Gvermi6994.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6994.t1
Unique NameGvermi6994.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Homology
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A2V3J4K9_9FLOR (DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4K9_9FLOR)

HSP 1 Score: 347 bits (889), Expect = 1.070e-119
Identity = 176/195 (90.26%), Postives = 185/195 (94.87%), Query Frame = 0
Query:   23 MLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCVA 217
            MLSDRGYAVLNT+EDLNLSKEDF A M+TANFNRESLTMLRQRRDNPADQIFVFFPDE RGKSVGVDVVSA+TKRME+N VNN +M+LQTGLTPTAKGAVEKMSASG+CLLEVFMENELLVNIT HQLVP HEL+SE SK ALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYR CV+
Sbjct:    1 MLSDRGYAVLNTTEDLNLSKEDFQAAMQTANFNRESLTMLRQRRDNPADQIFVFFPDEMRGKSVGVDVVSALTKRMESNGVNNGIMVLQTGLTPTAKGAVEKMSASGRCLLEVFMENELLVNITRHQLVPIHELLSEPSKHALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRLCVS 195          
BLAST of Gvermi6994.t1 vs. uniprot
Match: R7QDZ3_CHOCR (RNA polymerase I, II, III common subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDZ3_CHOCR)

HSP 1 Score: 271 bits (693), Expect = 1.580e-89
Identity = 133/216 (61.57%), Postives = 174/216 (80.56%), Query Frame = 0
Query:    1 MNDAQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            M++   E+D+SRL+R+RRT+LEMLSDRGYAVLN+ EDL   +E FA +  T N+NRESLT+LRQ++D+  DQI+VFFP+E + K +GV  +    KRME + V +A+++L+TGLTP AK  V ++++  +  +E+F+ENEL+VNIT H LVPKH+++S + K ALLRRYKLKESQLPRIQ++DPIARYYGL  GNVVKITRPSETAGRYVTYR CV
Sbjct:    1 MDEESTEQDISRLFRIRRTILEMLSDRGYAVLNSEEDLLQPREVFAREFITQNYNRESLTLLRQKKDDDKDQIYVFFPEEIKNKPLGVKPLLERGKRMERDGVRHAIIVLETGLTPYAKKTVAELNSGDQARMEIFIENELIVNITKHILVPKHDVLSADEKKALLRRYKLKESQLPRIQKTDPIARYYGLTHGNVVKITRPSETAGRYVTYRLCV 216          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A7S1ESI1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESI1_9RHOD)

HSP 1 Score: 233 bits (593), Expect = 1.890e-74
Identity = 116/213 (54.46%), Postives = 162/213 (76.06%), Query Frame = 0
Query:    4 AQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            A ++++++R++RVRRTVL++L DRGY VL+T  DL +S E F  +   + F  E+LT+L+ +RDNP+DQI+VFFP + +   +GV  +    +RM+ + +++A+++L +G+TP+AK AV  +S+  +  LE+F++NELLVNIT H LVPKHEL+S   K ALL+ YKLKESQLPRIQ  DP+ARYYGL PG VV+ITRPSETAGRYVTYR  V
Sbjct:    2 ATMDQEITRMFRVRRTVLQLLRDRGYLVLDTDTDLGMSAEQFRERYAQSKFAAEALTILKSKRDNPSDQIYVFFPQDPK---LGVKPIREYCERMQRDGIHHAIIVLLSGMTPSAKEAVHIVSSQHR--LELFLQNELLVNITEHVLVPKHELLSPAEKRALLKMYKLKESQLPRIQMKDPVARYYGLTPGQVVRITRPSETAGRYVTYRLVV 209          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A6T6JZI1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6JZI1_9RHOD)

HSP 1 Score: 229 bits (583), Expect = 6.880e-73
Identity = 117/211 (55.45%), Postives = 156/211 (73.93%), Query Frame = 0
Query:    6 IEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            +++++ RL+RVR+T+ EML DRGY V+  S+DL  + E+F+ +   A F RESLT+L+Q+RD+PADQI+VFF     G  V V  +     RME + V+ A+MI+  GLTP+A  A+ K+    +  +E F+ENELLVNIT H LVPKHE++S   K ALL+RYKLKESQLPR+Q+ DP++RYYGL PG+VV+ITRPSETAGRYVTYR  V
Sbjct:    7 LDQEIRRLFRVRKTLHEMLVDRGYIVV--SDDLKTTLEEFSQRFHDAGFARESLTLLKQKRDDPADQIYVFFSQGTEGPKVSVKSLKDTIARMERDGVHRAIMIMSEGLTPSASDAISKLD---RYRIEPFLENELLVNITRHVLVPKHEMLSTAEKKALLKRYKLKESQLPRVQQRDPVSRYYGLSPGDVVRITRPSETAGRYVTYRLVV 212          
BLAST of Gvermi6994.t1 vs. uniprot
Match: M2XGL8_GALSU (DNA-directed RNA polymerase II subunit E n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XGL8_GALSU)

