Gvermi12440.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12440.t1
Unique NameGvermi12440.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4755787..4756490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue7.3e-56
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12440Gvermi12440Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4754829..4756490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1Gvermi12440.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4755787..4756490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1.stop1Gvermi12440.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4755787..4755789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1.CDS1Gvermi12440.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4755787..4755802 -
Gvermi12440.t1.CDS2Gvermi12440.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4755877..4756490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1.exon1Gvermi12440.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4755787..4755802 -
Gvermi12440.t1.exon2Gvermi12440.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4755877..4756490 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1.intron1Gvermi12440.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4755803..4755876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t1.start1Gvermi12440.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4756488..4756490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12440.t1 ID=Gvermi12440.t1|Name=Gvermi12440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp
MEIHPKMGVPIVHSLSSPAIQKTYAEPTPMKQWRIASCAIAMAGIQVCYA
AQINLGTAQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHVSDGCTHPLG
RRRPFLIAGTIFTSCALLLFSHAGKVAYILSGSPSPSIALALAICAFFAL
DFSIQAIQAPLRALITDVVPQPQRALANSYIGVFTGVGNLVGGLLAGMEL
KTIMPVHDA*
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spliced messenger RNA

>Gvermi12440.t1 ID=Gvermi12440.t1|Name=Gvermi12440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_3404:4755787..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCTGTTCACGACGCATGA
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protein sequence of Gvermi12440.t1

>Gvermi12440.t1 ID=Gvermi12440.t1|Name=Gvermi12440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=210bp
MEIHPKMGVPIVHSLSSPAIQKTYAEPTPMKQWRIASCAIAMAGIQVCYA
AQINLGTAQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHVSDGCTHPLG
RRRPFLIAGTIFTSCALLLFSHAGKVAYILSGSPSPSIALALAICAFFAL
DFSIQAIQAPLRALITDVVPQPQRALANSYIGVFTGVGNLVGGLLAGMEL
KTIMPVHDA*
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mRNA from alignment at ScGOVlb_3404:4755787..4756490-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12440.t1 ID=Gvermi12440.t1|Name=Gvermi12440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=704bp|location=Sequence derived from alignment at ScGOVlb_3404:4755787..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCGTTTTTCAAGCGCGACGTGGAGGCGCTTTTCACGCT
TGCTGCGCTCATTCTTGTCATTACCGTCGCGGCCACAGTGTTCACGACGC
ATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4755787..4756490-

>Gvermi12440.t1 ID=Gvermi12440.t1|Name=Gvermi12440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=630bp|location=Sequence derived from alignment at ScGOVlb_3404:4755787..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCTGTTCACGACGCATGA
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