Gvermi12487.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12487.t1
Unique Name	Gvermi12487.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	644

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:5357129..5359060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12487	Gvermi12487	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 5357129..5359060 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12487.t1.start1	Gvermi12487.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 5357129..5357131 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12487.t1.CDS1	Gvermi12487.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 5357129..5359060 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12487.t1.exon1	Gvermi12487.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 5357129..5359060 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12487.t1.stop1	Gvermi12487.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 5359058..5359060 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12487.t1	Gvermi12487.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 5357129..5359060 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:5357129..5359060+
coding sequence from alignment at ScGOVlb_3404:5357129..5359060+

mRNA sequence

>Gvermi12487.t1 ID=Gvermi12487.t1|Name=Gvermi12487.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=644bp
MTTEISPPKNTAETLDNLSATTGALIDAFDQIITLPFVDSLKIDALGDLS
IADVVLDLKQKYQELQGNTLPFARTLHAYAGLQLQTIPTINAGLDLSTYL
NLHKIIIARHKLEASNVKKQSETFRKTFVATLDVFQSTIKELGEQIQDLE
KQIQDTKDLQEKERAVAIIAGIFTFVFTVVAILAIVATAGAVSGASAGFF
ATLGASIGTAGGTSGLIAVSAASSTAALGGLAETIVSSIEARNFARAVSA
LETLKQSAETARDQLLEVVDLMTDIENSLEDIVSVWTDVENSLSIIQSDV
DSWNDENFSEELVASTLEEWEDVRTAVAKYTAVVSGDRNLNMEKQSDAHL
PADEIINLTRSFVISELQSNLHAPDIEFDGKLSDLYQMRSALETTKSLPN
IRDTLKSQITAALGYLGEVQTGLEQSSDELASFTKQRLTWLDAFEIAEVT
KRIDMVTQLEATVENFEVGIARAQETEAKAFLFQTSVGLVINTLIRIIGE
NNVKQHALKKKLEKLEKDRKRRKWLWVVPVAGAINEIVDAANNIRGKIKR
GRREIRLISNRCQQLRKLSSAVSSSVKDSTLVTQTYSSILNDTRAGIDDA
SIFEVFGAALPADLFVSLKESWIELELDIKEFKEQHVENKSDT*

