Gvermi12311.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12311.t1
Unique NameGvermi12311.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4166026..4166889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703751.1
Preferred nameYIPF3
PFAMsYip1
Max annot lvl2759|Eukaryota
KEGG koko:K00688,ko:K15149
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
Evalue1.5e-14
EggNOG OGsKOG3114@1|root,KOG3114@2759|Eukaryota
EC2.4.1.1
DescriptionRab GTPase binding
COG categoryS
CAZyGT35
BRITEko00000,ko00001,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12311Gvermi12311Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4166026..4166889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12311.t1.stop1Gvermi12311.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4166026..4166028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12311.t1.CDS1Gvermi12311.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4166026..4166889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12311.t1.exon1Gvermi12311.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4166026..4166889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12311.t1.start1Gvermi12311.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4166887..4166889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12311.t1Gvermi12311.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4166026..4166889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12311.t1 ID=Gvermi12311.t1|Name=Gvermi12311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=288bp
MTASGASSAPLSAAALDASYAPVSTGESSSANQFALYDDGVSDDGADTGR
WESEPAGTRSEPRFYHPRFYAAYFDINVADLATRLFRALLPYKPLLGWTD
VDEDQVGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETASL
APSISSVEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSITQSSVGSH
PLVGTVMVYGYSMTPVVVAAFVATLPIRTAQIASMAVAFGIGAFVIMLNL
WRDVSVQHRSLTYFVRLIAVLAHAAVGTALIFIFFLR*
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spliced messenger RNA

>Gvermi12311.t1 ID=Gvermi12311.t1|Name=Gvermi12311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4166026..4166889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCTCTGGCGCCTCCTCGGCGCCGTTGTCGGCGGCCGCGCTCGA
TGCCTCGTACGCGCCCGTCTCTACAGGCGAGAGTTCGTCCGCTAATCAAT
TCGCGCTTTACGACGATGGCGTCTCCGACGATGGCGCCGACACCGGCCGC
TGGGAGAGTGAGCCGGCTGGAACTCGGTCTGAGCCGCGTTTCTACCACCC
CCGCTTCTATGCCGCCTACTTTGACATAAATGTCGCAGACCTCGCAACCC
GCCTGTTTCGCGCCTTGCTTCCGTACAAGCCATTGCTGGGCTGGACCGAC
GTTGACGAGGACCAGGTGGGCGGCACCTCCGTCCCGGATCTCTACGCTCC
CGTCTGGGTGACGACCACGCTCGTACTCGCGCTTTCCATGGGCGCTAAAT
GCGCCGAGTTCTTGGCAAATGTCTTCCGGAAGAAGGAAACAGCTTCGTTA
GCTCCTTCGATTTCAAGCGTTGAGTTCTCGCGCTTGTGGCGTGCTGCGTC
TGTGCTCTATTTCTACGTGTTTGTCTTTCCAGTCGTGCTTACCTTGTTCC
AGTGCCTGTTTGCAAAGCGCTCCATCACACAATCGTCTGTCGGATCACAT
CCGCTCGTCGGCACCGTCATGGTGTACGGTTATTCTATGACACCGGTTGT
TGTGGCAGCCTTTGTGGCCACCCTACCCATTCGCACCGCTCAAATTGCTT
CCATGGCTGTTGCATTTGGCATAGGCGCCTTCGTCATTATGCTCAATCTT
TGGAGGGATGTTTCCGTGCAGCATCGTTCGCTCACGTACTTTGTGCGCCT
CATAGCCGTTTTGGCACATGCTGCCGTGGGCACGGCTCTTATTTTCATTT
TCTTTCTGCGATGA
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protein sequence of Gvermi12311.t1