HSP 1 Score: 228 bits (582), Expect = 9.760e-73
Identity = 115/211 (54.50%), Postives = 161/211 (76.30%), Query Frame = 0
Query:    6 IEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            +E++V++L+R+R+T+LEML DRGY VL TS DL +++E+F ++++ AN++RESLT+L+Q + +P+DQI+VFFP EER   V V  +     RM+   V  A++++   L+P AK  ++K+++  K  +EVF+E ELLVNIT+H+LVPKHE++S E K  LL+RY LKESQLPRI  +DP+ARY GL  G VVKITRPSETAGRYVTYR  V
Sbjct:    7 VEQEVTKLFRIRKTILEMLRDRGYVVLETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQHDPSDQIYVFFPAEER---VSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVASQFK--VEVFLEMELLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQLPRILMTDPVARYLGLQKGQVVKITRPSETAGRYVTYRLVV 212          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A7J7IF98_9RHOD (Dna-directed RNA n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IF98_9RHOD)

HSP 1 Score: 218 bits (556), Expect = 8.320e-69
Identity = 121/214 (56.54%), Postives = 153/214 (71.50%), Query Frame = 0
Query:    3 DAQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            D Q+E +  RL+RVRRT+LEML DRGY VL T  DL L  E+FA +   A   RESLTMLRQ R + ++QI+VFFP EE+   VGV  +     R+E   V  A++++QTGLTP AK AV ++    +  LE+F E ELLVNIT HQLVP+HE+++ E K  LLRRY+LKE+QLPRI +SDP+ARY+G+  G V+KITR SETAGRYVTYR  V
Sbjct:    4 DVQVE-ETRRLHRVRRTILEMLRDRGYLVLPTKTDLELPLEEFAHKFDAAGRARESLTMLRQHRVDRSNQIYVFFPKEEK---VGVKPIREYCMRLETENVLRAIIVVQTGLTPIAKQAVAELQP--RFHLELFQEAELLVNITKHQLVPRHEVLTAEQKKTLLRRYQLKETQLPRILQSDPVARYFGVTRGQVIKITRSSETAGRYVTYRLVV 211          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A1X6NM67_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM67_PORUM)

HSP 1 Score: 216 bits (549), Expect = 9.590e-68
Identity = 112/214 (52.34%), Postives = 152/214 (71.03%), Query Frame = 0
Query:    4 AQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTS-EDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            + +E +V+RLYRVRRTVLEML DRGY + +TS +DL ++  +F      + ++R+SLTM +Q R N  +QI+VFFP   R   +G   V    +R+ N  V  A+++LQ  +TP+A  AV +M  + +  LE+F+ENELL+NIT H LVP+HE++S+  K ALL RYKLK+SQLPR+Q+ D +ARYYGL  G V+KITRPSETAGRY TYR CV
Sbjct:    2 SSVEAEVTRLYRVRRTVLEMLRDRGYVISDTSADDLGMTAAEFENNFTASGYSRDSLTMFKQLRANAGEQIYVFFP---RDVKLGKAAVDEYKRRLTNEGVARAIIVLQGPMTPSANKAVGEMEPAVR--LELFLENELLINITKHVLVPQHEVLSDTEKAALLARYKLKDSQLPRVQKKDAVARYYGLTAGQVMKITRPSETAGRYCTYRLCV 210          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A5J4YSN5_PORPP (DNA-directed RNA polymerases II and IV subunit 5A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSN5_PORPP)

HSP 1 Score: 210 bits (534), Expect = 1.690e-65
Identity = 105/211 (49.76%), Postives = 153/211 (72.51%), Query Frame = 0
Query:    6 IEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            +++++ R++RVRRTVLEML DRGY VL+  +DL +  + F    R +NF  ++L +++ +R +   ++ VFFP +++   VGV +V  + +R+E  ++++ +++L   LTP+AK AV  MS+  +  LE+F +NELLVNIT H LVPKHE+++++ K ALL  YKLKESQLPRIQ  DP+ARYYG+  G VVK+TRPSETAGRYVTYR  V
Sbjct:    4 LQEEIKRMFRVRRTVLEMLRDRGYLVLDNEDDLGMPYQTFYNNFRESNFQDQALEIIKWKRSDVNAKVHVFFPQDQK---VGVKLVREVCERLELESIHHGIIVLLNSLTPSAKDAVSIMSSQYR--LELFAQNELLVNITQHVLVPKHEVLTDDQKRALLEMYKLKESQLPRIQTRDPVARYYGMTVGQVVKVTRPSETAGRYVTYRLVV 209          
BLAST of Gvermi6994.t1 vs. uniprot
Match: V7C3Z8_PHAVU (Uncharacterized protein n=4 Tax=Phaseoleae TaxID=163735 RepID=V7C3Z8_PHAVU)