spliced messenger RNA

>Gvermi12487.t1 ID=Gvermi12487.t1|Name=Gvermi12487.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at ScGOVlb_3404:5357129..5359060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACAGAAATCTCCCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATTGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTCTGAAAATCGACGCTCTGGGTGACTTGTCT
ATTGCAGATGTTGTGCTCGATCTGAAACAGAAGTATCAGGAATTGCAGGG
AAATACGTTACCCTTCGCCCGAACCTTACACGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACATACCTC
AACCTTCACAAAATTATCATCGCGAGGCACAAGCTCGAGGCATCCAACGT
CAAAAAACAAAGCGAAACTTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTCCAAAGCACAATAAAAGAGCTCGGCGAGCAAATCCAAGATCTTGAA
AAGCAGATTCAGGATACTAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTGTCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTATCTGGTGCGTCGGCAGGATTTTTC
GCAACCTTGGGTGCTTCCATAGGAACCGCTGGAGGGACATCAGGACTTAT
TGCGGTATCTGCAGCTTCTTCAACAGCTGCTCTTGGTGGCCTGGCAGAAA
CGATTGTTTCTTCAATCGAAGCCCGTAATTTCGCAAGAGCTGTATCTGCG
CTCGAGACTTTAAAACAAAGCGCCGAAACCGCCCGAGACCAACTTCTGGA
AGTCGTTGACCTCATGACTGACATTGAAAACTCGCTGGAAGATATTGTAT
CTGTATGGACTGACGTTGAGAACTCACTCAGCATTATTCAAAGCGATGTC
GACAGTTGGAACGACGAAAACTTTTCTGAGGAACTGGTGGCGTCTACGCT
TGAGGAGTGGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCAGTCG
TTTCCGGGGATCGAAATTTAAATATGGAGAAACAGTCAGATGCCCATCTG
CCTGCCGACGAAATCATCAATTTGACACGGAGCTTTGTAATTTCCGAACT
GCAATCAAACCTTCACGCACCGGACATTGAATTCGACGGCAAGCTTTCAG
ACCTTTACCAAATGCGTTCGGCGCTTGAAACAACAAAATCGTTACCAAAT
ATCCGAGACACTCTGAAATCCCAGATTACAGCCGCTTTGGGGTATTTAGG
TGAGGTACAAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCA
CAAAACAACGTCTGACATGGCTCGATGCTTTTGAAATTGCTGAAGTGACC
AAAAGGATTGATATGGTGACTCAACTCGAAGCCACAGTTGAGAATTTTGA
GGTTGGTATTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTTTTCC
AAACATCCGTTGGTCTCGTGATCAACACCCTTATCCGCATCATTGGTGAA
AATAATGTGAAGCAGCATGCTCTCAAAAAGAAACTGGAAAAGCTGGAAAA
AGACCGAAAGCGCAGGAAGTGGCTTTGGGTCGTACCGGTGGCTGGGGCTA
TCAATGAAATCGTTGACGCGGCGAATAACATTCGGGGCAAAATCAAGAGA
GGCCGGCGAGAAATACGGCTAATATCGAACCGTTGTCAGCAGCTTCGCAA
ACTCAGCAGTGCTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACAC
AAACGTACAGTTCAATTCTGAACGACACTCGTGCTGGTATTGACGATGCC
TCCATTTTCGAAGTATTTGGAGCCGCGCTCCCTGCAGACCTTTTTGTCTC
GCTCAAAGAATCATGGATTGAGTTGGAATTAGACATAAAGGAATTCAAGG
AGCAGCATGTGGAAAACAAGAGTGATACTTAA

protein sequence of Gvermi12487.t1

>Gvermi12487.t1 ID=Gvermi12487.t1|Name=Gvermi12487.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=644bp
MTTEISPPKNTAETLDNLSATTGALIDAFDQIITLPFVDSLKIDALGDLS
IADVVLDLKQKYQELQGNTLPFARTLHAYAGLQLQTIPTINAGLDLSTYL
NLHKIIIARHKLEASNVKKQSETFRKTFVATLDVFQSTIKELGEQIQDLE
KQIQDTKDLQEKERAVAIIAGIFTFVFTVVAILAIVATAGAVSGASAGFF
ATLGASIGTAGGTSGLIAVSAASSTAALGGLAETIVSSIEARNFARAVSA
LETLKQSAETARDQLLEVVDLMTDIENSLEDIVSVWTDVENSLSIIQSDV
DSWNDENFSEELVASTLEEWEDVRTAVAKYTAVVSGDRNLNMEKQSDAHL
PADEIINLTRSFVISELQSNLHAPDIEFDGKLSDLYQMRSALETTKSLPN
IRDTLKSQITAALGYLGEVQTGLEQSSDELASFTKQRLTWLDAFEIAEVT
KRIDMVTQLEATVENFEVGIARAQETEAKAFLFQTSVGLVINTLIRIIGE
NNVKQHALKKKLEKLEKDRKRRKWLWVVPVAGAINEIVDAANNIRGKIKR
GRREIRLISNRCQQLRKLSSAVSSSVKDSTLVTQTYSSILNDTRAGIDDA
SIFEVFGAALPADLFVSLKESWIELELDIKEFKEQHVENKSDT*

