Gvermi884.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi884.t1
Unique NameGvermi884.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:895836..896273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_026541-tr
Preferred nameRPS23
PFAMsRibosom_S12_S23
Max annot lvl33208|Metazoa
KEGG koko:K02973
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.19e-80
EggNOG OGsCOG0048@1|root,KOG1749@2759|Eukaryota,39ZWD@33154|Opisthokonta,3BPBM@33208|Metazoa,3CU4X@33213|Bilateria
Descriptionmaintenance of translational fidelity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi884Gvermi884Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 895836..896273 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1.start1Gvermi884.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 895836..895838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1.CDS1Gvermi884.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 895836..896273 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1.exon1Gvermi884.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 895836..896273 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1.stop1Gvermi884.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 896271..896273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi884.t1Gvermi884.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 895836..896273 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
back to top

spliced messenger RNA

>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_2952:895836..896273+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACGGAAAGCCGGCCGGAATGCGCTGCGCGCGCAAGCTGCGCAC
GCACCGCCGCGAGCAAAAGTGGCACAACAAGAGGTACTCGCGCAAGCACT
CGGCCACCGCCCTCAAGGCCAACCCGTTCGGCGGCGCCTCGCACGCCAAG
GGCATCGTGCTGGAGAGAATCGGCATCGAGGCCAAGCAGCCCAACTCGGC
CATCCGCAAGTCGTGCCGCGTCCAGCTCATCAAGAACGGCAAGAAGATCG
CCGCCTTCGTCCCGGGCGACGGCTGCCTCAACTTTGTCGAGGAAAACGAC
GAGGTGCTCATCTCGGGCTTTGGCCGCAGCGGCCACTCCGTCGGCGATCT
GCCCGGTGTGCGCTTCAAGGTTGTCAAGGTTGCCGGCGTGTCGCTGCTCG
CCCTCTTCCGAAACAAGAAGGAAAAGCCCCGCACCTAG
back to top

protein sequence of Gvermi884.t1

>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
back to top

mRNA from alignment at ScGOVlb_2952:895836..896273+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_2952:895836..896273+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAACGGAAAGCCGGCCGGAATGCGCTGCGCGCGCAAGCTGCGCAC
GCACCGCCGCGAGCAAAAGTGGCACAACAAGAGGTACTCGCGCAAGCACT
CGGCCACCGCCCTCAAGGCCAACCCGTTCGGCGGCGCCTCGCACGCCAAG
GGCATCGTGCTGGAGAGAATCGGCATCGAGGCCAAGCAGCCCAACTCGGC
CATCCGCAAGTCGTGCCGCGTCCAGCTCATCAAGAACGGCAAGAAGATCG
CCGCCTTCGTCCCGGGCGACGGCTGCCTCAACTTTGTCGAGGAAAACGAC
GAGGTGCTCATCTCGGGCTTTGGCCGCAGCGGCCACTCCGTCGGCGATCT
GCCCGGTGTGCGCTTCAAGGTTGTCAAGGTTGCCGGCGTGTCGCTGCTCG
CCCTCTTCCGAAACAAGAAGGAAAAGCCCCGCACCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_2952:895836..896273+

>Gvermi884.t1 ID=Gvermi884.t1|Name=Gvermi884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=438bp|location=Sequence derived from alignment at ScGOVlb_2952:895836..896273+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAACGGAAAGCCGGCCGGAATGCGCTGCGCGCGCAAGCTGCGCAC
GCACCGCCGCGAGCAAAAGTGGCACAACAAGAGGTACTCGCGCAAGCACT
CGGCCACCGCCCTCAAGGCCAACCCGTTCGGCGGCGCCTCGCACGCCAAG
GGCATCGTGCTGGAGAGAATCGGCATCGAGGCCAAGCAGCCCAACTCGGC
CATCCGCAAGTCGTGCCGCGTCCAGCTCATCAAGAACGGCAAGAAGATCG
CCGCCTTCGTCCCGGGCGACGGCTGCCTCAACTTTGTCGAGGAAAACGAC
GAGGTGCTCATCTCGGGCTTTGGCCGCAGCGGCCACTCCGTCGGCGATCT
GCCCGGTGTGCGCTTCAAGGTTGTCAAGGTTGCCGGCGTGTCGCTGCTCG
CCCTCTTCCGAAACAAGAAGGAAAAGCCCCGCACCTAG
back to top