Gvermi12321.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12321.t1
Unique NameGvermi12321.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4211767..4213587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog639030.JHVA01000001_gene1956
Preferred namernc
PFAMsRibonucleas_3_3,dsrm
Max annot lvl204432|Acidobacteriia
KEGG koko:K03685
KEGG Pathwayko03008,ko05205,map03008,map05205
Evalue0.000175
EggNOG OGsCOG0571@1|root,COG0571@2|Bacteria,3Y4M2@57723|Acidobacteria,2JJ95@204432|Acidobacteriia
EC3.1.26.3
DescriptionDigests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
COG categoryK
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12321Gvermi12321Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4211767..4213587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1.stop1Gvermi12321.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4211767..4211769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1.CDS1Gvermi12321.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4211767..4213587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1.exon1Gvermi12321.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4211767..4213587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1.start1Gvermi12321.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4213585..4213587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12321.t1Gvermi12321.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4211767..4213587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=607bp
MRSALGIRRIADIHVSQVMQATDADILHLRAVLRDWHVANFRNWPLLLRA
LTHPSISNWAERTLNLKKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQ
FTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRR
LDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLL
HDMKTVQHANMEVPQYQESLARELGAVLKQQLSFVASRRRRGRSPMLPLD
CFEPVQCEVLDLEPEGVERREHDLFYCAIAVRKRDQLHSPLKEADLLCVA
SHFSVETARIAALEHAIEMVNGTKSALEKVDGAGTKPMRLQLRKCVYGED
VPTLETRFLGDGRWHHDGDYRHLATLLERVGAAGTAGLHKLDAEQIQGKV
QALRRCAGEMDGGWDVHDGQYDALPASHKGSVRSPVRAEGDPAICPTAVA
RCMSVGPDLALNSAIARRFEAPFAGIQDAERLVQQITNTTDELCTLSVQQ
RNVRVKAYHVLGSLATKLWSVQSSMQDVSQDRAEIVAESERRGGMSHLMR
RALLGDRGLADISDLRVNGAYVAIGMCVDSVGCSSALAWLSGAEQMARDF
NHVPRG*
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spliced messenger RNA

