Gvermi11538.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11538.t1
Unique NameGvermi11538.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:766539..766988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN121CT
PFAMsNCBP3
Max annot lvl2759|Eukaryota
Evalue0.000563
EggNOG OGs2D02E@1|root,2SCIC@2759|Eukaryota
DescriptionPfam:DUF2414
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11538Gvermi11538Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 766539..766988 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11538.t1.stop1Gvermi11538.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 766539..766541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11538.t1.CDS1Gvermi11538.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 766539..766988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11538.t1.exon1Gvermi11538.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 766539..766988 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11538.t1.start1Gvermi11538.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 766986..766988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11538.t1Gvermi11538.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 766539..766988 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=150bp
MDEVVDDAPKDKMDDGEGGGKGLAVAGEGSLSEELTWRSGKPFEKGDTLV
PIWIRQATEKDKRPEMPNPKSKWSRSMTSKKRSTSSRRSNDSKNSRRRRR
KGDSEATEVAQKQSRRGASLGVHQDRKIAILKAQTKKVTKMDLDRALGS*
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spliced messenger RNA

>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp|location=Sequence derived from alignment at ScGOVlb_3404:766539..766988- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGTTGTGGATGACGCTCCGAAGGACAAGATGGATGACGGCGA
AGGCGGTGGTAAGGGGTTGGCTGTGGCCGGGGAGGGCTCGCTCAGCGAGG
AGCTGACATGGCGAAGTGGAAAGCCGTTTGAAAAGGGCGACACGCTTGTT
CCGATCTGGATTCGGCAGGCTACAGAGAAGGACAAGAGGCCGGAGATGCC
GAATCCGAAGAGCAAGTGGAGTCGCAGCATGACCAGCAAGAAGCGGTCTA
CCTCCAGCCGTCGGTCGAACGACAGCAAAAACAGTCGTAGACGGCGACGA
AAGGGCGATAGCGAGGCCACGGAGGTGGCACAGAAGCAAAGTCGAAGAGG
AGCATCACTCGGGGTGCATCAAGACCGCAAGATAGCTATTCTCAAGGCGC
AAACAAAAAAGGTGACAAAGATGGATCTAGACCGAGCTCTAGGCTCCTAG
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protein sequence of Gvermi11538.t1

>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=150bp
MDEVVDDAPKDKMDDGEGGGKGLAVAGEGSLSEELTWRSGKPFEKGDTLV
PIWIRQATEKDKRPEMPNPKSKWSRSMTSKKRSTSSRRSNDSKNSRRRRR
KGDSEATEVAQKQSRRGASLGVHQDRKIAILKAQTKKVTKMDLDRALGS*
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mRNA from alignment at ScGOVlb_3404:766539..766988-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp|location=Sequence derived from alignment at ScGOVlb_3404:766539..766988- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGAGGTTGTGGATGACGCTCCGAAGGACAAGATGGATGACGGCGA
AGGCGGTGGTAAGGGGTTGGCTGTGGCCGGGGAGGGCTCGCTCAGCGAGG
AGCTGACATGGCGAAGTGGAAAGCCGTTTGAAAAGGGCGACACGCTTGTT
CCGATCTGGATTCGGCAGGCTACAGAGAAGGACAAGAGGCCGGAGATGCC
GAATCCGAAGAGCAAGTGGAGTCGCAGCATGACCAGCAAGAAGCGGTCTA
CCTCCAGCCGTCGGTCGAACGACAGCAAAAACAGTCGTAGACGGCGACGA
AAGGGCGATAGCGAGGCCACGGAGGTGGCACAGAAGCAAAGTCGAAGAGG
AGCATCACTCGGGGTGCATCAAGACCGCAAGATAGCTATTCTCAAGGCGC
AAACAAAAAAGGTGACAAAGATGGATCTAGACCGAGCTCTAGGCTCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:766539..766988-

>Gvermi11538.t1 ID=Gvermi11538.t1|Name=Gvermi11538.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=450bp|location=Sequence derived from alignment at ScGOVlb_3404:766539..766988- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGAGGTTGTGGATGACGCTCCGAAGGACAAGATGGATGACGGCGA
AGGCGGTGGTAAGGGGTTGGCTGTGGCCGGGGAGGGCTCGCTCAGCGAGG
AGCTGACATGGCGAAGTGGAAAGCCGTTTGAAAAGGGCGACACGCTTGTT
CCGATCTGGATTCGGCAGGCTACAGAGAAGGACAAGAGGCCGGAGATGCC
GAATCCGAAGAGCAAGTGGAGTCGCAGCATGACCAGCAAGAAGCGGTCTA
CCTCCAGCCGTCGGTCGAACGACAGCAAAAACAGTCGTAGACGGCGACGA
AAGGGCGATAGCGAGGCCACGGAGGTGGCACAGAAGCAAAGTCGAAGAGG
AGCATCACTCGGGGTGCATCAAGACCGCAAGATAGCTATTCTCAAGGCGC
AAACAAAAAAGGTGACAAAGATGGATCTAGACCGAGCTCTAGGCTCCTAG
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