Gvermi12155.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12155.t1
Unique NameGvermi12155.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Homology
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A2V3IY66_9FLOR (Putative oxidoreductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY66_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 1.080e-68
Identity = 130/240 (54.17%), Postives = 161/240 (67.08%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRR-GAVLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSKFTVYG 239
            +GRATA  L + GA LT+S+R +P+L  LA +L      +V+P DVTD  A+A A R VL   P                         +D VLDTN R+VAHLF+ LLP L++R  A+LCA+SS+AAYRGV G SVY+ASKAALT  CQAL +ELY S+V VVCVHPGFV T AI+ L +P PFLLT  QAA  IV AIAM+Y+HYGFPW+MEHVVL  S C+PT +YN++M K + YG
Sbjct:   45 IGRATALHLASLGAKLTISSRPSPSLNQLADQLDKNL-VSVVPFDVTDRQALAHAVRSVLNG-PPIDVVIANAGINHDNLPFSALSETQVDRVLDTNFRSVAHLFSLLLPHLKQRPDALLCAISSMAAYRGVNGGSVYSASKAALTTFCQALDVELYHSSVSVVCVHPGFVLTSAISHLKNPKPFLLTPHQAAVEIVNAIAMKYSHYGFPWLMEHVVLPFSTCVPTSVYNYLMPKLSTYG 282          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A418X4V6_9BURK (SDR family oxidoreductase n=2 Tax=Herbaspirillum sp. K2R10-39 TaxID=2320862 RepID=A0A418X4V6_9BURK)

HSP 1 Score: 119 bits (297), Expect = 6.920e-29
Identity = 87/240 (36.25%), Postives = 120/240 (50.00%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRR------RGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A+R    GA L L AR  P L  L  RLP   R  +  LDVTD AA+AAAA+  +AAA                        AA + +L TNV A    F   + A++       R   L  + S+A  RG+ GA  Y+ASKAA+ + C++L +EL AS ++VV + PG++ TP     ++P PFL+   + A   V AI    ++   PW M  VV  L   LP P+Y+F  SK
Sbjct:   20 IGAALAQRYAEQGAMLGLVARRQPLLEELRARLPHPERHRIYALDVTDHAALAAAAQDFIAAAGGADVVIANAGISQGTLTEYAEDLAAFERILATNVSATVATFGPFIAAMKAQSQAGSRACRLVGIGSVAGIRGLPGAEAYSASKAAVISYCESLRVELRASGIKVVTIAPGYIDTPMTQVNSYPMPFLMAVERFAAQAVAAIDAGVSYRVIPWQMG-VVAKLLRMLPNPLYDFAFSK 258          
BLAST of Gvermi12155.t1 vs. uniprot
Match: UPI001C7E2137 (SDR family oxidoreductase n=1 Tax=Noviherbaspirillum sp. NCCP-691 TaxID=2849687 RepID=UPI001C7E2137)

HSP 1 Score: 115 bits (289), Expect = 8.890e-28
Identity = 87/240 (36.25%), Postives = 120/240 (50.00%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRR------RGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A R    GA L L+AR  P LR LA RLP A +  V PLDVTDAAA+ AAA   + A                         A  + +L TNV A    F+  +  ++R      R   L  ++S+A  RG+ GA+ Y+ASKAA+ + C++L +EL  S VRVV + PG++ TP      +P PFL+   + A   VEAI    ++   PW M  VV  L   LP  +Y+   S+
Sbjct:   13 IGEALAMRYAEQGAILGLAARREPQLRELAARLPNAQKHRVYPLDVTDAAALRAAAEDFIVANGGCDVVIANAGISRGTLTEIADDLAVFERILATNVSATFATFSPFIGTMKRQAQAGSRDCRLVGIASVAGIRGLPGAAGYSASKAAVISYCESLRVELARSGVRVVTIAPGYIDTPMTRVNRYPMPFLMPAPEFARRAVEAIDAGVSYRVIPWQMG-VVAKLLRLLPNALYDLAFSR 251          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A418XSB1_9BURK (SDR family oxidoreductase n=2 Tax=unclassified Massilia TaxID=2609279 RepID=A0A418XSB1_9BURK)

HSP 1 Score: 113 bits (282), Expect = 8.690e-27
Identity = 84/236 (35.59%), Postives = 116/236 (49.15%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGAV--LCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A    A GATL L AR    L  LA  LP   R  V  LDVTD AA+AAAA   +AA                            D++L TNV A    FA  + +++ +G V  L  + S+A  RG+ GA  Y+ASKAA+ + C++L +EL    +RVV + PG++ TP      +P PFL+   + A    +AIA   ++   PW M  VV  L   LP  +Y+F  S+
Sbjct:   13 IGAALAAEYAARGATLGLVARRRELLEQLAAGLPNPGRHKVYALDVTDHAALAAAAADFIAAHGGADVVIANAGISHGTLTEFAADMPVFDSILATNVSATVATFAPFIASMKSQGGVRRLVGIGSVAGVRGLPGAGAYSASKAAVLSYCESLRLELKHDGIRVVTIAPGYIDTPMTRHNKYPMPFLMPPERFATKAADAIAAGTSYAVIPWQMG-VVAKLLRALPNAVYDFAFSR 247          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A2G8THE3_9BURK (Short-chain dehydrogenase n=1 Tax=Massilia eurypsychrophila TaxID=1485217 RepID=A0A2G8THE3_9BURK)

HSP 1 Score: 111 bits (278), Expect = 3.290e-26
Identity = 86/236 (36.44%), Postives = 115/236 (48.73%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGA--VLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A      GATL L AR   ALR LA  LP A    V  +DVTD AA+AAAA   +AA                          A DA+  TNV A    FA  + A++ RG    L  + S+A  RG+ GA  Y+ASKAA+ A C++L +E+    +RVV + PG++ TP      +P PFL+     AE    AIA+  ++   PW M  VV  L   LP  +Y+   S+
Sbjct:   13 IGEALAREYALQGATLGLLARRGDALRRLAASLPNAGLHKVYAVDVTDRAALAAAAADFIAAGGADIVIANAGVSQGTLTEHAEDL-VAFDAIFATNVSATVATFAPFIAAMKTRGGSPTLVGIGSVAGIRGLPGAGAYSASKAAVLAYCESLRLEMKPYGIRVVTIAPGYIDTPMTRHNPYPMPFLMPAATFAEKATIAIAVGASYRVIPWQMG-VVAKLLRALPNAVYDLAFSR 246          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A4Y9RIJ1_9BURK (SDR family oxidoreductase n=1 Tax=Oxalobacteraceae bacterium OM1 TaxID=2561929 RepID=A0A4Y9RIJ1_9BURK)

HSP 1 Score: 111 bits (278), Expect = 3.750e-26
Identity = 87/240 (36.25%), Postives = 116/240 (48.33%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGAV------LCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A AER    GATL L AR   AL AL  RLP A R  V  LDVTD AA+AAAA   + A                         AA + +L TNV A    FA  +  ++R+ A       L  + S+A  RG+ GA  Y+ASKAA+   C++L +EL  S ++VV + PG++ TP      +P PFL+   + A   V AI     +   PW M      L L LP  +Y+F  +K
Sbjct:   13 IGAALAERYAEQGATLGLVARRGDALDALRTRLPNAERHRVYALDVTDHAALAAAAADFIRANGGADVVIANAGISQGTLTEYPEDLAAFERILATNVTATFATFAPFIATMKRQAAAGSRDCRLVGIGSVAGVRGLPGAGGYSASKAAVRTYCESLRVELRGSGIKVVTIAPGYIDTPMTRKNRYPMPFLMPVERFAHQAVAAINAGTRYRVIPWQMGVAATVLRL-LPDALYDFAFAK 251          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A1S9ALU2_9BURK (Short-chain dehydrogenase n=1 Tax=Massilia sp. KIM TaxID=1955422 RepID=A0A1S9ALU2_9BURK)

HSP 1 Score: 109 bits (272), Expect = 2.960e-25
Identity = 83/236 (35.17%), Postives = 117/236 (49.58%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGAV--LCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A    A GATL L AR    L +LA  LP A R  + PLDVTD AA+AAAA+  +A                             ++V  TNV A+A  FA  +  ++ +     L  + S+A  RG+ GA  Y ASKAA+ + C++L +EL AS +RVV + PG++ TP  +    P PFL+   + A     AIA   ++   PW M  V   L L LP  +++ V S+
Sbjct:   20 IGAALAREYAARGATLGLVARRRELLASLAASLPGAGRHHIYPLDVTDHAALAAAAQDFIAREGGADIVIASAGISHGTLTERPEDLPVFESVFATNVHAMAATFAPFIAPMKAQAGPRRLVGIGSVAGIRGMRGAGAYCASKAAVHSYCESLRLELRASGIRVVTIAPGYIDTPMTSNNRFPMPFLMNAERFAAQAAAAIARGASYRVLPWQMGFVARLLRL-LPNFLFDAVFSR 254          
BLAST of Gvermi12155.t1 vs. uniprot
Match: UPI001B83EBC8 (SDR family oxidoreductase n=1 Tax=Massilia sp. ST3 TaxID=2824903 RepID=UPI001B83EBC8)

HSP 1 Score: 106 bits (264), Expect = 4.360e-24
Identity = 83/236 (35.17%), Postives = 113/236 (47.88%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGAV--LCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A    A GA L L AR    L  LA  LP A R  + PLDV D AA+A AA   L A                            +AV  TNV A    FA  + A++ +     L  + S+A  RG+ GA  Y ASKAA+ + C++L +EL+ SN+RVV + PG++ATP       P PFL++  + A     AIA   ++   PW M  V   L L LP  +++ V S+
Sbjct:   20 IGAALAHEYAARGAVLGLVARRRELLAELAAALPGAGRHRIYPLDVCDHAALAQAAADFLQAHGGADIVIASAGISHGTLTERPQDLPVFEAVFATNVGATVATFAPFIAAMKTQAGPCRLVGIGSVAGIRGMRGAGAYCASKAAVHSYCESLRLELHDSNIRVVTIAPGYIATPMTRNNRFPMPFLMSAERFAAQAAAAIARGDSYRVLPWQMGLVARLLRL-LPNALFDAVFSR 254          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A5J4Z5M3_PORPP (Putative oxidoreductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5M3_PORPP)

HSP 1 Score: 108 bits (271), Expect = 4.420e-24
Identity = 84/239 (35.15%), Postives = 120/239 (50.21%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALAR---RLPPAARAAVLPLDVTDAA-AVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRRRGA------VLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYN 229
            +G A  +RL A GA +T+SAR+  AL  +A    +L       V PLDVT  A A+ +A   ++                             I  V+D N+  VA+     L  +    +      V+  VSSL+AYRG+ G SVY ASKAA + L +AL +E Y   ++   ++PGFVATPAI  L+HP PF ++    AE +++A+A     YGFP+ MEHV +  S  LP  +Y 
Sbjct:  158 IGEALVKRLVALGARVTVSARNEAALHRVAASAVKLAQGGNVHVQPLDVTAGAEAIQSAHGAIVRRMGRIEILIANAGVNHGGKCFKELKYEEIARVVDVNLLGVAYCIRVCLNDMLELASSTAPHPVIAVVSSLSAYRGLPGGSVYGASKAAASHLLEALRVENYGCGIQFTSLNPGFVATPAIEHLHHPKPFQISSDTCAELMLDAVASGKRDYGFPFFMEHVAMRFSRVLPGCLYE 396          
BLAST of Gvermi12155.t1 vs. uniprot
Match: A0A4Q3K8M0_9BURK (SDR family oxidoreductase n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A4Q3K8M0_9BURK)

HSP 1 Score: 105 bits (263), Expect = 6.610e-24
Identity = 80/240 (33.33%), Postives = 118/240 (49.17%), Query Frame = 0
Query:    1 MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAAAVAAAARRVLAAAPXXXXXXXXXXXXXXXXXXXXXXPAAIDAVLDTNVRAVAHLFARLLPALRR------RGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQALAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIAMEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSK 234
            +G A A    A GA L L AR    L+ LA  LP +AR  +  LDVTD AA+AAAA   +AAA                           + V+ TN+ A    F   + A+RR      RG  L  ++S+A  RG+ GA+ Y+ASKAA+ + C++L +E+    + VV + PG++ TP      +P PFL+   + A   V++I    ++   PW M  VV  L   LP  +Y+F  ++
Sbjct:   18 LGAALAREYAARGAVLGLVARRESMLQELAATLPGSARHRIYALDVTDHAALAAAAADFIAAAGGCDVVIANAGISVGTLTEIAGDLPQFERVVATNLNATVATFMPFIAAMRRQAQAGERGCRLVGIASVAGIRGLPGAAAYSASKAAVISYCESLRVEMRRDRIAVVTIAPGYIDTPMTQSNAYPMPFLMPADRFAARAVDSIDAGVSYRVIPWQMG-VVARLLRLLPNWLYDFAFAR 256          
The following BLAST results are available for this feature:
BLAST of Gvermi12155.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY66_9FLOR1.080e-6854.17Putative oxidoreductase n=1 Tax=Gracilariopsis cho... [more]
A0A418X4V6_9BURK6.920e-2936.25SDR family oxidoreductase n=2 Tax=Herbaspirillum s... [more]
UPI001C7E21378.890e-2836.25SDR family oxidoreductase n=1 Tax=Noviherbaspirill... [more]
A0A418XSB1_9BURK8.690e-2735.59SDR family oxidoreductase n=2 Tax=unclassified Mas... [more]
A0A2G8THE3_9BURK3.290e-2636.44Short-chain dehydrogenase n=1 Tax=Massilia eurypsy... [more]
A0A4Y9RIJ1_9BURK3.750e-2636.25SDR family oxidoreductase n=1 Tax=Oxalobacteraceae... [more]
A0A1S9ALU2_9BURK2.960e-2535.17Short-chain dehydrogenase n=1 Tax=Massilia sp. KIM... [more]
UPI001B83EBC84.360e-2435.17SDR family oxidoreductase n=1 Tax=Massilia sp. ST3... [more]
A0A5J4Z5M3_PORPP4.420e-2435.15Putative oxidoreductase n=1 Tax=Porphyridium purpu... [more]
A0A4Q3K8M0_9BURK6.610e-2433.33SDR family oxidoreductase n=1 Tax=Oxalobacteraceae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 111..127
score: 20.1
coord: 158..175
score: 35.22
coord: 137..156
score: 40.58
coord: 64..75
score: 30.75
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 1..178
e-value: 1.9E-36
score: 125.4
NoneNo IPR availableGENE3D3.40.50.720coord: 1..236
e-value: 1.6E-51
score: 177.0
NoneNo IPR availablePIRSRPIRSR000094-3PIRSR000094-3coord: 6..180
e-value: 1.9E-5
score: 21.8
NoneNo IPR availablePANTHERPTHR44196DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7Bcoord: 2..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 124..152
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 1..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3619897..3620616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1Gvermi12155.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3619897..3620616 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAA
AVAAAARRVLAAAPPVDVVLACAGVNHANRPFAALPPAAIDAVLDTNVRA
VAHLFARLLPALRRRGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQA
LAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIA
MEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSKFTVYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR036291NAD(P)-bd_dom_sf