Gvermi12278.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12278.t1
Unique NameGvermi12278.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length371
Homology
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A2V3J0D5_9FLOR (Ribosome-binding factor A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0D5_9FLOR)

HSP 1 Score: 244 bits (622), Expect = 1.230e-75
Identity = 133/212 (62.74%), Postives = 163/212 (76.89%), Query Frame = 0
Query:  137 SQVHR---TKLRRCDIYCRRGSKHRDRRFGDGRRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMFEESQMAEAVNTVNIINEIAAENERKR-EMADFSRGSQTKDLYENDLFDKELELDASLDDAIIADDMEDYD----DSGLVIDVED 340
            SQV R   T  +R +I+CRRGSK R+RRF DGRR NRVSEL+KREIS +IDD YRRAF  +    PLL+SVVDVRCSDDLRHARV+VS++G+ +QK+N M+WL+ ARK LR +LA RVYLKHTPELMF+ESQMA+A NTVNI+N I AE ERK+ E+    +  Q  D YE D+FD+ L+LDASLDDAII DDM + +    DS  +ID+ED
Sbjct:   30 SQVPRRYATSRKRYEIHCRRGSKGRERRFSDGRRPNRVSELIKREISPIIDDAYRRAFRGELQESPLLVSVVDVRCSDDLRHARVEVSVLGTDDQKENIMRWLKAARKELRVELAHRVYLKHTPELMFDESQMAQATNTVNILNRITAEKERKQSELGGVGQKGQRLDAYERDMFDQGLDLDASLDDAIIVDDMREEEXXXXDSEFIIDIED 241          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A5J4Z6Z3_PORPP (Ribosome-binding factor A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6Z3_PORPP)

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-16
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYR-RAFFHD-KSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRV-YLKHTPELMFEESQMAEAVNTVNIINEIAAENERKREMADFSRGSQTKDLYENDLFDKELEL 313
            RR NRV+E++KREIS ++ D Y   A FH   S   L+LSV+DV  S DLR+AR++VS+  +       +KWL G R+ LR ++A+R+ ++K  P+L F+ES    A  TV+I++E+A + E      +F       D  + D  D+E +L
Sbjct:    4 RRPNRVAEMIKREISMVLRDQYTTHARFHGLPSWSTLMLSVMDVNVSPDLRNARIEVSM--AQADMSRVLKWLNGNRRTLRYEMAQRMTHMKIMPDLYFKESGAGGAFRTVSILDELAKKRELVAATTNFDDLEADSD--DEDASDEEFDL 150          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A0D6AME9_9CHRO (Ribosome-binding factor A n=2 Tax=Geminocystis TaxID=669357 RepID=A0A0D6AME9_9CHRO)

HSP 1 Score: 82.4 bits (202), Expect = 1.400e-15
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 0
Query:  162 FGDGRRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMF-EESQMAEAVNTVNIINEI 279
              + RR  +VS L+K+EIS ++  G +     D   G  ++S+ +V  S DL+HARV VSI G++E K  TM+ L+     +R  L +R+ L+HTPE+ F E+S + +  N +N+IN I
Sbjct:    1 MANSRRVEKVSSLIKKEISQMLISGIK-----DDRVGAGMVSITEVEISGDLQHARVFVSIYGTSEAKKETMEGLKACTPFVRKALGQRISLRHTPEIRFIEDSSLEKGDNLINLINRI 114          
BLAST of Gvermi12278.t1 vs. uniprot
Match: UPI001687FB58 (30S ribosome-binding factor RbfA n=1 Tax=Cyanobacteria TaxID=1117 RepID=UPI001687FB58)