mRNA from alignment at ScGOVlb_3404:5357129..5359060+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12487.t1 ID=Gvermi12487.t1|Name=Gvermi12487.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at ScGOVlb_3404:5357129..5359060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACAGAAATCTCCCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATTGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTCTGAAAATCGACGCTCTGGGTGACTTGTCT
ATTGCAGATGTTGTGCTCGATCTGAAACAGAAGTATCAGGAATTGCAGGG
AAATACGTTACCCTTCGCCCGAACCTTACACGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACATACCTC
AACCTTCACAAAATTATCATCGCGAGGCACAAGCTCGAGGCATCCAACGT
CAAAAAACAAAGCGAAACTTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTCCAAAGCACAATAAAAGAGCTCGGCGAGCAAATCCAAGATCTTGAA
AAGCAGATTCAGGATACTAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTGTCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTATCTGGTGCGTCGGCAGGATTTTTC
GCAACCTTGGGTGCTTCCATAGGAACCGCTGGAGGGACATCAGGACTTAT
TGCGGTATCTGCAGCTTCTTCAACAGCTGCTCTTGGTGGCCTGGCAGAAA
CGATTGTTTCTTCAATCGAAGCCCGTAATTTCGCAAGAGCTGTATCTGCG
CTCGAGACTTTAAAACAAAGCGCCGAAACCGCCCGAGACCAACTTCTGGA
AGTCGTTGACCTCATGACTGACATTGAAAACTCGCTGGAAGATATTGTAT
CTGTATGGACTGACGTTGAGAACTCACTCAGCATTATTCAAAGCGATGTC
GACAGTTGGAACGACGAAAACTTTTCTGAGGAACTGGTGGCGTCTACGCT
TGAGGAGTGGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCAGTCG
TTTCCGGGGATCGAAATTTAAATATGGAGAAACAGTCAGATGCCCATCTG
CCTGCCGACGAAATCATCAATTTGACACGGAGCTTTGTAATTTCCGAACT
GCAATCAAACCTTCACGCACCGGACATTGAATTCGACGGCAAGCTTTCAG
ACCTTTACCAAATGCGTTCGGCGCTTGAAACAACAAAATCGTTACCAAAT
ATCCGAGACACTCTGAAATCCCAGATTACAGCCGCTTTGGGGTATTTAGG
TGAGGTACAAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCA
CAAAACAACGTCTGACATGGCTCGATGCTTTTGAAATTGCTGAAGTGACC
AAAAGGATTGATATGGTGACTCAACTCGAAGCCACAGTTGAGAATTTTGA
GGTTGGTATTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTTTTCC
AAACATCCGTTGGTCTCGTGATCAACACCCTTATCCGCATCATTGGTGAA
AATAATGTGAAGCAGCATGCTCTCAAAAAGAAACTGGAAAAGCTGGAAAA
AGACCGAAAGCGCAGGAAGTGGCTTTGGGTCGTACCGGTGGCTGGGGCTA
TCAATGAAATCGTTGACGCGGCGAATAACATTCGGGGCAAAATCAAGAGA
GGCCGGCGAGAAATACGGCTAATATCGAACCGTTGTCAGCAGCTTCGCAA
ACTCAGCAGTGCTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACAC
AAACGTACAGTTCAATTCTGAACGACACTCGTGCTGGTATTGACGATGCC
TCCATTTTCGAAGTATTTGGAGCCGCGCTCCCTGCAGACCTTTTTGTCTC
GCTCAAAGAATCATGGATTGAGTTGGAATTAGACATAAAGGAATTCAAGG
AGCAGCATGTGGAAAACAAGAGTGATACTTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:5357129..5359060+