>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_3404:4211767..4213587- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCCGCTCTCGGAATTCGCCGCATTGCAGACATCCATGTCAGTCA
GGTTATGCAGGCAACTGATGCCGACATCCTCCACCTCCGCGCTGTCCTTC
GAGACTGGCATGTCGCCAACTTTCGCAACTGGCCGCTTCTCTTGCGCGCC
CTCACACACCCCAGCATTTCAAACTGGGCAGAGCGCACCTTGAATCTCAA
GAAGAGATCGCTCGGGCCCAACGCCTTGGAGCTCCTGGGAGATCGCGTCG
TCGGCACCTCCGTCGCCTTGCAGCTGCTGCGCTGGCAAACAACGGACCAA
TTCACCCAGTGTATTCCCGTCGTCAAGCCTTCCGCTTTGATGCGAACGTT
GGTCGGCAACCGTGGAATGGCCTTTGTTGCCAGACGTATCGGTATCCAAT
CCCTGCTGAGATGGGAGAAGCCATTGCCTCCGCAAGCGCATCGCCGTCGT
TTGGATCCCACTGGCGTGGACAGTGCCACGGGCCTCACGTGCAATACCGA
CATCAACGCGCTAGCAAACGCCTACGAGGCTGTAGCCGCCGCCATATACC
TCGATTCTGCGCTGCCATCGGCCCACTCGTTTGTGCGCCATACCTTGTTG
CACGACATGAAAACGGTGCAGCATGCCAACATGGAAGTTCCTCAGTATCA
AGAATCGCTCGCCAGGGAGCTTGGGGCCGTGCTCAAGCAGCAACTATCGT
TTGTCGCCTCCAGGCGGAGAAGGGGGCGTTCTCCGATGCTTCCGCTTGAC
TGTTTTGAACCTGTGCAGTGTGAGGTACTGGATCTGGAGCCAGAAGGCGT
AGAGAGGCGTGAACACGATCTGTTCTATTGCGCCATTGCTGTTCGAAAAC
GGGATCAACTGCACTCTCCCCTGAAAGAGGCCGACCTTCTCTGCGTCGCC
TCTCATTTTTCAGTCGAAACCGCAAGAATAGCCGCGTTAGAACATGCGAT
TGAAATGGTAAATGGCACCAAATCCGCACTTGAAAAAGTAGACGGTGCTG
GCACCAAACCGATGCGGCTTCAGCTGAGGAAATGCGTCTATGGGGAAGAC
GTTCCGACTTTGGAGACTCGGTTCTTGGGCGACGGACGCTGGCATCACGA
CGGAGACTACCGTCATTTGGCAACCCTTCTTGAGCGTGTCGGGGCCGCGG
GCACGGCCGGTTTGCACAAGCTCGATGCCGAGCAAATTCAGGGCAAAGTG
CAGGCGCTCCGTCGATGCGCCGGCGAGATGGACGGGGGCTGGGACGTGCA
CGATGGGCAATACGATGCCCTGCCTGCGTCCCACAAGGGCTCCGTGCGCA
GCCCCGTGAGAGCGGAAGGTGATCCTGCAATATGCCCGACCGCAGTCGCG
CGATGCATGTCCGTCGGACCTGACCTCGCGCTGAACAGTGCAATAGCGCG
TCGCTTCGAGGCACCTTTTGCTGGCATTCAGGATGCGGAACGTCTTGTGC
AGCAAATAACCAATACCACAGATGAGCTTTGTACGCTTTCTGTGCAACAG
CGGAACGTTCGCGTCAAGGCGTATCACGTGCTTGGAAGTCTTGCTACAAA
GCTGTGGAGTGTGCAGAGTAGTATGCAAGACGTAAGCCAGGATCGTGCAG
AAATTGTGGCAGAGAGTGAGCGACGAGGTGGTATGTCGCATTTGATGCGG
CGTGCGTTGCTGGGTGACAGAGGTCTTGCTGATATCAGTGACCTGAGAGT
GAACGGAGCCTACGTTGCTATTGGTATGTGTGTGGACTCTGTCGGGTGCT
CGTCTGCTTTGGCGTGGTTGTCTGGTGCGGAACAAATGGCAAGGGACTTT
AATCATGTCCCCCGGGGATGA
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protein sequence of Gvermi12321.t1

>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=607bp
MRSALGIRRIADIHVSQVMQATDADILHLRAVLRDWHVANFRNWPLLLRA
LTHPSISNWAERTLNLKKRSLGPNALELLGDRVVGTSVALQLLRWQTTDQ
FTQCIPVVKPSALMRTLVGNRGMAFVARRIGIQSLLRWEKPLPPQAHRRR
LDPTGVDSATGLTCNTDINALANAYEAVAAAIYLDSALPSAHSFVRHTLL
HDMKTVQHANMEVPQYQESLARELGAVLKQQLSFVASRRRRGRSPMLPLD
