F M DLG ++  LG+++ +   +  I ISQ  Y+ E+LK+   ++C+ V TP+    ++  +++  K      + A L     YR ++G+L+  S  TRPDI +A    +R M  P +  +                              + D+DWA  ++D KST+GY+     G  +W S+KQ++V
Sbjct:  510 VENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRWNWEKSKAEASNKRQLE--------VDNLQEQNSESEEQN------------------------LDDDDFPVRGTRDLAEIYERCNVAALEPKEYAEAAELEGWRVAMQEEMNMIEKNNTWQLVDR---PINQKVIGLKWVYRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYHFDVKSAFLNGFLEEDIYVDQP-EGFQVKGSENKVYKLHKALYGLKQAPRAWYTRIDNYLLQKGFERSENEATLYVKRSQN-EVKLIISLYVDDMLVIGSDFDSLRQFKHDMENEFEMSDLGQMNYFLGMEIYQC--DAGIFISQRKYVLEILKKFHMEKCKPVDTPLVINEKLSLNDAIAK------VDASL-----YRSLIGSLLYLSA-TRPDIMFAASLLSRFMHSPSQAHYGAAKRVLRYLKGTTDYGLWFLQNESGELQGYADSDWAGSIDDSKSTSGYVFSFGSGVFTWNSKKQEVV 1136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1977.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO8.040e-9432.59Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001F0044641.330e-9332.36DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A151R6U8_CAJCA1.740e-9332.40Retrovirus-related Pol polyprotein from transposon... [more]
A5CBM1_VITVI7.760e-9333.79Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438JDY0_VITVI1.390e-9232.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B7BAK4_DAVIN1.690e-9131.82Uncharacterized protein n=1 Tax=Davidia involucrat... [more]
A0A6S7H8C9_PARCT6.810e-9131.52Retrovirus-related Pol poly from transposon TNT 1-... [more]
W8AK63_CERCA1.960e-9033.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FRF7_VITVI8.110e-9032.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA9.530e-9031.56Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1977contigH-paniculata_contig1977:4564..7142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue6.7e-51
Seed eggNOG ortholog67593.Physo139458
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons5
Model size2209
Cds size1281
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.5091686-UTR-H-paniculata_contig1977:4563..45961622929493.5091686-UTR-H-paniculata_contig1977:4563..4596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 4564..4596 +
1691480885.82352-UTR-H-paniculata_contig1977:4563..45961691480885.82352-UTR-H-paniculata_contig1977:4563..4596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 4564..4596 +
1622929493.5871916-UTR-H-paniculata_contig1977:6113..64631622929493.5871916-UTR-H-paniculata_contig1977:6113..6463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6114..6463 +
1691480885.8757398-UTR-H-paniculata_contig1977:6113..64631691480885.8757398-UTR-H-paniculata_contig1977:6113..6463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6114..6463 +
1622929493.6235356-UTR-H-paniculata_contig1977:6508..66391622929493.6235356-UTR-H-paniculata_contig1977:6508..6639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6509..6639 +
