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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMC011CT |
| Preferred name | ABCD3 |
| PFAMs | ABC_membrane_2,ABC_tran |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05677 |
| KEGG TC | 3.A.1.203.1 |
| KEGG Pathway | ko02010,ko04146,map02010,map04146 |
| GOs | GO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351 |
| Evalue | 1.24e-229 |
| EggNOG OGs | COG4178@1|root,KOG0060@2759|Eukaryota |
| Description | ATP-binding cassette sub-family D |
| COG category | G |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=697bp MTNAFSVLARQPRAALATAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPQ AHLPPALASASPPPARVDLRFVKTVASFLRVVIRAPPSQEASVLALVAVL LAARSWLDLWASSNGGHVVKAIVARDRRNFVRRAVLDIALMMFPMSFVNN SLRYSIARLKLLMRRRLSLYMHDKYLSNNTFYKLSNLDARIRNVDQLLTV DIDRFCSSLVDLYCNVSKPVFDIFLFSRRLSRSLGPSGPLCMIMYFAACS VILRAIQPPFGQLAAEEQRLEGEYRLHHTRLITHSEEIAFFGGAAREKLY INHAFENLVAHLNKFFAARWRNGFVDAILVKYVATIVGYLVVSLPVFFID SPIYRLFSSSNVNAETTSASKIAGLYTRNSRLLLQLAAAIGRLVLAGKEV TRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHLAHMMRPGK LVVADEDDPESSIRFESVNIVSPDGTILCEGLSLKMERGCHVLTTGPNGC GKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLAMGSLRENVTYPM TWPEAMAVGATDEKIMQLLERVHLGDVARRRDGLDAVKDWAEVLSGGQKQ RLAFGRLLFHAPQYAILDEASSAVSIDVEKVLYEAVKEAGITVISVSHRP SLWQFHDRVLAFDGSGGYEFRDIGDEDFRNLESGRAGAEEMAAESA* back to topspliced messenger RNA >Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA back to topprotein sequence of Gvermi784.t1 >Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=697bp
MTNAFSVLARQPRAALATAAAVAATTGVLAHKWNAAVHSKRLDSAIYRPQ AHLPPALASASPPPARVDLRFVKTVASFLRVVIRAPPSQEASVLALVAVL LAARSWLDLWASSNGGHVVKAIVARDRRNFVRRAVLDIALMMFPMSFVNN SLRYSIARLKLLMRRRLSLYMHDKYLSNNTFYKLSNLDARIRNVDQLLTV DIDRFCSSLVDLYCNVSKPVFDIFLFSRRLSRSLGPSGPLCMIMYFAACS VILRAIQPPFGQLAAEEQRLEGEYRLHHTRLITHSEEIAFFGGAAREKLY INHAFENLVAHLNKFFAARWRNGFVDAILVKYVATIVGYLVVSLPVFFID SPIYRLFSSSNVNAETTSASKIAGLYTRNSRLLLQLAAAIGRLVLAGKEV TRLTGYTHRVSRLEHVLDELCRAGAVRRRFESSSDLLHDAHLAHMMRPGK LVVADEDDPESSIRFESVNIVSPDGTILCEGLSLKMERGCHVLTTGPNGC GKSSLFRVLAGLWPVYGGTIYRPARSRIFYVPQRPYLAMGSLRENVTYPM TWPEAMAVGATDEKIMQLLERVHLGDVARRRDGLDAVKDWAEVLSGGQKQ RLAFGRLLFHAPQYAILDEASSAVSIDVEKVLYEAVKEAGITVISVSHRP SLWQFHDRVLAFDGSGGYEFRDIGDEDFRNLESGRAGAEEMAAESA* back to topmRNA from alignment at ScGOVlb_2952:248847..250937+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc
taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA
ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA
GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT
CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC
GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG
CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA
CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG
CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT
TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT
CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC
TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG
GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC
CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC
TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT
GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA
GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC
ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC
ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC
CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG
CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC
TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC
GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT
TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC
ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT
CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT
CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA
TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC
GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC
TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC
GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG
CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC
GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG
ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA
GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC
TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA
CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT
TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG
AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG
AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG
GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG
GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA back to topCoding sequence (CDS) from alignment at ScGOVlb_2952:248847..250937+ >Gvermi784.t1 ID=Gvermi784.t1|Name=Gvermi784.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2091bp|location=Sequence derived from alignment at ScGOVlb_2952:248847..250937+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) atgaccaacgctttctccgtcctcgcccgccagccgcgcgccgccctggc taccgccgccgcagtcgctgccaccaccggcgTGCTCGCCCACAAATGGA ACGCCGCTGTGCACAGCAAGCGCCTCGACTCCGCAATATACAGACCGCAA GCGCACCTCCCTCCCGCGCTGGCCTCCGCGTCGCCGCCGCCGGCGCGCGT CGACCTGCGCTTCGTCAAGACAGTCGCCTCATTCTTGCGCGTCGTTATTC GTGCGCCCCCTTCGCAGGAGGCATCTGTTCTGGCGCTCGTCGCCGTGCTG CTGGCCGCCCGCAGCTGGCTCGACCTGTGGGCCAGTTCCAACGGCGGGCA CGTCGTCAAGGCCATCGTCGCCCGAGACCGCCGTAACTTTGTGCGTCGTG CCGTCCTGGATATTGCCCTCATGATGTTCCCCATGTCTTTTGTCAATAAT TCACTGCGCTACTCTATAGCGCGTCTCAAGCTGCTCATGCGCCGTCGTCT CTCGCTCTACATGCACGACAAGTACTTGTCGAACAATACTTTTTACAAGC TGTCTAACCTCGATGCCCGCATTCGCAACGTCGACCAGCTGCTCACTGTG GACATTGACCGCTTCTGCTCCTCTCTTGTTGACTTGTACTGCAACGTCTC CAAGCCTGTGTTTGACATCTTTCTGTTCAGTCGCCGCTTGTCGCGCAGTC TGGGCCCATCCGGGCCGCTCTGCATGATCATGTACTTTGCTGCATGTTCT GTCATTTTAAGAGCCATCCAACCTCCTTTCGGACAGCTCGCGGCTGAGGA GCAGCGGCTGGAGGGCGAGTACCGTCTTCACCACACCCGCCTCATCACGC ATTCTGAAGAAATCGCATTCTTCGGCGGTGCGGCGCGCGAGAAGCTGTAC ATCAACCACGCATTTGAGAATCTCGTCGCCCATCTCAACAAATTTTTCGC CGCACGTTGGCGCAATGGCTTTGTGGACGCCATCCTGGTCAAATACGTCG CCACCATTGTGGGATACCTGGTGGTTTCGCTGCCAGTGTTCTTCATTGAC TCACCCATATACCGTCTCTTCTCGTCATCAAATGTGAATGCAGAGACTAC GTCAGCGTCGAAGATCGCCGGGTTGTATACCAGAAACTCTCGCCTGTTGT TGCAGTTAGCTGCCGCCATCGGAAGATTGGTGCTTGCCGGCAAGGAGGTC ACGCGTCTCACCGGGTATACTCATCGCGTCAGCAGGCTAGAACATGTGCT CGACGAGCTTTGTCGTGCGGGCGCCGTGCGTCGACGCTTCGAATCTTCTT CCGACTTGTTGCATGATGCGCATTTAGCGCATATGATGCGGCCTGGAAAA TTGGTAGTTGCAGACGAAGATGACCCGGAGAGCAGTATTCGATTCGAGTC GGTGAACATCGTGTCACCGGACGGTACGATCTTGTGCGAAGGACTTTCTC TGAAAATGGAGCGTGGATGTCACGTGCTGACGACCGGGCCAAATGGGTGC GGTAAGAGCTCGTTATTCCGCGTATTGGCGGGGTTGTGGCCGGTGTATGG CGGCACGATCTACCGGCCGGCTCGTTCACGTATCTTTTATGTTCCGCAAC GGCCGTATCTGGCGATGGGAAGCTTGCGTGAGAACGTGACGTACCCAATG ACGTGGCCGGAGGCCATGGCTGTGGGGGCGACGGATGAGAAGATCATGCA GTTGTTGGAAAGAGTGCATCTCGGGGACGTTGCTCGACGACGGGACGGCC TGGACGCAGTGAAGGATTGGGCCGAGGTGCTGAGCGGGGGACAGAAGCAA CGGCTGGCGTTTGGCCGGCTTCTGTTTCATGCGCCGCAGTACGCAATTCT TGATGAGGCTTCATCGGCGGTTTCCATCGACGTGGAGAAGGTTTTGTACG AGGCGGTGAAGGAAGCGGGGATTACGGTGATCAGTGTGAGTCACCGCCCG AGCCTTTGGCAGTTTCACGATCGCGTTTTGGCATTCGATGGCAGTGGTGG GTACGAGTTCCGGGATATTGGCGATGAGGATTTTCGCAATTTGGAGAGCG GTAGGGCCGGCGCAGAGGAGATGGCTGCTGAGAGTGCTTAA back to top
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