Gvermi12393.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12393.t1
Unique NameGvermi12393.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Homology
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A2V3J3X6_9FLOR (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3X6_9FLOR)

HSP 1 Score: 348 bits (893), Expect = 1.600e-120
Identity = 163/182 (89.56%), Postives = 176/182 (96.70%), Query Frame = 0
Query:   35 MAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILPKL 216
            MAEKSP+VPFMDAP  LTPDM GYVGFDPFNISA+LNVKWLQEAEIKHARICLLAILGF+V+E+YQFPWY+DYPH+VIYRHNWAVTNGSL QILLWCSFFEIMT+PAVTQMVTG+SDR PGDFKFDPLGL KDPAK+AVYKVNEIKNGRLAMIAVSGAIHHAA+TNQNL+EQLT+GNILPKL
Sbjct:    1 MAEKSPSVPFMDAPSRLTPDMAGYVGFDPFNISAFLNVKWLQEAEIKHARICLLAILGFMVAEVYQFPWYSDYPHVVIYRHNWAVTNGSLSQILLWCSFFEIMTMPAVTQMVTGRSDREPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMIAVSGAIHHAAVTNQNLIEQLTAGNILPKL 182          
BLAST of Gvermi12393.t1 vs. uniprot
Match: R7QQW5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQW5_CHOCR)

HSP 1 Score: 297 bits (760), Expect = 9.770e-100
Identity = 147/214 (68.69%), Postives = 166/214 (77.57%), Query Frame = 0
Query:    1 MAFVTSFVPAFAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            MAFV SF        A   A+V       VA V M  KSP+VPFMD P  L+PDMPGYVGFDP NIS YLNVK+LQEAEIKH R+CLLAILG IV+E+YQFPWY +YPHLVI RHNW VTNGS+ Q+L+W SF+EIMT PA  QMV G+SDR PG F FDPLGL K+P K+A YKVNEIKNGRLAMIAVSGAIHHAAI+ QN+ EQ+TSG +LP
Sbjct:    2 MAFVGSFTAPALSRNAFAGAKVSAAPSHVVARVSMQTKSPSVPFMDVPANLSPDMPGYVGFDPLNISDYLNVKFLQEAEIKHCRVCLLAILGMIVAEVYQFPWYKEYPHLVIDRHNWGVTNGSMLQLLIWISFWEIMTTPATIQMVNGQSDREPGYFGFDPLGLGKNPDKLATYKVNEIKNGRLAMIAVSGAIHHAAISQQNMFEQITSGGLLP 215          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A5J4YYC4_PORPP (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYC4_PORPP)

HSP 1 Score: 211 bits (538), Expect = 4.740e-66
Identity = 111/211 (52.61%), Postives = 145/211 (68.72%), Query Frame = 0
Query:    6 SFVPAFAGARAAFS-ARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNW-AVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            +FV     ARA+   A VCT + +    V M  KS +VPFMDAPPAL   + G VGFDP NIS +LN+KWL+E+E+KH RIC+LA LG IV E+Y+FP+Y   P +    H++ A  NG L Q+L++ SFFEIMT PAV QM+TG+SDRAPG F FDPLGL K+P     ++V+E+KNGRLAMIAV G +H   +T   ++ QL +G  +P
Sbjct:    8 AFVSGVGLARASVGRAAVCTKNVQ----VSMMAKSKSVPFMDAPPALDGSLAGDVGFDPLNISGFLNIKWLRESELKHGRICMLAALGMIVQEVYRFPFYQGAPAVATEAHDYFAKWNGPLGQVLIFASFFEIMTTPAVIQMITGESDRAPGYFAFDPLGLGKNPDARKRFEVSELKNGRLAMIAVGGMVHQMWLTKMGIIGQLQAGKFMP 214          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A7S0ZC59_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZC59_9RHOD)

HSP 1 Score: 202 bits (515), Expect = 3.410e-63
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 0
Query:   48 PPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNW-AVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            P AL   M G VGFDP  IS +LN+KWL+EAE+KH RIC+LA LG++V E+Y FP+Y   PH+    H++ A  NG L QILL+ SFFEIMT PA+ QMVTG+SDR PGDFKFDPL LAK+   M  +++NE+KNGRLAMIA+ G +H A +TN   +EQL SG  +P
Sbjct:    2 PSALDGSMAGDVGFDPLGISDFLNIKWLREAELKHGRICMLAALGWLVQEIYTFPFYPGAPHVPTAAHDYFAKWNGPLGQILLFTSFFEIMTTPAIIQMVTGESDRMPGDFKFDPLKLAKNEETMKKFQLNEVKNGRLAMIAIGGLVHQAWLTNMGAIEQLQSGKFIP 169          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A1X6P6J5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6J5_PORUM)

