Gvermi12321.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12321.t1
Unique NameGvermi12321.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length607
Homology
BLAST of Gvermi12321.t1 vs. uniprot
Match: A0A2V3J194_9FLOR (RNase III domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J194_9FLOR)

HSP 1 Score: 649 bits (1674), Expect = 2.830e-226
Identity = 338/604 (55.96%), Postives = 422/604 (69.87%), Query Frame = 0
Query:    1 MRSALGIRRIADIHVSQVMQATDADILHLRAVLRDWHVANFRNWPLLLRALTHPSISNWAERTLNLKKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQ----FTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRRLDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLLHDMKTVQHANMEVPQYQESLARELGAVLKQQLSFVASRRRRGRSPMLPLDCFEPVQCEVLDLEPEGVERREHDLFYCAIAVRKRDQLHSPLKEADLLCVASHFSVETARIAALEHAIEMVNGTKSALEKVDGAGTKPMRLQLRKCVYGEDVPTLETRFLGDGRWHHDGDYRHLATLLERVGAAGTAGLHKLDAEQIQGKVQALRRCAGEMDGGWDVHDGQYDALPAS-HKGSVRSPVRAEGDPAICPTAVARCMSVGPDLALNSAIARRFEAPFAGIQDAERLVQQITNTTDELCTLSVQQRNVRVKAYHVLGSLATKLWSVQSSMQDVSQDRAEIVAESERRGGMSHLMRRALLGDRGLADISDLRVNGAYVAIGMCVDSVGCSSALAWLSGAEQMARD 599
            MRSALGIRRIAD+ V QV+ ATDADIL L+ V+  W V  FR WPLLLRALTHPSISNWAER L +KKRSL P+ LELLGDRVVGT+VALQLLRWQT        ++     + S ++R LVGNRGMA VAR+IGI  LLRWEKPLPP AHR RLD TGVD ATG +CNT++NA ANAYEAVAAA+YLD ALP+A  FV +TLL  ++ VQ+AN E+P ++E L   + A++KQQ++F+ S +RR       ++ FEP++C VLDL P+  E R H+LFYCA+A+R +    +   E+D + VASHFSVETARIAAL  AI M++G  +A +      T+P+ L+ R     E    LE  F  DGRW +  DY HLA LL+RV   GT GL  LDA QIQ ++QAL R A   D  W     ++  L  S H  +  +  R +G+P +CP  + RC+SVG    L S +AR  EAPF GI+ A R+V+ ITN+ DEL +L+V +R+ R KAYHVLG  A +LWSVQSSMQD S++R  +V+ SE + GMS +M+ ALLGDRGLAD+ DLRVN AYVAIGMCV S GC SA+AWLSGAEQ+A D
Sbjct:    1 MRSALGIRRIADVEVRQVLHATDADILQLQRVMTQWQVPQFRAWPLLLRALTHPSISNWAERMLKVKKRSLSPSTLELLGDRVVGTAVALQLLRWQTCPDEDHPHSRLAHAPRLSTVLRGLVGNRGMALVARQIGIDRLLRWEKPLPPLAHRGRLDQTGVDLATGFSCNTEVNAFANAYEAVAAAVYLDCALPAATDFVANTLLRRVEHVQNANAEIPHFEERLVHHVCALVKQQVAFITSPKRRA------VNTFEPLECHVLDLHPQLAENRAHELFYCAVALRNKQDSQNHFAESDFITVASHFSVETARIAALTQAIGMLSGNTAAAQSSQRHSTRPVPLRFRNDALDEPQHFLEANFTDDGRWQYHADYHHLAKLLQRVHTPGTTGLETLDASQIQERIQALGRSAEHDDQRWSEQGHKHHTLFQSWHSTAPHARGRPKGEPPVCPATIERCVSVGQQTQLGSELARNHEAPFLGIESASRVVEAITNSADELYSLTVPKRSARAKAYHVLGHNAVRLWSVQSSMQDCSEERVSVVSRSEEKAGMSRVMQSALLGDRGLADVEDLRVNRAYVAIGMCVHSAGCPSAMAWLSGAEQIAAD 598          
BLAST of Gvermi12321.t1 vs. uniprot
Match: A0A7W1GEC5_9BACT (Ribonuclease 3 n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1GEC5_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 6.780e-7
Identity = 60/190 (31.58%), Postives = 85/190 (44.74%), Query Frame = 0
Query:   41 FRNWPLLLRALTHPSISNWAERTLNL----KKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQFTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRRLDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLLHDMKTVQHANMEVPQYQESLARELGA 226
            F +  LL RALTH S   WA   ++     K R L   ALE +GD V+G  VA  L +  T    T+     + S +   LV  + +A  ARR+G+   LR+ +       RR+                    LA+A EA+ AAIYLD  + +A +FV+H L  ++  V  A      Y+  L   L A