HSP 1 Score: 80.9 bits (198), Expect = 5.780e-15
Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMF-EESQMAEAVNTVNIINEIAAENER 285
            RR  RV+EL+KRE+S ++  G +     D   G  ++SV DV+ + DL+HA++ VSI G++E K  TM  L+ A   +R +L +R+ L+ TPE++F E++ +      ++++N ++ E ER
Sbjct:    5 RRIERVAELIKREVSQMLLSGIK-----DDRVGAGIVSVTDVQVAGDLQHAKIFVSIYGTSEAKAETMAGLKSATGFVRSELGQRIRLRRTPEVLFLEDASLERGDKVLSLLNRLSQERER 120          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A2N5JSV1_9CYAN (Ribosome-binding factor A n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JSV1_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.950e-14
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMFEESQ-MAEAVNTVNIINEIAAENERK 286
            RR  RV+EL+KRE+SALI    +     D   G  ++S+  V  S DL+HARV VSI G+   +  TM+ L  A   +R +L  R+ L+  PE++F+E +   E V  ++++N+++AE E+K
Sbjct:    5 RRVERVAELIKREVSALIMRDIK-----DDRVGAGMVSITAVEVSGDLQHARVFVSIYGTDAARQETMEGLGAATSFIRRELGHRLNLRRAPEVVFKEDRSFEEGVKVLSLLNKLSAEREQK 121          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A2T1DVL6_9CYAN (Ribosome-binding factor A n=1 Tax=Stenomitos frigidus ULC18 TaxID=2107698 RepID=A0A2T1DVL6_9CYAN)

HSP 1 Score: 78.6 bits (192), Expect = 4.390e-14
Identity = 47/127 (37.01%), Postives = 79/127 (62.20%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMF-EESQMAEAVNTVNIINEIAAENERKREMAD 291
            RR  RVSEL+KRE+S ++  G +     D   G  ++SV DV+ + DL+HA++ VSI G++E K  TM  L+ A   +R +L +R+ L+ TPE++F E+S +      +++++ ++ E    RE+AD
Sbjct:    5 RRVARVSELIKREVSQMLLSGIK-----DDRVGSGIVSVTDVQVAGDLQHAKIFVSIYGTSEAKAETMAGLKSATGFVRSELGQRIRLRRTPEVIFLEDSSLERGDKVLSLLSRLSQE----RELAD 122          
BLAST of Gvermi12278.t1 vs. uniprot
Match: RBFA_ACET2 (Ribosome-binding factor A n=2 Tax=Acetivibrio thermocellus TaxID=1515 RepID=RBFA_ACET2)