HSP 1 Score: 206 bits (525), Expect = 3.670e-64
Identity = 108/210 (51.43%), Postives = 149/210 (70.95%), Query Frame = 0
Query:    7 EKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            ++++SRLYR+R+TV+ ML DRGY V +   ++N+SK +F +     N  RE L + + ++DN +DQI+VFFPDE +   VGV  +   T RM N+ V  A+++ QT LTP A+  V ++S+  K  LEVF E ELLVNI  H+LVP+H+++++  K  L+ RY +KE+QLPRIQ +DP+ARYYGL  G VVKI RPSETAGRYVTYRF V
Sbjct:    5 DEEISRLYRIRKTVMHMLRDRGYLVGDF--EINMSKHEFKSSHGGENMKREDLDLNKSKKDNSSDQIYVFFPDEAK---VGVKTMKTYTNRMNNDNVYRAILVTQTNLTPFARTCVSEISS--KFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLIERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 207          
BLAST of Gvermi6994.t1 vs. uniprot
Match: A0A7S3UFC4_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFC4_9CHLO)

HSP 1 Score: 206 bits (524), Expect = 5.730e-64
Identity = 113/217 (52.07%), Postives = 153/217 (70.51%), Query Frame = 0
Query:    4 AQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMRTANFN----RESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMENNAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQLVPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKITRPSETAGRYVTYRFCV 216
            A    D +RL+RVRRTV +ML+DRGY V    ++L++++EDF  Q     F      E LT+L  R+D  ++Q+FVFFP+E +   VGV  +    +RM++  V  A+++ ++ LTP AK  +++M    K ++E+F+E+ELLVNIT H LVPKH+L+SEE K ALL RYK+KESQLPRIQ SDP+ARYYGL  G VV+I RPSETAGRYVTYR C+
Sbjct:    2 ADAPPDPTRLFRVRRTVAQMLNDRGYLV--PQKELDMTREDFV-QPPPEGFGLAPRSEDLTILVPRKDGSSEQMFVFFPEEVK---VGVKTIKTYAERMKSENVGRAILVAKSALTPFAKQCLQEMQP--KYIVELFLESELLVNITQHTLVPKHQLLSEEDKRALLSRYKVKESQLPRIQISDPVARYYGLQRGQVVRIVRPSETAGRYVTYRLCI 210          
The following BLAST results are available for this feature:
BLAST of Gvermi6994.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4K9_9FLOR1.070e-11990.26DNA-directed RNA polymerases I, II, and III subuni... [more]
R7QDZ3_CHOCR1.580e-8961.57RNA polymerase I, II, III common subunit n=1 Tax=C... [more]
A0A7S1ESI1_9RHOD1.890e-7454.46Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6T6JZI1_9RHOD6.880e-7355.45Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2XGL8_GALSU9.760e-7354.50DNA-directed RNA polymerase II subunit E n=1 Tax=G... [more]
A0A7J7IF98_9RHOD8.320e-6956.54Dna-directed RNA n=2 Tax=Cyanidiaceae TaxID=265316... [more]
A0A1X6NM67_PORUM9.590e-6852.34Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YSN5_PORPP1.690e-6549.76DNA-directed RNA polymerases II and IV subunit 5A ... [more]
V7C3Z8_PHAVU3.670e-6451.43Uncharacterized protein n=4 Tax=Phaseoleae TaxID=1... [more]
A0A7S3UFC4_9CHLO5.730e-6452.07Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PIRSFPIRSF000747RPB5coord: 2..216
e-value: 9.6E-76
score: 251.4
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 7..216
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5HAMAPMF_00025RNApol_RpoH_RPB5coord: 143..216
score: 21.704304
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 143..215
e-value: 8.3E-32
score: 108.9
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 5..140
e-value: 1.4E-34
score: 121.1
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 7..144
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 8..98
e-value: 1.2E-21
score: 77.1
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 141..217
e-value: 1.5E-33
score: 116.3
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 141..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:861484..862137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1Gvermi6994.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 861484..862137 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MNDAQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMR
TANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMEN
NAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQL
VPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKIT
RPSETAGRYVTYRFCVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014381Arch_Rpo5/euc_Rpb5
IPR000783RNA_pol_subH/Rpb5_C
IPR036710RNA_pol_Rpb5_N_sf
IPR005571RNA_pol_Rpb5_N
IPR035913RPB5-like_sf