Gvermi884.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi884.t1
Unique NameGvermi884.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Homology
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A2V3INR3_9FLOR (40S ribosomal protein S23 n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A2V3INR3_9FLOR)

HSP 1 Score: 288 bits (736), Expect = 2.170e-98
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MGNGKPAGMRCARKLRTHRREQKWHNK+YSRKHS+TALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT
Sbjct:    1 MGNGKPAGMRCARKLRTHRREQKWHNKKYSRKHSSTALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145          
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A5J4Z271_PORPP (40S ribosomal protein S23 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z271_PORPP)

HSP 1 Score: 248 bits (632), Expect = 1.570e-82
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG+GKP G+R ARKLR HRREQKW NKRY+R HS T LKANPFGGASHAKGIVLERIGIEAKQPNSAIRKS RVQLIKNGKKIAAFVP DGCLNF+EENDEVLISGFGR GHSVGD+PGVRFK VKV+GV+L+AL++ KKEKPRT
Sbjct:    1 MGSGKPRGIRSARKLRNHRREQKWANKRYARAHSLTGLKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGCLNFIEENDEVLISGFGRKGHSVGDIPGVRFKAVKVSGVALIALWKMKKEKPRT 145          
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A1X6P1Y2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1Y2_PORUM)

HSP 1 Score: 246 bits (628), Expect = 6.390e-82
Identity = 123/145 (84.83%), Postives = 134/145 (92.41%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG+GKPAG+R  RKL+ HRREQ WHNK+Y+RKHSATALKANPF GASHAKGIVLERIGIEAKQPNSAIRKS RVQLIKNGKKIAAFVP DG L++VE+NDEVL+SGFGR+GHSVGDLPGVRFKVVKVA VSLLALF  KKEKPR+
Sbjct:    1 MGSGKPAGLRAGRKLKNHRREQVWHNKKYARKHSATALKANPFAGASHAKGIVLERIGIEAKQPNSAIRKSVRVQLIKNGKKIAAFVPRDGSLSYVEDNDEVLVSGFGRAGHSVGDLPGVRFKVVKVANVSLLALFLEKKEKPRS 145          
BLAST of Gvermi884.t1 vs. uniprot
Match: J7G1C8_9CRYP (60S ribosomal protein S23 n=2 Tax=Cryptophyceae TaxID=3027 RepID=J7G1C8_9CRYP)

HSP 1 Score: 238 bits (606), Expect = 1.440e-78
Identity = 116/144 (80.56%), Postives = 131/144 (90.97%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPR 144
            MG+GKP G++ ARKLR HR++QKW++KRY+ +HS  ALKANP  GASHAKGIV+ERIGIEAKQPNSAIRK  RVQLIKNGKKIAAFVP DGCLNF+EENDEVLISGFGR GHSVGD+PGVRFKVVKVAGVSL++LFR KKEKP+
Sbjct:    1 MGSGKPRGIQAARKLRNHRKKQKWNDKRYTHRHSLAALKANPMKGASHAKGIVVERIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPNDGCLNFIEENDEVLISGFGRKGHSVGDIPGVRFKVVKVAGVSLISLFRRKKEKPK 144          
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A2P2I7D0_9CRUS (40S ribosomal protein S23 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I7D0_9CRUS)

HSP 1 Score: 236 bits (601), Expect = 8.340e-78
Identity = 114/145 (78.62%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG G+P G++ ARKLR HRR+QKW +K + +KH  TALKANPF GASHAKGIV+E+IGIEAKQPNSAIRK CRVQLIKNGKKIAAFVP DGCLNF++ENDEVL+SGFGR+GHSVGD+PGVRFKVVKVAGVSL ALF  KK+KPR+
Sbjct:    1 MGTGQPRGIKAARKLRNHRRKQKWASKHFKKKHLGTALKANPFEGASHAKGIVVEKIGIEAKQPNSAIRKCCRVQLIKNGKKIAAFVPNDGCLNFIDENDEVLVSGFGRAGHSVGDIPGVRFKVVKVAGVSLKALFTEKKDKPRS 145          
BLAST of Gvermi884.t1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 235 bits (600), Expect = 1.180e-77
Identity = 115/145 (79.31%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            MG  KP+G+RCARKLR HRR Q+W  K Y++ HS TA+KANP GG+S AKGIVLE+IGIEAKQPNSAIRKSCRVQLIKN KKIAAFVP DGCLNFV+ENDEVLISGFGR GH+VGD+PGVRFKVVKV+GVSLLAL++ KKEKPR+
Sbjct:    1 MGKHKPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145          
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A7N4V263_SARHA (40S ribosomal protein S23 n=2 Tax=Amniota TaxID=32524 RepID=A0A7N4V263_SARHA)