HSP 1 Score: 76.3 bits (186), Expect = 2.250e-13
Identity = 45/126 (35.71%), Postives = 77/126 (61.11%), Query Frame = 0
Query:  167 RSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMFE-ESQMAEAVNTVNIINEIAAENERKREMAD 291
            R  R+SE +KREIS +I +  +     D     L+ S+ +V  + DLR+A+V VS+MGS E+K N+++ L+ A   +R ++ RRV L++TPE+ FE ++ +        +INE +A+N+  ++  D
Sbjct:    3 RIERISEEIKREISDIIQNELK-----DPRLSKLI-SITEVNVTKDLRYAKVYVSVMGSEEEKANSLEGLKSAAGFIRREIGRRVQLRYTPEIHFELDNSIERGAYITKLINETSAQNKGSKDPED 122          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A2E0FP89_9BACT (Ribosome-binding factor A n=1 Tax=Nitrospina sp. TaxID=2024844 RepID=A0A2E0FP89_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.020e-13
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMFEESQMAEAVNTVN-IINEIAAENERK 286
            +RS R+ EL+  EIS L+  G +     D   G   L+ V+V  SD+L+HA++ VS+MGS ++K +T+  L+ A+  +R  L + +YLK+ P+L F++ + AE V  +  I+NE+  E++ K
Sbjct:    4 KRSQRIQELLLEEISKLLQGGLK-----DPRIGFATLTRVEV--SDNLKHAKIFVSVMGSEKEKSDTLNALKSAKGFIRNTLGKNLYLKYLPDLEFKKDENAEHVEKITRILNELHPESDSK 118          
BLAST of Gvermi12278.t1 vs. uniprot
Match: D8FXY4_9CYAN (Ribosome-binding factor A n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8FXY4_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 6.530e-13
Identity = 49/137 (35.77%), Postives = 78/137 (56.93%), Query Frame = 0
Query:  166 RRSNRVSELVKREISALIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMF-EESQMAEAVNTVNIINEIAAENERKREMADFSRGSQTKDL 301
            RR  RVS L+KRE+S L+ +G +     D   G  ++SV DV  S DL+HA++ VSI G+ E K  TM  L+ A   +R +L  RV L+ TPE++F E+  +      + ++N+++   ERK ++ D    +   D+
Sbjct:    5 RRVERVSSLIKREVSLLLLNGIK-----DDRVGAGIVSVTDVDVSGDLQHAKIFVSIYGTDEAKAETMAGLKSATGYVRSELGHRVGLRRTPEVVFLEDHSLERGDKMLLLLNKLS--QERKPDILDEEESAPDDDI 134          
BLAST of Gvermi12278.t1 vs. uniprot
Match: A0A7X6ZQ64_9BACT (Ribosome-binding factor A n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X6ZQ64_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 7.290e-13
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 0
Query:  167 RSNRVSELVKREISA-LIDDGYRRAFFHDKSAGPLLLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARRVYLKHTPELMFEESQ-MAEAVNTVNIINEIAAENE 284
            R  R++ELV+RE+S+ L+  G      H        +S+V+V  S DLR A V VSIMGS EQ D  MKWLR  R  L+  +A+ V LK+TP L+F+++Q +A     + I++E+  + E
Sbjct:    5 RIKRLNELVRRELSSSLLHVG------HGDEIEVSRISIVEVDISRDLRSAGVLVSIMGSAEQADEIMKWLRSNRVELQSRIAKGVSLKYTPRLVFKQTQSIARGDRVLGILSELDIDEE 118          
The following BLAST results are available for this feature:
BLAST of Gvermi12278.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0D5_9FLOR1.230e-7562.74Ribosome-binding factor A n=1 Tax=Gracilariopsis c... [more]
A0A5J4Z6Z3_PORPP1.700e-1639.07Ribosome-binding factor A n=1 Tax=Porphyridium pur... [more]
A0A0D6AME9_9CHRO1.400e-1538.66Ribosome-binding factor A n=2 Tax=Geminocystis Tax... [more]
UPI001687FB585.780e-1536.3630S ribosome-binding factor RbfA n=1 Tax=Cyanobact... [more]
A0A2N5JSV1_9CYAN2.950e-1438.52Ribosome-binding factor A n=1 Tax=Cyanobacteria ba... [more]
A0A2T1DVL6_9CYAN4.390e-1437.01Ribosome-binding factor A n=1 Tax=Stenomitos frigi... [more]
RBFA_ACET22.250e-1335.71Ribosome-binding factor A n=2 Tax=Acetivibrio ther... [more]
A0A2E0FP89_9BACT3.020e-1336.89Ribosome-binding factor A n=1 Tax=Nitrospina sp. T... [more]
D8FXY4_9CYAN6.530e-1335.77Ribosome-binding factor A n=1 Tax=Kamptonema sp. P... [more]
A0A7X6ZQ64_9BACT7.290e-1340.83Ribosome-binding factor A n=1 Tax=Lentisphaerae ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000238Ribosome-binding factor ATIGRFAMTIGR00082TIGR00082coord: 166..280
e-value: 5.0E-16
score: 57.2
IPR000238Ribosome-binding factor APFAMPF02033RBFAcoord: 167..273
e-value: 7.2E-19
score: 68.2
IPR000238Ribosome-binding factor APANTHERPTHR33515RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATEDcoord: 163..354
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 163..270
e-value: 1.8E-21
score: 78.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..370
IPR023799Ribosome-binding factor A domain superfamilySUPERFAMILY89919Ribosome-binding factor A, RbfAcoord: 163..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4083594..4084706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12278.t1Gvermi12278.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4083594..4084706 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12278.t1 ID=Gvermi12278.t1|Name=Gvermi12278.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=371bp
MPPSVDPSVFFGNIDFLVNCLKLGDRRSSAIIDRTFIKSVRCAPVPPRSS
ARQLLASVSSAFRQFAQFEKLANLCGRLVAKTAEFEIKEADTPVTTLDSA
LAMEALAFASGMAVMQGFSSLRSSFTQNCTVHHSSRSQVHRTKLRRCDIY
CRRGSKHRDRRFGDGRRSNRVSELVKREISALIDDGYRRAFFHDKSAGPL
LLSVVDVRCSDDLRHARVQVSIMGSTEQKDNTMKWLRGARKGLRGDLARR
VYLKHTPELMFEESQMAEAVNTVNIINEIAAENERKREMADFSRGSQTKD
LYENDLFDKELELDASLDDAIIADDMEDYDDSGLVIDVEDADEDEECDES
HDKDIPRRTQRDMSRENLMR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000238RbfA
IPR015946KH_dom-like_a/b
IPR023799RbfA_dom_sf