Sbjct:   47 FTDRALLERALTHRS---WAHERVSPGEEEKARRLHNEALEFVGDSVLGLLVAASLFK--TYPDVTEG----ELSRMKHRLVSTQALARAARRLGVGDYLRFGRGEEKTGGRRKRA-----------------LLADAVEALLAAIYLDGGIEAADTFVQHALGQELIDVNPAAAAAADYKTMLQERLQA 210          
BLAST of Gvermi12321.t1 vs. uniprot
Match: A0A6L4YQ52_9BACT (Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 RepID=A0A6L4YQ52_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.070e-6
Identity = 59/182 (32.42%), Postives = 84/182 (46.15%), Query Frame = 0
Query:   46 LLLRALTHPSISNWAERTLNLKKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQFTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRRLDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLLHDMKTVQHANMEVPQYQESLARELGAV 227
            LL RA+TH S +N      N++       ALE LGD V+G  V+L +       +    +   K S +   LV  R +A  A  +G+   LR           R  + TG  S   L        LA+AYEA+ AAI+LD  L  A+ FVR  L HD+K +  A++    Y+ +L   L A+
Sbjct:   42 LLERAVTHRSYANEYPED-NIRHNE----ALEFLGDSVLGFIVSLWIF------ELFPGVDEGKLSKIKAYLVSARTLARRAEALGLGQFLRLN---------RGEEKTGGRSKKTL--------LADAYEAIIAAIFLDGGLVVANGFVRRELFHDLKKLNIADLSTTDYKSALQEYLQAL 195          
The following BLAST results are available for this feature:
BLAST of Gvermi12321.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J194_9FLOR2.830e-22655.96RNase III domain-containing protein n=1 Tax=Gracil... [more]
A0A7W1GEC5_9BACT6.780e-731.58Ribonuclease 3 n=1 Tax=Pyrinomonadaceae bacterium ... [more]
A0A6L4YQ52_9BACT1.070e-632.42Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 Rep... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 45..206
e-value: 3.4E-5
score: 33.2
IPR000999Ribonuclease III domainPFAMPF14622Ribonucleas_3_3coord: 46..202
e-value: 9.5E-9
score: 35.5
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 29..187
score: 9.922948
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 46..204
e-value: 3.39455E-10
score: 56.4671
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 17..223
e-value: 1.1E-18
score: 69.5
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 39..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4211767..4213587 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1Gvermi12321.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4211767..4213587 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=607bp
MRSALGIRRIADIHVSQVMQATDADILHLRAVLRDWHVANFRNWPLLLRA
LTHPSISNWAERTLNLKKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQ
FTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRR
LDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLL
HDMKTVQHANMEVPQYQESLARELGAVLKQQLSFVASRRRRGRSPMLPLD
CFEPVQCEVLDLEPEGVERREHDLFYCAIAVRKRDQLHSPLKEADLLCVA
SHFSVETARIAALEHAIEMVNGTKSALEKVDGAGTKPMRLQLRKCVYGED
VPTLETRFLGDGRWHHDGDYRHLATLLERVGAAGTAGLHKLDAEQIQGKV
QALRRCAGEMDGGWDVHDGQYDALPASHKGSVRSPVRAEGDPAICPTAVA
RCMSVGPDLALNSAIARRFEAPFAGIQDAERLVQQITNTTDELCTLSVQQ
RNVRVKAYHVLGSLATKLWSVQSSMQDVSQDRAEIVAESERRGGMSHLMR
RALLGDRGLADISDLRVNGAYVAIGMCVDSVGCSSALAWLSGAEQMARDF
NHVPRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR036389RNase_III_sf