HSP 1 Score: 203 bits (516), Expect = 1.020e-62
Identity = 111/217 (51.15%), Postives = 136/217 (62.67%), Query Frame = 0
Query:    1 MAFVTSFVPAFAGA-RAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALT--PDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            MAFV++FVPA +   R    ARV T +       V    S +VPFM+ PP L   P MPG V FDP NISAYL +KWLQEAEIKH R+C+LA LG +V E + FP+Y + PHL    H++ V  G +  IL+    +E +T PAV QM+ G  DR PG F FDPL L K+PA    + VNE+KNGRLAMI + G IH   +TNQ  VEQL  GN LP
Sbjct:    1 MAFVSTFVPAVSAVLRRGAPARVSTRAVARSVSTVTMRASKSVPFMEVPPVLAENPSMPGNVEFDPLNISAYLPIKWLQEAEIKHGRVCMLACLGLLVQEFFTFPFYKNAPHLATSGHDYGVKVGGMVHILMAVVIWEALTTPAVVQMING-GDRKPGYFGFDPLNLGKNPA----FAVNEVKNGRLAMIGIGGMIHQQWMTNQGSVEQLLKGNFLP 212          
BLAST of Gvermi12393.t1 vs. uniprot
Match: Q7XY91_GRIJA (Light-harvest protein (Fragment) n=2 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY91_GRIJA)

HSP 1 Score: 199 bits (505), Expect = 2.280e-62
Identity = 91/119 (76.47%), Postives = 104/119 (87.39%), Query Frame = 0
Query:   97 ELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILPK 215
            ELY FP+Y+  PHL I RH+W V NGS+ QILLWCSFFEIMT+PA+ QM+ G+ DR PGDF FDPLGL KDPAK+AV+KVNE+KNGRLAM AVSGAIHHAAITNQNLVEQLTSGN++PK
Sbjct:    1 ELYTFPFYSGAPHLAINRHDWGVENGSMKQILLWCSFFEIMTMPALVQMLNGQGDRVPGDFCFDPLGLGKDPAKLAVFKVNEVKNGRLAMCAVSGAIHHAAITNQNLVEQLTSGNVIPK 119          
BLAST of Gvermi12393.t1 vs. uniprot
Match: UPI001CA46561 (chlorophyll a/b-binding protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA46561)

HSP 1 Score: 198 bits (504), Expect = 1.420e-60
Identity = 113/221 (51.13%), Postives = 139/221 (62.90%), Query Frame = 0
Query:    1 MAFVTSFVPAFA-----GARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALT--PDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            MAFV +FVP+ A     GA A  +AR    S    A  V    S +VPFM+ PPAL   P+MPG V FDP NIS+YL +KW+QEAEIKH RIC+LA LG +V E + FP+Y + PHL    H++ V  G +  IL+    FE +T PAV QM+ G  DR PG F FDPL L K+P+    + VNEIKNGRLAMI + G IH   +TNQ  +EQL  GN LP
Sbjct:   25 MAFVGTFVPSPAAVLSRGATARVAARPVARS----ATTVTMRASKSVPFMEVPPALAANPNMPGNVEFDPLNISSYLPIKWMQEAEIKHGRICMLACLGLLVQEFFTFPFYKNAPHLATAGHDYGVKVGGMVHILIGVIIFEALTTPAVIQMING-GDREPGYFGFDPLKLGKNPS----FAVNEIKNGRLAMIGIGGMIHQQWMTNQGSIEQLFKGNFLP 236          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A7S2ZRW4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRW4_9RHOD)