CFEPVQCEVLDLEPEGVERREHDLFYCAIAVRKRDQLHSPLKEADLLCVA
SHFSVETARIAALEHAIEMVNGTKSALEKVDGAGTKPMRLQLRKCVYGED
VPTLETRFLGDGRWHHDGDYRHLATLLERVGAAGTAGLHKLDAEQIQGKV
QALRRCAGEMDGGWDVHDGQYDALPASHKGSVRSPVRAEGDPAICPTAVA
RCMSVGPDLALNSAIARRFEAPFAGIQDAERLVQQITNTTDELCTLSVQQ
RNVRVKAYHVLGSLATKLWSVQSSMQDVSQDRAEIVAESERRGGMSHLMR
RALLGDRGLADISDLRVNGAYVAIGMCVDSVGCSSALAWLSGAEQMARDF
NHVPRG*
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mRNA from alignment at ScGOVlb_3404:4211767..4213587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_3404:4211767..4213587- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCGCTCTCGGAATTCGCCGCATTGCAGACATCCATGTCAGTCA
GGTTATGCAGGCAACTGATGCCGACATCCTCCACCTCCGCGCTGTCCTTC
GAGACTGGCATGTCGCCAACTTTCGCAACTGGCCGCTTCTCTTGCGCGCC
CTCACACACCCCAGCATTTCAAACTGGGCAGAGCGCACCTTGAATCTCAA
GAAGAGATCGCTCGGGCCCAACGCCTTGGAGCTCCTGGGAGATCGCGTCG
TCGGCACCTCCGTCGCCTTGCAGCTGCTGCGCTGGCAAACAACGGACCAA
TTCACCCAGTGTATTCCCGTCGTCAAGCCTTCCGCTTTGATGCGAACGTT
GGTCGGCAACCGTGGAATGGCCTTTGTTGCCAGACGTATCGGTATCCAAT
CCCTGCTGAGATGGGAGAAGCCATTGCCTCCGCAAGCGCATCGCCGTCGT
TTGGATCCCACTGGCGTGGACAGTGCCACGGGCCTCACGTGCAATACCGA
CATCAACGCGCTAGCAAACGCCTACGAGGCTGTAGCCGCCGCCATATACC
TCGATTCTGCGCTGCCATCGGCCCACTCGTTTGTGCGCCATACCTTGTTG
CACGACATGAAAACGGTGCAGCATGCCAACATGGAAGTTCCTCAGTATCA
AGAATCGCTCGCCAGGGAGCTTGGGGCCGTGCTCAAGCAGCAACTATCGT
TTGTCGCCTCCAGGCGGAGAAGGGGGCGTTCTCCGATGCTTCCGCTTGAC
TGTTTTGAACCTGTGCAGTGTGAGGTACTGGATCTGGAGCCAGAAGGCGT
AGAGAGGCGTGAACACGATCTGTTCTATTGCGCCATTGCTGTTCGAAAAC
GGGATCAACTGCACTCTCCCCTGAAAGAGGCCGACCTTCTCTGCGTCGCC
TCTCATTTTTCAGTCGAAACCGCAAGAATAGCCGCGTTAGAACATGCGAT
TGAAATGGTAAATGGCACCAAATCCGCACTTGAAAAAGTAGACGGTGCTG
GCACCAAACCGATGCGGCTTCAGCTGAGGAAATGCGTCTATGGGGAAGAC
GTTCCGACTTTGGAGACTCGGTTCTTGGGCGACGGACGCTGGCATCACGA
CGGAGACTACCGTCATTTGGCAACCCTTCTTGAGCGTGTCGGGGCCGCGG
GCACGGCCGGTTTGCACAAGCTCGATGCCGAGCAAATTCAGGGCAAAGTG
CAGGCGCTCCGTCGATGCGCCGGCGAGATGGACGGGGGCTGGGACGTGCA
CGATGGGCAATACGATGCCCTGCCTGCGTCCCACAAGGGCTCCGTGCGCA
GCCCCGTGAGAGCGGAAGGTGATCCTGCAATATGCCCGACCGCAGTCGCG
CGATGCATGTCCGTCGGACCTGACCTCGCGCTGAACAGTGCAATAGCGCG
TCGCTTCGAGGCACCTTTTGCTGGCATTCAGGATGCGGAACGTCTTGTGC
AGCAAATAACCAATACCACAGATGAGCTTTGTACGCTTTCTGTGCAACAG
CGGAACGTTCGCGTCAAGGCGTATCACGTGCTTGGAAGTCTTGCTACAAA
GCTGTGGAGTGTGCAGAGTAGTATGCAAGACGTAAGCCAGGATCGTGCAG
AAATTGTGGCAGAGAGTGAGCGACGAGGTGGTATGTCGCATTTGATGCGG
CGTGCGTTGCTGGGTGACAGAGGTCTTGCTGATATCAGTGACCTGAGAGT