>Gvermi12311.t1 ID=Gvermi12311.t1|Name=Gvermi12311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=288bp
MTASGASSAPLSAAALDASYAPVSTGESSSANQFALYDDGVSDDGADTGR
WESEPAGTRSEPRFYHPRFYAAYFDINVADLATRLFRALLPYKPLLGWTD
VDEDQVGGTSVPDLYAPVWVTTTLVLALSMGAKCAEFLANVFRKKETASL
APSISSVEFSRLWRAASVLYFYVFVFPVVLTLFQCLFAKRSITQSSVGSH
PLVGTVMVYGYSMTPVVVAAFVATLPIRTAQIASMAVAFGIGAFVIMLNL
WRDVSVQHRSLTYFVRLIAVLAHAAVGTALIFIFFLR*
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mRNA from alignment at ScGOVlb_3404:4166026..4166889-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12311.t1 ID=Gvermi12311.t1|Name=Gvermi12311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4166026..4166889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGCCTCTGGCGCCTCCTCGGCGCCGTTGTCGGCGGCCGCGCTCGA
TGCCTCGTACGCGCCCGTCTCTACAGGCGAGAGTTCGTCCGCTAATCAAT
TCGCGCTTTACGACGATGGCGTCTCCGACGATGGCGCCGACACCGGCCGC
TGGGAGAGTGAGCCGGCTGGAACTCGGTCTGAGCCGCGTTTCTACCACCC
CCGCTTCTATGCCGCCTACTTTGACATAAATGTCGCAGACCTCGCAACCC
GCCTGTTTCGCGCCTTGCTTCCGTACAAGCCATTGCTGGGCTGGACCGAC
GTTGACGAGGACCAGGTGGGCGGCACCTCCGTCCCGGATCTCTACGCTCC
CGTCTGGGTGACGACCACGCTCGTACTCGCGCTTTCCATGGGCGCTAAAT
GCGCCGAGTTCTTGGCAAATGTCTTCCGGAAGAAGGAAACAGCTTCGTTA
GCTCCTTCGATTTCAAGCGTTGAGTTCTCGCGCTTGTGGCGTGCTGCGTC
TGTGCTCTATTTCTACGTGTTTGTCTTTCCAGTCGTGCTTACCTTGTTCC
AGTGCCTGTTTGCAAAGCGCTCCATCACACAATCGTCTGTCGGATCACAT
CCGCTCGTCGGCACCGTCATGGTGTACGGTTATTCTATGACACCGGTTGT
TGTGGCAGCCTTTGTGGCCACCCTACCCATTCGCACCGCTCAAATTGCTT
CCATGGCTGTTGCATTTGGCATAGGCGCCTTCGTCATTATGCTCAATCTT
TGGAGGGATGTTTCCGTGCAGCATCGTTCGCTCACGTACTTTGTGCGCCT
CATAGCCGTTTTGGCACATGCTGCCGTGGGCACGGCTCTTATTTTCATTT
TCTTTCTGCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4166026..4166889-

>Gvermi12311.t1 ID=Gvermi12311.t1|Name=Gvermi12311.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4166026..4166889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGCCTCTGGCGCCTCCTCGGCGCCGTTGTCGGCGGCCGCGCTCGA
TGCCTCGTACGCGCCCGTCTCTACAGGCGAGAGTTCGTCCGCTAATCAAT
TCGCGCTTTACGACGATGGCGTCTCCGACGATGGCGCCGACACCGGCCGC
TGGGAGAGTGAGCCGGCTGGAACTCGGTCTGAGCCGCGTTTCTACCACCC
CCGCTTCTATGCCGCCTACTTTGACATAAATGTCGCAGACCTCGCAACCC
GCCTGTTTCGCGCCTTGCTTCCGTACAAGCCATTGCTGGGCTGGACCGAC
GTTGACGAGGACCAGGTGGGCGGCACCTCCGTCCCGGATCTCTACGCTCC
CGTCTGGGTGACGACCACGCTCGTACTCGCGCTTTCCATGGGCGCTAAAT
GCGCCGAGTTCTTGGCAAATGTCTTCCGGAAGAAGGAAACAGCTTCGTTA
GCTCCTTCGATTTCAAGCGTTGAGTTCTCGCGCTTGTGGCGTGCTGCGTC
TGTGCTCTATTTCTACGTGTTTGTCTTTCCAGTCGTGCTTACCTTGTTCC
AGTGCCTGTTTGCAAAGCGCTCCATCACACAATCGTCTGTCGGATCACAT
CCGCTCGTCGGCACCGTCATGGTGTACGGTTATTCTATGACACCGGTTGT
TGTGGCAGCCTTTGTGGCCACCCTACCCATTCGCACCGCTCAAATTGCTT
CCATGGCTGTTGCATTTGGCATAGGCGCCTTCGTCATTATGCTCAATCTT
TGGAGGGATGTTTCCGTGCAGCATCGTTCGCTCACGTACTTTGTGCGCCT
CATAGCCGTTTTGGCACATGCTGCCGTGGGCACGGCTCTTATTTTCATTT
TCTTTCTGCGATGA
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