1691480885.88912-UTR-H-paniculata_contig1977:6508..66391691480885.88912-UTR-H-paniculata_contig1977:6508..6639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6509..6639 +
1622929493.6389449-UTR-H-paniculata_contig1977:6728..71421622929493.6389449-UTR-H-paniculata_contig1977:6728..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6729..7142 +
1691480885.8979769-UTR-H-paniculata_contig1977:6728..71421691480885.8979769-UTR-H-paniculata_contig1977:6728..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1977 6729..7142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.5375986-CDS-H-paniculata_contig1977:4596..52101622929493.5375986-CDS-H-paniculata_contig1977:4596..5210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 4597..5210 +
1691480885.8355482-CDS-H-paniculata_contig1977:4596..52101691480885.8355482-CDS-H-paniculata_contig1977:4596..5210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 4597..5210 +
1622929493.5550418-CDS-H-paniculata_contig1977:5431..56111622929493.5550418-CDS-H-paniculata_contig1977:5431..5611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 5432..5611 +
1691480885.8490398-CDS-H-paniculata_contig1977:5431..56111691480885.8490398-CDS-H-paniculata_contig1977:5431..5611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 5432..5611 +
1622929493.571941-CDS-H-paniculata_contig1977:5626..61131622929493.571941-CDS-H-paniculata_contig1977:5626..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 5627..6113 +
1691480885.8648286-CDS-H-paniculata_contig1977:5626..61131691480885.8648286-CDS-H-paniculata_contig1977:5626..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1977 5627..6113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1977.5031.1prot_H-paniculata_contig1977.5031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1977 4597..6113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1977.5031.1

>prot_H-paniculata_contig1977.5031.1 ID=prot_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp
MKRLRSKQGREFTGEEFRQFCAENSIKQEFSVAYTPQQNGVAERSWRTVF
ETTRSEMIIANMGCRYWVEAARAAVYCLNRASTRPHNGGLPHEKWHVTTP
KLDHLRVFGCTAYVMFQSQQRRKLDDKTWLRVFLGHYEDSPSYRIYRPEN
KSVQLSRNVRFDEENFVTAHHGQLEHDGTRDIEGLFSAPSVTPAVTRSRA
RGEETSRILKRARARENREENSGSAARVAKVEDTSNPTRAVSEEEPKCAA
AALKNQEADKWRAAMTFVKTWTWESEDRGRLPVGWKAISTKWIIKRKLKE
EGSVPRYKARLVAQSFSQVGGEDFFETSALVAHMSTLHTVFSLATKHDFE
LEGMGVDVAYLNAPMEEELFVKLPSEFFPFSRDIPFVRRLRKRPYDLKQS
SRNWNNTLDDFLVGIGLQRSTTDPCL*
