Gvermi12387.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12387.t1
Unique NameGvermi12387.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length127
Homology
BLAST of Gvermi12387.t1 vs. uniprot
Match: R7QDD7_CHOCR (Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD7_CHOCR)

HSP 1 Score: 212 bits (540), Expect = 4.100e-69
Identity = 113/125 (90.40%), Postives = 120/125 (96.00%), Query Frame = 0
Query:    2 PKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  K VP AEKK+AKKG+SGG VEKTT++KKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIA+E+AKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    3 PKG-NKGVPTAEKKIAKKGVSGGAVEKTTKRKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIASESAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126          
BLAST of Gvermi12387.t1 vs. uniprot
Match: A0A2V3J066_9FLOR (Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J066_9FLOR)

HSP 1 Score: 207 bits (526), Expect = 5.240e-67
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 0
Query:    6 GKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVPVAEKKVAKKGIS  G EK++RKKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKL+SYN+TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPVAEKKVAKKGISA-GPEKSSRKKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLSSYNHTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Gvermi12387.t1 vs. uniprot
Match: Q7XY84_GRIJA (Histone H2B n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY84_GRIJA)

HSP 1 Score: 200 bits (509), Expect = 2.050e-64
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 0
Query:    6 GKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP+AEKKVAKK + G   EK T+KKKRSESYSIYIYKVLKQVHP+TGISSKAMSIMNSFV DLFERIATEAAKLA+YNN+KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPIAEKKVAKKAVPG-ATEKVTKKKKRSESYSIYIYKVLKQVHPETGISSKAMSIMNSFVDDLFERIATEAAKLATYNNSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Gvermi12387.t1 vs. uniprot
Match: A0A1X6P9Y0_PORUM (Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9Y0_PORUM)

HSP 1 Score: 190 bits (482), Expect = 3.030e-60
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0
Query:    6 GKSVPVAEKKVAKKGISGGGVEKTTRK--KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP+AEKKVAKKG++    +   +K  KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA EAAKL+SYN +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPIAEKKVAKKGVASADKDGKDKKRTKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIAAEAAKLSSYNKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 127          
BLAST of Gvermi12387.t1 vs. uniprot
Match: A0A1X6NSL0_PORUM (Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSL0_PORUM)

HSP 1 Score: 192 bits (488), Expect = 3.620e-60
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0
Query:    6 GKSVPVAEKKVAKKGISG----GGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP+AEKKVAKKG++      G +K  R KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA EAAKL+SYN +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:   74 GKSVPMAEKKVAKKGVAATSDKDGKDKKKRTKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIAAEAAKLSSYNKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 198          
BLAST of Gvermi12387.t1 vs. uniprot
Match: M2VZY7_GALSU (Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZY7_GALSU)

HSP 1 Score: 173 bits (439), Expect = 8.360e-54
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 0
Query:    2 PKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS 125
            PKG  KSVPVA KK        G  EK   KKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV D+FERIA+E++KLA+Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+S
Sbjct:    3 PKG-SKSVPVAGKKPI------GKAEKRKSKKKRAESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASESSKLAAYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 119          
BLAST of Gvermi12387.t1 vs. uniprot
Match: A0A7S0XIQ2_9RHOD (Histone H2B n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XIQ2_9RHOD)

HSP 1 Score: 174 bits (441), Expect = 1.340e-53
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0
Query:    2 PKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS 125
            PKG  KS+P A          GG  +K +RKKKR ESYSIY+YKVLKQVHP+TGISSKAMSIMNSFV DLFERIA E+AKLA Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS
Sbjct:   34 PKG-SKSLPAAXXXXXXXXXXGGDADKKSRKKKRVESYSIYVYKVLKQVHPETGISSKAMSIMNSFVNDLFERIAAESAKLAQYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS 156          
BLAST of Gvermi12387.t1 vs. uniprot
Match: M2XSM4_GALSU (Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSM4_GALSU)

HSP 1 Score: 170 bits (431), Expect = 1.380e-52
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0
Query:    2 PKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  KSVPVA KK   K      V++   KKKRSE+YSIYIYKVLKQVHPDTGIS KAMSIMNSFV D+FERIA+EA+KL++Y+ +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+SS
Sbjct:    3 PKG-AKSVPVAGKKPIPK------VDRKKSKKKRSETYSIYIYKVLKQVHPDTGISGKAMSIMNSFVNDIFERIASEASKLSAYSKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 120          
BLAST of Gvermi12387.t1 vs. uniprot
Match: M1V980_CYAM1 (Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1V980_CYAM1)

HSP 1 Score: 166 bits (420), Expect = 6.150e-51
Identity = 93/113 (82.30%), Postives = 101/113 (89.38%), Query Frame = 0
Query:   14 KKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            KKVAK   S   ++K  +K+KR E+YSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA+EA+KLA YN TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+SS
Sbjct:   10 KKVAKAPAS---IDK--KKRKRLETYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIASEASKLAQYNKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 117          
BLAST of Gvermi12387.t1 vs. uniprot
Match: A0A5J4Z3W2_PORPP (Histone H2B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W2_PORPP)

HSP 1 Score: 166 bits (419), Expect = 1.060e-50
Identity = 97/125 (77.60%), Postives = 102/125 (81.60%), Query Frame = 0
Query:    2 PKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  KS+PVAEKK   K +             R+ESYSIYIYKVLKQVHPDTGISS AMSIMNSFV DLFERIA EAAKL+SY+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    3 PKG-TKSLPVAEKKP--KQVIKXXXXXXXXXXXRTESYSIYIYKVLKQVHPDTGISSNAMSIMNSFVTDLFERIAAEAAKLSSYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
The following BLAST results are available for this feature:
BLAST of Gvermi12387.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QDD7_CHOCR4.100e-6990.40Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A2V3J066_9FLOR5.240e-6793.39Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=44... [more]
Q7XY84_GRIJA2.050e-6489.26Histone H2B n=1 Tax=Griffithsia japonica TaxID=832... [more]
A0A1X6P9Y0_PORUM3.030e-6084.55Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=278... [more]
A0A1X6NSL0_PORUM3.620e-6084.80Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=278... [more]
M2VZY7_GALSU8.360e-5479.03Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=13... [more]
A0A7S0XIQ2_9RHOD1.340e-5377.42Histone H2B n=2 Tax=Erythrolobus madagascarensis T... [more]
M2XSM4_GALSU1.380e-5276.80Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=13... [more]
M1V980_CYAM16.150e-5182.30Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepI... [more]
A0A5J4Z3W2_PORPP1.060e-5077.60Histone H2B n=1 Tax=Porphyridium purpureum TaxID=3... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 97..110
score: 94.9
coord: 80..97
score: 58.47
coord: 58..78
score: 77.41
coord: 39..57
score: 87.67
coord: 110..123
score: 95.85
IPR000558Histone H2BSMARTSM00427h2b3coord: 29..125
e-value: 8.7E-68
score: 241.2
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 2..126
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 94..116
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 13..102
e-value: 2.6E-20
score: 73.1
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 4..126
e-value: 1.4E-58
score: 198.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 11..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR23428:SF252HISTONE H2Bcoord: 2..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4463265..4463645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12387.t1Gvermi12387.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4463265..4463645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12387.t1 ID=Gvermi12387.t1|Name=Gvermi12387.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=127bp
MPKGGGKSVPVAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQV
HPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAV
RLLLPGELAKHAVSEGTKAVTKYSSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold