Gvermi12282.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12282.t1
Unique NameGvermi12282.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4086959..4088110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12282Gvermi12282Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4086959..4088110 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12282.t1.stop1Gvermi12282.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4086959..4086961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12282.t1.CDS1Gvermi12282.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4086959..4088110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12282.t1.exon1Gvermi12282.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4086959..4088110 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12282.t1.start1Gvermi12282.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4088108..4088110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12282.t1Gvermi12282.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4086959..4088110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12282.t1 ID=Gvermi12282.t1|Name=Gvermi12282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp
LRGLCVHANARKTPNQKRTSRASKSKRVSAGNTSSTETGGFAAKQPSSTA
KLVDEDVQRETTSGEQGDETPHRAVTEPSFRKMENPEEDPLDAPIEPLVE
LPVLTKEQIKALRFDPKSRSDDVIEYFADAQKRDDFAEVIVANRDFVTEN
VLYRFTSAILQVEARAHDLETKEEEARNMRKLRKDLIAHCWSLDFPLKVG
VQLAEERLLKVLKGGNIKSDVGRYCGSSTIEVDSLWIVIFAAVAAWEERG
RENPELANVDMQKSLALAADACKTLKVVNDYLSPSLKAVQDILMSADPEV
QRKVVADFDDETIAEIGSFTEKIRLLPTPAYGALVRRLKSIRDYVRSEKY
GIEPPTLEPFRFIPDEIKRQSKLTTLSDTKRSV*
back to top

spliced messenger RNA

>Gvermi12282.t1 ID=Gvermi12282.t1|Name=Gvermi12282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at ScGOVlb_3404:4086959..4088110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGAGGACTGTGCGTCCATGCGAATGCTCGCAAAACACCGAACCAAAA
GCGAACGTCACGGGCTTCCAAGAGCAAAAGGGTCTCTGCAGGGAATACGT
CCTCGACAGAAACTGGCGGTTTTGCTGCAAAACAACCATCTAGCACCGCC
AAATTAGTGGATGAAGACGTGCAAAGAGAGACAACGTCTGGAGAGCAAGG
AGATGAAACCCCGCATCGGGCAGTAACTGAGCCTTCGTTCAGAAAGATGG
AGAACCCGGAAGAGGATCCGTTAGATGCCCCTATAGAGCCCTTGGTTGAA
CTTCCTGTACTTACAAAGGAGCAAATCAAGGCCCTTCGTTTCGACCCAAA
GTCTCGCTCAGACGATGTCATTGAGTATTTTGCAGATGCCCAAAAGCGCG
ACGATTTTGCGGAGGTGATCGTCGCTAATCGAGATTTCGTGACAGAAAAC
GTCCTTTACCGTTTCACAAGTGCTATTCTTCAAGTTGAAGCACGAGCCCA
TGATCTAGAGACCAAGGAAGAAGAAGCACGAAACATGCGGAAGTTGCGCA
AAGATCTTATTGCGCACTGTTGGAGCTTGGATTTTCCGCTCAAGGTTGGC
GTCCAGTTGGCCGAAGAACGTTTGCTCAAAGTGTTAAAAGGTGGAAACAT
AAAATCTGATGTTGGACGATACTGCGGGAGCAGTACCATAGAAGTCGACT
CGCTGTGGATTGTGATTTTCGCAGCAGTCGCCGCGTGGGAGGAACGTGGT
AGGGAAAATCCCGAGCTCGCGAATGTGGATATGCAAAAGTCTTTAGCTCT
TGCTGCAGATGCCTGTAAGACGTTGAAGGTCGTGAATGACTACCTAAGTC
CCTCATTAAAGGCAGTGCAGGACATTTTGATGTCTGCAGATCCAGAAGTT
CAACGAAAGGTTGTCGCAGACTTTGATGATGAGACTATTGCTGAAATCGG
CTCGTTCACAGAGAAGATACGATTGTTACCAACACCGGCGTATGGGGCTC
TCGTTCGACGGTTAAAGTCGATAAGAGACTATGTGCGTTCTGAAAAGTAC
GGTATAGAGCCGCCAACGTTGGAACCATTCCGATTCATTCCAGATGAAAT
CAAGAGGCAGTCAAAACTAACGACGTTGTCTGACACAAAAAGGTCCGTCT
AA
back to top

protein sequence of Gvermi12282.t1

>Gvermi12282.t1 ID=Gvermi12282.t1|Name=Gvermi12282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=384bp
LRGLCVHANARKTPNQKRTSRASKSKRVSAGNTSSTETGGFAAKQPSSTA
KLVDEDVQRETTSGEQGDETPHRAVTEPSFRKMENPEEDPLDAPIEPLVE
LPVLTKEQIKALRFDPKSRSDDVIEYFADAQKRDDFAEVIVANRDFVTEN
VLYRFTSAILQVEARAHDLETKEEEARNMRKLRKDLIAHCWSLDFPLKVG
VQLAEERLLKVLKGGNIKSDVGRYCGSSTIEVDSLWIVIFAAVAAWEERG
RENPELANVDMQKSLALAADACKTLKVVNDYLSPSLKAVQDILMSADPEV
QRKVVADFDDETIAEIGSFTEKIRLLPTPAYGALVRRLKSIRDYVRSEKY
GIEPPTLEPFRFIPDEIKRQSKLTTLSDTKRSV*
back to top