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mRNA from alignment at H-paniculata_contig1977:4564..7142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1977.5031.1 ID=mRNA_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2579bp|location=Sequence derived from alignment at H-paniculata_contig1977:4564..7142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGGATATTGCGAAGGCAAACGGGCTACAAATGAAACGTCTTCGGTC AAAACAAGGACGAGAGTTTACAGGAGAAGAGTTCCGACAATTTTGTGCGG AAAATAGCATCAAGCAAGAATTTTCTGTCGCCTACACGCCGCAGCAAAAC GGTGTGGCGGAGCGCAGCTGGCGTACCGTTTTCGAGACGACCCGAAGTGA GATGATCATCGCCAACATGGGTTGCAGGTATTGGGTGGAGGCGGCGCGCG CGGCTGTGTACTGCTTAAATCGCGCCTCGACGCGACCGCACAATGGAGGG CTGCCGCATGAGAAATGGCACGTCACGACACCAAAGCTTGACCACCTTCG TGTCTTCGGCTGCACGGCATACGTGATGTTCCAGTCGCAGCAGAGACGCA AACTCGATGACAAAACATGGTTGAGAGTGTTTCTGGGGCACTACGAGGAC AGCCCAAGCTATCGCATATATCGCCCGGAAAACAAGAGCGTCCAGTTGAG CAGGAACGTAAGATTTGATGAAGAGAATTTCGTAACAGCTCATCACGGAC AGCTGGAGCACGACGGAACGCGAGACATAGAAGGTCTTTTTTCAGCACCG TCGGTCACACCAGCGGTCACGCGATCTCGCGCCCGAGGCGAGGAGACGTA ACCAACACGGAAAAATCGACGCCAACGTCGTCAGCCGCCAGCGCCAACCC ATAGAGTGCCTTGAGCGATGACGATACTCATGAAGATAATGATGATTCGG AGGTGTACGATGCTGAACCAGAAACCGAAGACACATCATCAGCGGAGACA TAGGCGCCCACACCTCGGGGGGAGACCAGGACAGAGGCAGGGACAGAGGA GCCGCGACCGCGAGATAGATCACGAATATTGAAACGGGCGAGAGCGAGGG AAAACCGCGAAGAGAATTCAGGCTCTGCCGCGCGCGTGGCTAAAGTGGAA GACACCAGCAACCCTACACGGGCGGTATCTGAGGAAGAGCCGAAATGTGC AGCAGCAGCATTGAAGAACCAAGAGGCAGATAAATGGCGCGCGGCAATGT AGGAGGAATGAAGGACATTCGTAAAAACTTGGACGTGGGAGAGCGAGGAC CGGGGGAGGTTACCGGTGGGATGGAAGGCGATCTCAACCAAATGGATTAT CAAGCGCAAATTGAAGGAGGAAGGCAGCGTGCCACGCTACAAAGCGCGAC TTGTGGCTCAAAGTTTTTCACAGGTGGGGGGCGAAGATTTCTTTGAAACC AGTGCCCTCGTAGCTCACATGTCGACATTGCATACTGTTTTTAGCCTGGC CACCAAACATGATTTCGAACTAGAAGGCATGGGCGTAGATGTGGCGTATT TAAACGCCCCCATGGAAGAAGAGCTGTTTGTTAAGCTACCCTCTGAGTTT TTTCCTTTTTCCCGAGACATACCGTTTGTACGCCGCCTGCGTAAAAGACC CTATGACCTCAAGCAGAGCAGTCGAAACTGGAATAACACTCTTGACGATT TTCTTGTTGGGATAGGACTCCAGCGTTCCACTACCGACCCATGCTTGTAG TTCTCTCGCGACGAAGGGGGAGAGACAGATATTCTCGTGGCCATCTATGT TGACTACCTGGTAATCGCTCGACGTCATGAAAAAGTAGACAAGTTCAAGG ACAACATAAGTTGGCGTTTTACGATGAAAGACTTGGGCTCCCTCTCGCGC GTGTTGGGAATAGACGTACGACGTGACCGCCCCAATGGTACCATATCAAT ATCCCAAGGTGACTACATCCGCGAGGTACTGAAAAGACACGTTTTTGACG AGTGTCGAGGCGTGCCCACCCCTGTGGAGGAAAGAGTGGAGATTTTGGCA TCCGAGTCGGCCGACAAGCCCCGCGAACCGAATCCAATTGGGGCTGTACT GTCGGACATAGGCGCAGGAGTACAAGAAAGCAGCAGTGGGAGAAGTGGTA ATTCAACTGAATACAGAGGCATGGTAGGAACACTCATGTGCGCCTCGACA GGAACTAGACCTGATATAGCATACGCGGTACACCAAGAAGCACGCCGTAT GGAGGACCCATGTCGGGAAGACTTCAGTACATGCAACCGCATTTTCGTTA TAGCAGTCCTGCGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATG GTCACGATCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAG GACCGAAAGTCCACAACGGGATACATTACCAAGCTGAACGGTGGTGCGAT AAGTTGGTGTTCTAGGAAGCAACAGTTAGTCATGCACAGAGGCAGAGTAC ATTGCTGCAGGAGAAGTGGGAAAGGAGGCGGTATATCTTAGGGATTTACA AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTACTTGAGGACA AGTCAGCTATCAATCTCAGTAAGGGATCTGACACACACTGCAGGACAAAG CACATCGGAGTGCGCTGGCACGGAATCCGAGAGTGGGTTCGGGAAGGAAT ATTGGCGTTGAAATACGTGCAGACCGGCGACCACCTTGCTGACATTTTAA CGACAGGACTGAGCAGAGTGAAGATTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1977:4564..7142+

