Gvermi12243.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12243.t1
Unique NameGvermi12243.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Homology
BLAST of Gvermi12243.t1 vs. uniprot
Match: R7QB24_CHOCR (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB24_CHOCR)

HSP 1 Score: 198 bits (504), Expect = 3.960e-62
Identity = 103/133 (77.44%), Postives = 115/133 (86.47%), Query Frame = 0
Query:   12 QTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSEREIRRALAKAKEN--AETRKSVLEWAIPEEF 142
            +T+ S   A KLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERL+VE+ YADVP+GIFVIRGENVMLLGEVDEE+E+ VG+SMKQV+E EIRRALA  KE+  A  R   +EW IPEE+
Sbjct:   81 ETTQSGSGAIKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLTVEDSYADVPIGIFVIRGENVMLLGEVDEERELNVGSSMKQVTEPEIRRALAAIKEDRAARRRGEKVEWPIPEEY 213          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A293MTH1_ORNER (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=3 Tax=Ornithodoros TaxID=6937 RepID=A0A293MTH1_ORNER)

HSP 1 Score: 118 bits (295), Expect = 2.180e-31
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0
Query:   14 SPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSE-REIRRALAKAKENAETRKS 132
            S +++  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIF++RGENV+LLGE+D+EKE  V      V E  E++R  A+AK+  E +++
Sbjct:    2 SHNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDQEKERLVNLEEVSVQEILEVQRLEAEAKQERERQRA 121          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A1Z5L2V0_ORNMO (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L2V0_ORNMO)

HSP 1 Score: 115 bits (289), Expect = 7.130e-31
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   14 SPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRV 104
            S +++  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIF++RGENV+LLGE+DEE+E  V
Sbjct:    2 SQNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDEERERAV 92          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A507E1X1_9FUNG (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1X1_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 2.220e-30
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSEREIRRALAKAKENAETR 130
            LPG+ASL + +DK +LV LRD R   GWLRS+DQ+ANL+L +TVER  V + Y DV  GIFVIRGENV+LLGE+D+EKE  +  S+K V   E+R A  + +E  + R
Sbjct:    5 LPGSASLVDCVDKKILVILRDSRKLIGWLRSYDQFANLVLQDTVERTYVGDQYGDVYRGIFVIRGENVVLLGEIDKEKETALMKSLKNVPVAEVREAQKQEQERRKIR 112          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A6P7UPI0_IXOSC (U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7UPI0_IXOSC)

HSP 1 Score: 114 bits (285), Expect = 6.150e-30
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSER---EIRRALAKAKENAETRKS 132
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIFV+RG+NV+LLGE+DE KE  V   +++VS     E++R  A+AK++ E +++
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVRKQYGDIPRGIFVVRGDNVVLLGEIDEAKERDV--DLEEVSVEQILEVQRLEAEAKQDQERQRA 116          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A090X7S9_IXORI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A090X7S9_IXORI)

HSP 1 Score: 114 bits (285), Expect = 1.090e-29
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSER---EIRRALAKAKENAETRKS 132
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIFV+RG+NV+LLGE+DE KE  V   +++VS     E++R  A+AK++ E +++
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVRKQYGDIPRGIFVVRGDNVVLLGEIDEAKERDV--DLEEVSVEQILEVQRLEAEAKQDQERQRA 116          
BLAST of Gvermi12243.t1 vs. uniprot
Match: UPI00142558C8 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558C8)

HSP 1 Score: 113 bits (283), Expect = 1.310e-29
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSEREI 116
            LPG ASL E+LDK +LV LRDGR   G LRS DQ+ANL+L  T+ER+ V N Y D+P G+FVIRGENV+LLGE+D EK+ +V   +K+VS  EI
Sbjct:    7 LPGTASLIEELDKKLLVLLRDGRTLIGTLRSIDQFANLVLHKTIERIHVGNKYGDIPRGVFVIRGENVVLLGEIDSEKDPKV--ELKEVSIDEI 98          
BLAST of Gvermi12243.t1 vs. uniprot
Match: A0A7S3GS20_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GS20_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.520e-29
Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 0
Query:   19 DAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSEREIRRALA 121
            ++  LPGAASL EQ+D  +L+ LRDGRN  G LRSFDQY NLIL++T ER+  ++ Y D+P+G+F++RG+N++LLGEVDE+KE     ++++VS  E+   LA
Sbjct:    6 ESLYLPGAASLAEQIDTKILIVLRDGRNLVGILRSFDQYVNLILEDTYERVIFQDKYCDIPLGLFLVRGDNLILLGEVDEDKE--ASQNLEKVSPAELTELLA 106          
BLAST of Gvermi12243.t1 vs. uniprot
Match: L7M3M9_RHIPC (U6 snRNA-associated Sm-like protein LSm1 n=13 Tax=Ixodidae TaxID=6939 RepID=L7M3M9_RHIPC)

HSP 1 Score: 112 bits (281), Expect = 2.480e-29
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKE 101
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIFVIRG+NV+LLGE+DE+KE
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHQTIERIHVGRQYGDIPRGIFVIRGDNVVLLGEIDEDKE 84          
BLAST of Gvermi12243.t1 vs. uniprot
Match: UPI000C75A328 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75A328)

HSP 1 Score: 112 bits (281), Expect = 2.550e-29
Identity = 51/94 (54.26%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEKEMRVGNSMKQVSEREI 116
            LPG A+L E+LDK ++V LRDGR   G+LRS DQ+ANL++ N +ER+ V++ Y D+P+G+FV+RGENV+LLGE++E++E++    +KQVS +EI
Sbjct:    6 LPGTATLLEELDKKLMVLLRDGRTLIGYLRSVDQFANLVIHNCIERIHVKDEYGDIPLGVFVVRGENVVLLGEIEEKEELK--GKLKQVSLKEI 97          
The following BLAST results are available for this feature:
BLAST of Gvermi12243.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QB24_CHOCR3.960e-6277.44U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
A0A293MTH1_ORNER2.180e-3150.83U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
A0A1Z5L2V0_ORNMO7.130e-3158.24U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
A0A507E1X1_9FUNG2.220e-3054.63U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A6P7UPI0_IXOSC6.150e-3052.17U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=I... [more]
A0A090X7S9_IXORI1.090e-2952.17U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=I... [more]
UPI00142558C81.310e-2960.64U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A7S3GS20_9STRA1.520e-2952.43U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=S... [more]
L7M3M9_RHIPC2.480e-2964.20U6 snRNA-associated Sm-like protein LSm1 n=13 Tax=... [more]
UPI000C75A3282.550e-2954.26U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..95
e-value: 4.4E-15
score: 66.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 29..94
e-value: 1.3E-15
score: 56.9
NoneNo IPR availableGENE3D2.30.30.100coord: 26..138
e-value: 7.5E-31
score: 108.5
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 22..129
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 22..129
IPR034104Sm-like protein Lsm1CDDcd01728LSm1coord: 23..96
e-value: 7.7276E-39
score: 124.166
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 29..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3959438..3959866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12243.t1Gvermi12243.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3959438..3959866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12243.t1 ID=Gvermi12243.t1|Name=Gvermi12243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
MDDTAQLRSAPQTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVENMYADVPMGIFVIRGENVMLLGEVDEEK
EMRVGNSMKQVSEREIRRALAKAKENAETRKSVLEWAIPEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034104Lsm1
IPR010920LSM_dom_sf