mRNA from alignment at ScGOVlb_3404:4086959..4088110-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12282.t1 ID=Gvermi12282.t1|Name=Gvermi12282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at ScGOVlb_3404:4086959..4088110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGAGGACTGTGCGTCCATGCGAATGCTCGCAAAACACCGAACCAAAA
GCGAACGTCACGGGCTTCCAAGAGCAAAAGGGTCTCTGCAGGGAATACGT
CCTCGACAGAAACTGGCGGTTTTGCTGCAAAACAACCATCTAGCACCGCC
AAATTAGTGGATGAAGACGTGCAAAGAGAGACAACGTCTGGAGAGCAAGG
AGATGAAACCCCGCATCGGGCAGTAACTGAGCCTTCGTTCAGAAAGATGG
AGAACCCGGAAGAGGATCCGTTAGATGCCCCTATAGAGCCCTTGGTTGAA
CTTCCTGTACTTACAAAGGAGCAAATCAAGGCCCTTCGTTTCGACCCAAA
GTCTCGCTCAGACGATGTCATTGAGTATTTTGCAGATGCCCAAAAGCGCG
ACGATTTTGCGGAGGTGATCGTCGCTAATCGAGATTTCGTGACAGAAAAC
GTCCTTTACCGTTTCACAAGTGCTATTCTTCAAGTTGAAGCACGAGCCCA
TGATCTAGAGACCAAGGAAGAAGAAGCACGAAACATGCGGAAGTTGCGCA
AAGATCTTATTGCGCACTGTTGGAGCTTGGATTTTCCGCTCAAGGTTGGC
GTCCAGTTGGCCGAAGAACGTTTGCTCAAAGTGTTAAAAGGTGGAAACAT
AAAATCTGATGTTGGACGATACTGCGGGAGCAGTACCATAGAAGTCGACT
CGCTGTGGATTGTGATTTTCGCAGCAGTCGCCGCGTGGGAGGAACGTGGT
AGGGAAAATCCCGAGCTCGCGAATGTGGATATGCAAAAGTCTTTAGCTCT
TGCTGCAGATGCCTGTAAGACGTTGAAGGTCGTGAATGACTACCTAAGTC
CCTCATTAAAGGCAGTGCAGGACATTTTGATGTCTGCAGATCCAGAAGTT
CAACGAAAGGTTGTCGCAGACTTTGATGATGAGACTATTGCTGAAATCGG
CTCGTTCACAGAGAAGATACGATTGTTACCAACACCGGCGTATGGGGCTC
TCGTTCGACGGTTAAAGTCGATAAGAGACTATGTGCGTTCTGAAAAGTAC
GGTATAGAGCCGCCAACGTTGGAACCATTCCGATTCATTCCAGATGAAAT
CAAGAGGCAGTCAAAACTAACGACGTTGTCTGACACAAAAAGGTCCGTCT
AA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4086959..4088110-

>Gvermi12282.t1 ID=Gvermi12282.t1|Name=Gvermi12282.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1152bp|location=Sequence derived from alignment at ScGOVlb_3404:4086959..4088110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGAGGACTGTGCGTCCATGCGAATGCTCGCAAAACACCGAACCAAAA
GCGAACGTCACGGGCTTCCAAGAGCAAAAGGGTCTCTGCAGGGAATACGT
CCTCGACAGAAACTGGCGGTTTTGCTGCAAAACAACCATCTAGCACCGCC
AAATTAGTGGATGAAGACGTGCAAAGAGAGACAACGTCTGGAGAGCAAGG
AGATGAAACCCCGCATCGGGCAGTAACTGAGCCTTCGTTCAGAAAGATGG
AGAACCCGGAAGAGGATCCGTTAGATGCCCCTATAGAGCCCTTGGTTGAA
CTTCCTGTACTTACAAAGGAGCAAATCAAGGCCCTTCGTTTCGACCCAAA
GTCTCGCTCAGACGATGTCATTGAGTATTTTGCAGATGCCCAAAAGCGCG
ACGATTTTGCGGAGGTGATCGTCGCTAATCGAGATTTCGTGACAGAAAAC
GTCCTTTACCGTTTCACAAGTGCTATTCTTCAAGTTGAAGCACGAGCCCA
TGATCTAGAGACCAAGGAAGAAGAAGCACGAAACATGCGGAAGTTGCGCA
AAGATCTTATTGCGCACTGTTGGAGCTTGGATTTTCCGCTCAAGGTTGGC
GTCCAGTTGGCCGAAGAACGTTTGCTCAAAGTGTTAAAAGGTGGAAACAT
AAAATCTGATGTTGGACGATACTGCGGGAGCAGTACCATAGAAGTCGACT
CGCTGTGGATTGTGATTTTCGCAGCAGTCGCCGCGTGGGAGGAACGTGGT
AGGGAAAATCCCGAGCTCGCGAATGTGGATATGCAAAAGTCTTTAGCTCT
TGCTGCAGATGCCTGTAAGACGTTGAAGGTCGTGAATGACTACCTAAGTC
CCTCATTAAAGGCAGTGCAGGACATTTTGATGTCTGCAGATCCAGAAGTT
CAACGAAAGGTTGTCGCAGACTTTGATGATGAGACTATTGCTGAAATCGG
CTCGTTCACAGAGAAGATACGATTGTTACCAACACCGGCGTATGGGGCTC
TCGTTCGACGGTTAAAGTCGATAAGAGACTATGTGCGTTCTGAAAAGTAC
GGTATAGAGCCGCCAACGTTGGAACCATTCCGATTCATTCCAGATGAAAT
CAAGAGGCAGTCAAAACTAACGACGTTGTCTGACACAAAAAGGTCCGTCT
AA
back to top