>Gvermi12487.t1 ID=Gvermi12487.t1|Name=Gvermi12487.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1932bp|location=Sequence derived from alignment at ScGOVlb_3404:5357129..5359060+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACAGAAATCTCCCCCCCGAAGAACACCGCAGAGACTCTCGATAA
TCTCTCCGCCACTACAGGTGCTCTGATTGATGCATTTGATCAGATTATTA
CACTGCCTTTCGTCGACTCTCTGAAAATCGACGCTCTGGGTGACTTGTCT
ATTGCAGATGTTGTGCTCGATCTGAAACAGAAGTATCAGGAATTGCAGGG
AAATACGTTACCCTTCGCCCGAACCTTACACGCGTATGCTGGTCTTCAGC
TGCAAACCATTCCTACCATCAATGCTGGCTTGGATTTGAGCACATACCTC
AACCTTCACAAAATTATCATCGCGAGGCACAAGCTCGAGGCATCCAACGT
CAAAAAACAAAGCGAAACTTTTCGCAAAACATTTGTCGCAACTCTGGACG
TTTTCCAAAGCACAATAAAAGAGCTCGGCGAGCAAATCCAAGATCTTGAA
AAGCAGATTCAGGATACTAAGGATCTTCAGGAGAAGGAGCGAGCTGTCGC
TATTATAGCCGGCATCTTCACATTTGTCTTCACTGTGGTAGCCATCTTGG
CAATTGTCGCAACAGCGGGAGCTGTATCTGGTGCGTCGGCAGGATTTTTC
GCAACCTTGGGTGCTTCCATAGGAACCGCTGGAGGGACATCAGGACTTAT
TGCGGTATCTGCAGCTTCTTCAACAGCTGCTCTTGGTGGCCTGGCAGAAA
CGATTGTTTCTTCAATCGAAGCCCGTAATTTCGCAAGAGCTGTATCTGCG
CTCGAGACTTTAAAACAAAGCGCCGAAACCGCCCGAGACCAACTTCTGGA
AGTCGTTGACCTCATGACTGACATTGAAAACTCGCTGGAAGATATTGTAT
CTGTATGGACTGACGTTGAGAACTCACTCAGCATTATTCAAAGCGATGTC
GACAGTTGGAACGACGAAAACTTTTCTGAGGAACTGGTGGCGTCTACGCT
TGAGGAGTGGGAAGATGTCCGCACCGCAGTTGCGAAGTATACTGCAGTCG
TTTCCGGGGATCGAAATTTAAATATGGAGAAACAGTCAGATGCCCATCTG
CCTGCCGACGAAATCATCAATTTGACACGGAGCTTTGTAATTTCCGAACT
GCAATCAAACCTTCACGCACCGGACATTGAATTCGACGGCAAGCTTTCAG
ACCTTTACCAAATGCGTTCGGCGCTTGAAACAACAAAATCGTTACCAAAT
ATCCGAGACACTCTGAAATCCCAGATTACAGCCGCTTTGGGGTATTTAGG
TGAGGTACAAACAGGCCTGGAGCAGTCGTCAGATGAATTAGCCAGTTTCA
CAAAACAACGTCTGACATGGCTCGATGCTTTTGAAATTGCTGAAGTGACC
AAAAGGATTGATATGGTGACTCAACTCGAAGCCACAGTTGAGAATTTTGA
GGTTGGTATTGCTCGTGCCCAAGAAACTGAAGCAAAGGCATTCCTTTTCC
AAACATCCGTTGGTCTCGTGATCAACACCCTTATCCGCATCATTGGTGAA
AATAATGTGAAGCAGCATGCTCTCAAAAAGAAACTGGAAAAGCTGGAAAA
AGACCGAAAGCGCAGGAAGTGGCTTTGGGTCGTACCGGTGGCTGGGGCTA
TCAATGAAATCGTTGACGCGGCGAATAACATTCGGGGCAAAATCAAGAGA
GGCCGGCGAGAAATACGGCTAATATCGAACCGTTGTCAGCAGCTTCGCAA
ACTCAGCAGTGCTGTTTCTTCCTCTGTCAAGGATAGTACACTTGTTACAC
AAACGTACAGTTCAATTCTGAACGACACTCGTGCTGGTATTGACGATGCC
TCCATTTTCGAAGTATTTGGAGCCGCGCTCCCTGCAGACCTTTTTGTCTC
GCTCAAAGAATCATGGATTGAGTTGGAATTAGACATAAAGGAATTCAAGG
AGCAGCATGTGGAAAACAAGAGTGATACTTAA