GAACGGAGCCTACGTTGCTATTGGTATGTGTGTGGACTCTGTCGGGTGCT
CGTCTGCTTTGGCGTGGTTGTCTGGTGCGGAACAAATGGCAAGGGACTTT
AATCATGTCCCCCGGGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4211767..4213587-

>Gvermi12321.t1 ID=Gvermi12321.t1|Name=Gvermi12321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1821bp|location=Sequence derived from alignment at ScGOVlb_3404:4211767..4213587- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCGCTCTCGGAATTCGCCGCATTGCAGACATCCATGTCAGTCA
GGTTATGCAGGCAACTGATGCCGACATCCTCCACCTCCGCGCTGTCCTTC
GAGACTGGCATGTCGCCAACTTTCGCAACTGGCCGCTTCTCTTGCGCGCC
CTCACACACCCCAGCATTTCAAACTGGGCAGAGCGCACCTTGAATCTCAA
GAAGAGATCGCTCGGGCCCAACGCCTTGGAGCTCCTGGGAGATCGCGTCG
TCGGCACCTCCGTCGCCTTGCAGCTGCTGCGCTGGCAAACAACGGACCAA
TTCACCCAGTGTATTCCCGTCGTCAAGCCTTCCGCTTTGATGCGAACGTT
GGTCGGCAACCGTGGAATGGCCTTTGTTGCCAGACGTATCGGTATCCAAT
CCCTGCTGAGATGGGAGAAGCCATTGCCTCCGCAAGCGCATCGCCGTCGT
TTGGATCCCACTGGCGTGGACAGTGCCACGGGCCTCACGTGCAATACCGA
CATCAACGCGCTAGCAAACGCCTACGAGGCTGTAGCCGCCGCCATATACC
TCGATTCTGCGCTGCCATCGGCCCACTCGTTTGTGCGCCATACCTTGTTG
CACGACATGAAAACGGTGCAGCATGCCAACATGGAAGTTCCTCAGTATCA
AGAATCGCTCGCCAGGGAGCTTGGGGCCGTGCTCAAGCAGCAACTATCGT
TTGTCGCCTCCAGGCGGAGAAGGGGGCGTTCTCCGATGCTTCCGCTTGAC
TGTTTTGAACCTGTGCAGTGTGAGGTACTGGATCTGGAGCCAGAAGGCGT
AGAGAGGCGTGAACACGATCTGTTCTATTGCGCCATTGCTGTTCGAAAAC
GGGATCAACTGCACTCTCCCCTGAAAGAGGCCGACCTTCTCTGCGTCGCC
TCTCATTTTTCAGTCGAAACCGCAAGAATAGCCGCGTTAGAACATGCGAT
TGAAATGGTAAATGGCACCAAATCCGCACTTGAAAAAGTAGACGGTGCTG
GCACCAAACCGATGCGGCTTCAGCTGAGGAAATGCGTCTATGGGGAAGAC
GTTCCGACTTTGGAGACTCGGTTCTTGGGCGACGGACGCTGGCATCACGA
CGGAGACTACCGTCATTTGGCAACCCTTCTTGAGCGTGTCGGGGCCGCGG
GCACGGCCGGTTTGCACAAGCTCGATGCCGAGCAAATTCAGGGCAAAGTG
CAGGCGCTCCGTCGATGCGCCGGCGAGATGGACGGGGGCTGGGACGTGCA
CGATGGGCAATACGATGCCCTGCCTGCGTCCCACAAGGGCTCCGTGCGCA
GCCCCGTGAGAGCGGAAGGTGATCCTGCAATATGCCCGACCGCAGTCGCG
CGATGCATGTCCGTCGGACCTGACCTCGCGCTGAACAGTGCAATAGCGCG
TCGCTTCGAGGCACCTTTTGCTGGCATTCAGGATGCGGAACGTCTTGTGC
AGCAAATAACCAATACCACAGATGAGCTTTGTACGCTTTCTGTGCAACAG
CGGAACGTTCGCGTCAAGGCGTATCACGTGCTTGGAAGTCTTGCTACAAA
GCTGTGGAGTGTGCAGAGTAGTATGCAAGACGTAAGCCAGGATCGTGCAG
AAATTGTGGCAGAGAGTGAGCGACGAGGTGGTATGTCGCATTTGATGCGG
CGTGCGTTGCTGGGTGACAGAGGTCTTGCTGATATCAGTGACCTGAGAGT
GAACGGAGCCTACGTTGCTATTGGTATGTGTGTGGACTCTGTCGGGTGCT
CGTCTGCTTTGGCGTGGTTGTCTGGTGCGGAACAAATGGCAAGGGACTTT
AATCATGTCCCCCGGGGATGA
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