Gvermi784.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi784.t1
Unique NameGvermi784.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length697
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:248847..250937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC011CT
Preferred nameABCD3
PFAMsABC_membrane_2,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue1.24e-229
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota
DescriptionATP-binding cassette sub-family D
COG categoryG
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi784Gvermi784Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 248847..250937 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi784.t1.start1Gvermi784.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 248847..248849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi784.t1.CDS1Gvermi784.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 248847..250937 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi784.t1.exon1Gvermi784.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 248847..250937 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi784.t1.stop1Gvermi784.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 250935..250937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi784.t1Gvermi784.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 248847..250937 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=697bp
MTNAFSVLARQPRAALATAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPQ
AHLPPALASASPPPARVDLRFVKTVASFLRVVIRAPPSQEASVLALVAVL
LAARSWLDLWASSNGGHVVKAIVARDRRNFVRRAVLDIALMMFPMSFVNN
SLRYSIARLKLLMRRRLSLYMHDKYLSNNTFYKLSNLDARIRNVDQLLTV
DIDRFCSSLVDLYCNVSKPVFDIFLFSRRLSRSLGPSGPLCMIMYFAACS
VILRAIQPPFGQLAAEEQRLEGEYRLHHTRLITHSEEIAFFGGAAREKLY
INHAFENLVAHLNKFFAARWRNGFVDAILVKYVATIVGYLVVSLPVFFID
SPIYRLFSSSNVNAETTSASKIAGLYTRNSRLLLQLAAAIGRLVLAGKEV
TRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHLAHMMRPGK
LVVADEDDPESSIRFESVNIVSPDGTILCEGLSLKMERGCHVLTTGPNGC
GKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLAMGSLRENVTYPM
TWPEAMAVGATDEKIMQLLERVHLGDVARRRDGLDAVKDWAEVLSGGQKQ
RLAFGRLLFHAPQYAILDEASSAVSIDVEKVLYEAVKEAGITVISVSHRP
SLWQFHDRVLAFDGSGGYEFRDIGDEDFRNLESGRAGAEEMAAESA*
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spliced messenger RNA

>Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc
taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA
ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA
GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC
GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG
CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA
CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG
CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT
TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT
CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC
TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG
GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC
CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC
TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT
GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA
GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC
ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC
ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC
CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG
CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC
TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC
GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT
TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC
ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT
CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT
CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA
TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC
GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC
TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC
GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG
CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC
GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG
ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA
GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC
TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA
CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT
TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG
AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG
AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG
GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG
GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA
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protein sequence of Gvermi784.t1

>Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=697bp
MTNAFSVLARQPRAALATAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPQ
AHLPPALASASPPPARVDLRFVKTVASFLRVVIRAPPSQEASVLALVAVL
LAARSWLDLWASSNGGHVVKAIVARDRRNFVRRAVLDIALMMFPMSFVNN
SLRYSIARLKLLMRRRLSLYMHDKYLSNNTFYKLSNLDARIRNVDQLLTV
DIDRFCSSLVDLYCNVSKPVFDIFLFSRRLSRSLGPSGPLCMIMYFAACS
VILRAIQPPFGQLAAEEQRLEGEYRLHHTRLITHSEEIAFFGGAAREKLY
INHAFENLVAHLNKFFAARWRNGFVDAILVKYVATIVGYLVVSLPVFFID
SPIYRLFSSSNVNAETTSASKIAGLYTRNSRLLLQLAAAIGRLVLAGKEV
TRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHLAHMMRPGK
LVVADEDDPESSIRFESVNIVSPDGTILCEGLSLKMERGCHVLTTGPNGC
GKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLAMGSLRENVTYPM
TWPEAMAVGATDEKIMQLLERVHLGDVARRRDGLDAVKDWAEVLSGGQKQ
RLAFGRLLFHAPQYAILDEASSAVSIDVEKVLYEAVKEAGITVISVSHRP
SLWQFHDRVLAFDGSGGYEFRDIGDEDFRNLESGRAGAEEMAAESA*
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mRNA from alignment at ScGOVlb_2952:248847..250937+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:248847..250937+

>Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc
taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA
ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA
GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC
GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG
CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA
CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG
CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT
TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT
CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC
TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG
GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC
CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC
TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT
GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA
GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC
ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC
ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC
CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG
CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC
TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC
GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT
TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC
ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT
CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT
CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA
TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC
GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC
TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC
GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG
CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC
GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG
ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA
GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC
TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA
CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT
TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG
AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG
AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG
GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG
GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA
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