Gvermi11538.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi11538.t1
Unique Name	Gvermi11538.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	150

Homology

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BLAST of Gvermi11538.t1 vs. uniprot
Match: A0A2V3IN16_9FLOR (Nuclear cap-binding protein subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN16_9FLOR)

HSP 1 Score: 160 bits (404), Expect = 2.620e-45
Identity = 87/167 (52.10%), Postives = 112/167 (67.07%), Query Frame = 0

Query:    1 MDEVVDDAPKDKMDDGEGGGKGLAVAGEGSLSEELTWRSGKPFEKGDTLVPIWIRQATEKDKRPEMPNPKSKWSRSMTSKKRSTXXXXXXXXXXXXXXXXKGDSEATEVAQKQSRRG------------------ASLGVHQDRKIAILKAQTKKVTKMDLDRALGS 149
            MD++V+ AP+D+MDDG G G GL+VA +G+L+EELTWRSGKPFEKG+ L+PIWIRQATEKD+RPEMPNPKSKWSR++ +KKR +                +  S++   A    RR                   ++ GVH D+K+AILKAQT+KVT+MDLDRAL S
Sbjct:  195 MDDIVESAPEDRMDDGAGAGLGLSVAADGTLAEELTWRSGKPFEKGNVLLPIWIRQATEKDRRPEMPNPKSKWSRTVNTKKRISQ---------------RRSSDSATTADAARRRXXXXXXXXXXXXXXXXXXXSAPGVHHDKKMAILKAQTRKVTRMDLDRALES 346

The following BLAST results are available for this feature:

BLAST of Gvermi11538.t1 vs. uniprot

BLAST of Gvermi11538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IN16_9FLOR	2.620e-45	52.10	Nuclear cap-binding protein subunit 3 n=1 Tax=Grac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..149

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:766539..766988 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11538.t1	Gvermi11538.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_3404 766539..766988 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=150bp
MDEVVDDAPKDKMDDGEGGGKGLAVAGEGSLSEELTWRSGKPFEKGDTLV
PIWIRQATEKDKRPEMPNPKSKWSRSMTSKKRSTSSRRSNDSKNSRRRRR
KGDSEATEVAQKQSRRGASLGVHQDRKIAILKAQTKKVTKMDLDRALGS*