>mRNA_H-paniculata_contig1977.5031.1 ID=mRNA_H-paniculata_contig1977.5031.1|Name=mRNA_H-paniculata_contig1977.5031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig1977:4564..7142+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACGTCTTCGGTCAAAACAAGGACGAGAGTTTACAGGAGAAGAGTT
CCGACAATTTTGTGCGGAAAATAGCATCAAGCAAGAATTTTCTGTCGCCT
ACACGCCGCAGCAAAACGGTGTGGCGGAGCGCAGCTGGCGTACCGTTTTC
GAGACGACCCGAAGTGAGATGATCATCGCCAACATGGGTTGCAGGTATTG
GGTGGAGGCGGCGCGCGCGGCTGTGTACTGCTTAAATCGCGCCTCGACGC
GACCGCACAATGGAGGGCTGCCGCATGAGAAATGGCACGTCACGACACCA
AAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGCATACGTGATGTTCCA
GTCGCAGCAGAGACGCAAACTCGATGACAAAACATGGTTGAGAGTGTTTC
TGGGGCACTACGAGGACAGCCCAAGCTATCGCATATATCGCCCGGAAAAC
AAGAGCGTCCAGTTGAGCAGGAACGTAAGATTTGATGAAGAGAATTTCGT
AACAGCTCATCACGGACAGCTGGAGCACGACGGAACGCGAGACATAGAAG
GTCTTTTTTCAGCACCGTCGGTCACACCAGCGGTCACGCGATCTCGCGCC
CGAGGCGAGGAGACATGAAACGTCTTCGGTCAAAACAAGGACGAGAGTTT
ACAGGAGAAGAGTTCCGACAATTTTGTGCGGAAAATAGCATCAAGCAAGA
ATTTTCTGTCGCCTACACGCCGCAGCAAAACGGTGTGGCGGAGCGCAGCT
GGCGTACCGTTTTCGAGACGACCCGAAGTGAGATGATCATCGCCAACATG
GGTTGCAGGTATTGGGTGGAGGCGGCGCGCGCGGCTGTGTACTGCTTAAA
TCGCGCCTCGACGCGACCGCACAATGGAGGGCTGCCGCATGAGAAATGGC
ACGTCACGACACCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGCA
TACGTGATGTTCCAGTCGCAGCAGAGACGCAAACTCGATGACAAAACATG
GTTGAGAGTGTTTCTGGGGCACTACGAGGACAGCCCAAGCTATCGCATAT
ATCGCCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTAAGATTTGAT
GAAGAGAATTTCGTAACAGCTCATCACGGACAGCTGGAGCACGACGGAAC
GCGAGACATAGAAGGTCTTTTTTCAGCACCGTCGGTCACACCAGCGGTCA
CGCGATCTCGCGCCCGAGGCGAGGAGACATCACGAATATTGAAACGGGCG
AGAGCGAGGGAAAACCGCGAAGAGAATTCAGGCTCTGCCGCGCGCGTGGC
TAAAGTGGAAGACACCAGCAACCCTACACGGGCGGTATCTGAGGAAGAGC
CGAAATGTGCAGCAGCAGCATTGAAGAACCAAGAGGCAGATAAATGGCGC
GCGGCAATATCACGAATATTGAAACGGGCGAGAGCGAGGGAAAACCGCGA
AGAGAATTCAGGCTCTGCCGCGCGCGTGGCTAAAGTGGAAGACACCAGCA
ACCCTACACGGGCGGTATCTGAGGAAGAGCCGAAATGTGCAGCAGCAGCA
TTGAAGAACCAAGAGGCAGATAAATGGCGCGCGGCAATGACATTCGTAAA
AACTTGGACGTGGGAGAGCGAGGACCGGGGGAGGTTACCGGTGGGATGGA
AGGCGATCTCAACCAAATGGATTATCAAGCGCAAATTGAAGGAGGAAGGC
AGCGTGCCACGCTACAAAGCGCGACTTGTGGCTCAAAGTTTTTCACAGGT
GGGGGGCGAAGATTTCTTTGAAACCAGTGCCCTCGTAGCTCACATGTCGA
CATTGCATACTGTTTTTAGCCTGGCCACCAAACATGATTTCGAACTAGAA
GGCATGGGCGTAGATGTGGCGTATTTAAACGCCCCCATGGAAGAAGAGCT
GTTTGTTAAGCTACCCTCTGAGTTTTTTCCTTTTTCCCGAGACATACCGT
TTGTACGCCGCCTGCGTAAAAGACCCTATGACCTCAAGCAGAGCAGTCGA
AACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCCAGCG
TTCCACTACCGACCCATGCTTGTAGGACATTCGTAAAAACTTGGACGTGG
GAGAGCGAGGACCGGGGGAGGTTACCGGTGGGATGGAAGGCGATCTCAAC
CAAATGGATTATCAAGCGCAAATTGAAGGAGGAAGGCAGCGTGCCACGCT
ACAAAGCGCGACTTGTGGCTCAAAGTTTTTCACAGGTGGGGGGCGAAGAT
TTCTTTGAAACCAGTGCCCTCGTAGCTCACATGTCGACATTGCATACTGT
TTTTAGCCTGGCCACCAAACATGATTTCGAACTAGAAGGCATGGGCGTAG
ATGTGGCGTATTTAAACGCCCCCATGGAAGAAGAGCTGTTTGTTAAGCTA
CCCTCTGAGTTTTTTCCTTTTTCCCGAGACATACCGTTTGTACGCCGCCT
GCGTAAAAGACCCTATGACCTCAAGCAGAGCAGTCGAAACTGGAATAACA
CTCTTGACGATTTTCTTGTTGGGATAGGACTCCAGCGTTCCACTACCGAC
CCATGCTTGTAG
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