HSP 1 Score: 196 bits (498), Expect = 5.800e-60
Identity = 106/215 (49.30%), Postives = 135/215 (62.79%), Query Frame = 0
Query:    2 AFVTSFVPAFAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKSDRAPGDFKFDPLGLAK--DPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            AFV SF P+         AR+     R  A V M  KS +VPFMD P AL   M G VGFDP N SAYL + WL+EAEIKH R+C+LA LG++ +E Y FP+Y + P L    H++  T  +L Q+LL+   +EI+T PAV QMVTGKSDR PG F FDPL L    DPAK   Y+++E+KNGRLAMIA+ G +H A +T    + Q+ +G   P
Sbjct:    3 AFVGSFAPSRLTRTTFAGARLSGAPVRSAARVTMQAKSKSVPFMDCPKALDGSMVGDVGFDPLNFSAYLPLSWLREAEIKHCRLCMLAALGWLTTEFYTFPFYANAPKLPTDAHDYF-TRTALAQVLLFVCVWEILTTPAVIQMVTGKSDRKPGYFGFDPLNLTSKWDPAKFEKYQLSELKNGRLAMIAIGGLVHQAWLTKMPAIAQIQAGKFFP 216          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A5J4YN76_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 196 bits (498), Expect = 6.170e-60
Identity = 107/213 (50.23%), Postives = 144/213 (67.61%), Query Frame = 0
Query:    4 VTSFVPAFAGARAAFS-ARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMT-LPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            + +FV +   ARA+     VCT  + G A + M  KS +VPFM+AP AL   M G VGFDP   S Y+++K+L+EAE+KH RIC+LA LG IV E+YQFP+Y+  P L    H++ V  GSL QILL+ SF E++   P + Q + G++DRAPG F FDPLGL KD AK   Y+++E+KNGRLAMIAV G IH A +    ++EQL++G +LP
Sbjct:    8 MAAFVSSLGLARASVGRGAVCT--KPGSAQLSMMAKSKSVPFMEAPAALDGSMVGDVGFDPLGFSNYIDLKFLREAELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGYFAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP 218          
BLAST of Gvermi12393.t1 vs. uniprot
Match: A0A2V3J1F6_9FLOR (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F6_9FLOR)

HSP 1 Score: 191 bits (484), Expect = 8.110e-58
Identity = 104/218 (47.71%), Postives = 134/218 (61.47%), Query Frame = 0
Query:    1 MAFVTSF-VPA--FAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPALTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQFPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMT-LPAVTQMVTGKSDRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITNQNLVEQLTSGNILP 214
            MAFV+SF +PA       A   A++ +      A V MAE S A+PF+  P  +  D  GY GFDP   +  +N K+LQEAEIKHARIC+LA+LG ++ E Y FPWY++ P L    H W V  GSL QIL+W SF+EI+   PA+ QM+T  S R PG + FDPLGL K  A    ++ +EIKNGRLAMIA+ G +H   +T    V+QL  G  LP
Sbjct:    1 MAFVSSFTLPARQTLSRSAICGAKLASQPVPSRASVRMAETSAAIPFLPKPQNIPEDAAGYAGFDPLGFTNVMNFKFLQEAEIKHARICMLAVLGILIPEQYVFPWYSEAPKLAAGIHQWGVNQGSLNQILIWSSFWEIVVGTPALIQMLTLDSPRQPGYYAFDPLGLGKTQAAFKRFQTSEIKNGRLAMIAIGGLLHQEFLTGMTPVQQLLEGKFLP 218          
The following BLAST results are available for this feature:
BLAST of Gvermi12393.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3X6_9FLOR1.600e-12089.56Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
R7QQW5_CHOCR9.770e-10068.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YYC4_PORPP4.740e-6652.61Chlorophyll a-b binding protein, chloroplastic n=1... [more]
A0A7S0ZC59_9RHOD3.410e-6358.33Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6P6J5_PORUM1.020e-6251.15Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
Q7XY91_GRIJA2.280e-6276.47Light-harvest protein (Fragment) n=2 Tax=Griffiths... [more]
UPI001CA465611.420e-6051.13chlorophyll a/b-binding protein n=1 Tax=Escherichi... [more]
A0A7S2ZRW4_9RHOD5.800e-6049.30Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YN76_PORPP6.170e-6050.23Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A2V3J1F6_9FLOR8.110e-5847.71Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 37..215
e-value: 1.3E-42
score: 148.0
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 23..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 105..123
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..216
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 35..209
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 48..196
e-value: 2.4E-35
score: 122.5
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 23..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4490571..4491302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12393.t1Gvermi12393.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4490571..4491302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12393.t1 ID=Gvermi12393.t1|Name=Gvermi12393.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MAFVTSFVPAFAGARAAFSARVCTLSRRGVAGVVMAEKSPAVPFMDAPPA
LTPDMPGYVGFDPFNISAYLNVKWLQEAEIKHARICLLAILGFIVSELYQ
FPWYTDYPHLVIYRHNWAVTNGSLYQILLWCSFFEIMTLPAVTQMVTGKS
DRAPGDFKFDPLGLAKDPAKMAVYKVNEIKNGRLAMIAVSGAIHHAAITN
QNLVEQLTSGNILPKL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln