Gvermi12155.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12155.t1
Unique NameGvermi12155.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3619897..3620616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707441.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
Evalue2.32e-28
EggNOG OGsCOG1028@1|root,KOG1205@2759|Eukaryota
Descriptionoxidation-reduction process
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12155Gvermi12155Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3619897..3620616 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1.start1Gvermi12155.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3619897..3619899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1.CDS1Gvermi12155.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3619897..3620616 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1.exon1Gvermi12155.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3619897..3620616 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1.stop1Gvermi12155.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3620614..3620616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12155.t1Gvermi12155.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3619897..3620616 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=240bp
MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAA
AVAAAARRVLAAAPPVDVVLACAGVNHANRPFAALPPAAIDAVLDTNVRA
VAHLFARLLPALRRRGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQA
LAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIA
MEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSKFTVYG*
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spliced messenger RNA

>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_3404:3619897..3620616+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggggcgcgccacggccgagcggctgggcgcggccggcgccacgctgac
gctgtcggcgcgctcggcgcccgcgctgcgcgcgctggcgcgccgcctgc
cgccggccgcgcgcgccgccgtgctgccgctggacgtgacggacgccgcc
gccgtggccgccgccgcgcgccgcgtgctggccgccgcgccgcccgtcga
cgtggtgctggcgtgcgccggcgtcaaccacgccaaccgcccgttcgccg
cgctgccgcccgccgccatcgacgccgtgctggacaccaacgtgcgcgcc
gtcgcccacctgttcgcgcgcctgctccccgcgctgcgccgccgcggcgc
cgtgctgtgcgccgtctcgtcgctcgccgcgtaccgcggcgtcgccggcg
cctccgtctacgccgccagcaaggccgccctcaccgccctgtgccaggcg
ctcgccatcgagctgtacgcctccaacgtgcgcgtcgtgtgcgtccaccc
cggctttgtggccacccccgccatcgccggcctcaaccaccccaccccct
tcctgctcaccgagcgccaggccgcCGAGCACATTGTGGAGGCCATTGCC
ATGGAGTACGCGCACTACGGCTTCCCGTGGGTCATGGAGCACGTCGTGCT
CAACCTGTCGCTGTGCCTTCCCACCCCCATCTACAACTTTGTCATGTCCA
AGTTCACCGTATACGGATGA
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protein sequence of Gvermi12155.t1

>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MGRATAERLGAAGATLTLSARSAPALRALARRLPPAARAAVLPLDVTDAA
AVAAAARRVLAAAPPVDVVLACAGVNHANRPFAALPPAAIDAVLDTNVRA
VAHLFARLLPALRRRGAVLCAVSSLAAYRGVAGASVYAASKAALTALCQA
LAIELYASNVRVVCVHPGFVATPAIAGLNHPTPFLLTERQAAEHIVEAIA
MEYAHYGFPWVMEHVVLNLSLCLPTPIYNFVMSKFTVYG*
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mRNA from alignment at ScGOVlb_3404:3619897..3620616+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_3404:3619897..3620616+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggggcgcgccacggccgagcggctgggcgcggccggcgccacgctgac
gctgtcggcgcgctcggcgcccgcgctgcgcgcgctggcgcgccgcctgc
cgccggccgcgcgcgccgccgtgctgccgctggacgtgacggacgccgcc
gccgtggccgccgccgcgcgccgcgtgctggccgccgcgccgcccgtcga
cgtggtgctggcgtgcgccggcgtcaaccacgccaaccgcccgttcgccg
cgctgccgcccgccgccatcgacgccgtgctggacaccaacgtgcgcgcc
gtcgcccacctgttcgcgcgcctgctccccgcgctgcgccgccgcggcgc
cgtgctgtgcgccgtctcgtcgctcgccgcgtaccgcggcgtcgccggcg
cctccgtctacgccgccagcaaggccgccctcaccgccctgtgccaggcg
ctcgccatcgagctgtacgcctccaacgtgcgcgtcgtgtgcgtccaccc
cggctttgtggccacccccgccatcgccggcctcaaccaccccaccccct
tcctgctcaccgagcgccaggccgcCGAGCACATTGTGGAGGCCATTGCC
ATGGAGTACGCGCACTACGGCTTCCCGTGGGTCATGGAGCACGTCGTGCT
CAACCTGTCGCTGTGCCTTCCCACCCCCATCTACAACTTTGTCATGTCCA
AGTTCACCGTATACGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3619897..3620616+

>Gvermi12155.t1 ID=Gvermi12155.t1|Name=Gvermi12155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=720bp|location=Sequence derived from alignment at ScGOVlb_3404:3619897..3620616+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggggcgcgccacggccgagcggctgggcgcggccggcgccacgctgac
gctgtcggcgcgctcggcgcccgcgctgcgcgcgctggcgcgccgcctgc
cgccggccgcgcgcgccgccgtgctgccgctggacgtgacggacgccgcc
gccgtggccgccgccgcgcgccgcgtgctggccgccgcgccgcccgtcga
cgtggtgctggcgtgcgccggcgtcaaccacgccaaccgcccgttcgccg
cgctgccgcccgccgccatcgacgccgtgctggacaccaacgtgcgcgcc
gtcgcccacctgttcgcgcgcctgctccccgcgctgcgccgccgcggcgc
cgtgctgtgcgccgtctcgtcgctcgccgcgtaccgcggcgtcgccggcg
cctccgtctacgccgccagcaaggccgccctcaccgccctgtgccaggcg
ctcgccatcgagctgtacgcctccaacgtgcgcgtcgtgtgcgtccaccc
cggctttgtggccacccccgccatcgccggcctcaaccaccccaccccct
tcctgctcaccgagcgccaggccgcCGAGCACATTGTGGAGGCCATTGCC
ATGGAGTACGCGCACTACGGCTTCCCGTGGGTCATGGAGCACGTCGTGCT
CAACCTGTCGCTGTGCCTTCCCACCCCCATCTACAACTTTGTCATGTCCA
AGTTCACCGTATACGGATGA
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