HSP 1 Score: 234 bits (597), Expect = 5.240e-77
Identity = 111/145 (76.55%), Postives = 130/145 (89.66%), Query Frame = 0
Query:    1 MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            +G GK  G+R ARKLR+HRR+QKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:   14 LGKGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 158          
BLAST of Gvermi884.t1 vs. uniprot
Match: A0A8C6VDN2_NAJNA (40S ribosomal protein S23 n=3 Tax=Elapinae TaxID=42168 RepID=A0A8C6VDN2_NAJNA)

HSP 1 Score: 232 bits (592), Expect = 1.780e-76
Identity = 111/142 (78.17%), Postives = 128/142 (90.14%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR+HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    1 GKCRGLRTARKLRSHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 142          
BLAST of Gvermi884.t1 vs. uniprot
Match: Q5HZT5_XENTR (40S ribosomal protein S23 n=18 Tax=Euteleostomi TaxID=117571 RepID=Q5HZT5_XENTR)

HSP 1 Score: 232 bits (592), Expect = 1.840e-76
Identity = 111/142 (78.17%), Postives = 128/142 (90.14%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR+GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRAGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of Gvermi884.t1 vs. uniprot
Match: A8KB78_DANRE (40S ribosomal protein S23 n=63 Tax=cellular organisms TaxID=131567 RepID=A8KB78_DANRE)

HSP 1 Score: 232 bits (591), Expect = 2.610e-76
Identity = 111/142 (78.17%), Postives = 127/142 (89.44%), Query Frame = 0
Query:    4 GKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAKGIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEENDEVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT 145
            GK  G+R ARKLR HRREQKWH+K+Y + H  TALKANPFGGASHAKGIVLE++G+EAKQPNSAIRK  RVQLIKNGKKI AFVP DGCLNF+EENDEVL++GFGR GH+VGD+PGVRFKVVKVA VSLLAL++ KKE+PR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of Gvermi884.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INR3_9FLOR2.170e-9898.6240S ribosomal protein S23 n=3 Tax=Rhodymeniophycid... [more]
A0A5J4Z271_PORPP1.570e-8284.8340S ribosomal protein S23 n=1 Tax=Porphyridium pur... [more]
A0A1X6P1Y2_PORUM6.390e-8284.83Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
J7G1C8_9CRYP1.440e-7880.5660S ribosomal protein S23 n=2 Tax=Cryptophyceae Ta... [more]
A0A2P2I7D0_9CRUS8.340e-7878.6240S ribosomal protein S23 n=1 Tax=Hirondellea giga... [more]
M4BPE8_HYAAE1.180e-7779.31Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A7N4V263_SARHA5.240e-7776.5540S ribosomal protein S23 n=2 Tax=Amniota TaxID=32... [more]
A0A8C6VDN2_NAJNA1.780e-7678.1740S ribosomal protein S23 n=3 Tax=Elapinae TaxID=4... [more]
Q5HZT5_XENTR1.840e-7678.1740S ribosomal protein S23 n=18 Tax=Euteleostomi Ta... [more]
A8KB78_DANRE2.610e-7678.1740S ribosomal protein S23 n=63 Tax=cellular organi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 9..144
e-value: 3.0E-53
score: 177.2
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 28..142
e-value: 8.72416E-75
score: 216.366
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 18..145
e-value: 4.4E-32
score: 108.2
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 31..144
e-value: 1.8E-49
score: 166.1
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..144
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 62..69
NoneNo IPR availableGENE3D2.40.50.140coord: 27..145
e-value: 8.6E-44
score: 149.8
NoneNo IPR availablePANTHERPTHR11652:SF1440S RIBOSOMAL PROTEIN S23coord: 4..144
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 22..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:895836..896273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1Gvermi884.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2952 895836..896273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005680Ribosomal_S23_euk/arc
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold