Gvermi6994.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6994.t1
Unique NameGvermi6994.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:861484..862137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705732.1
Preferred nameRPB5
PFAMsRNA_pol_Rpb5_C,RNA_pol_Rpb5_N
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000418,GO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue1.96e-72
EggNOG OGsCOG2012@1|root,KOG3218@2759|Eukaryota
DescriptionDNA-directed 5'-3' RNA polymerase activity
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6994Gvermi6994Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 861484..862137 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1.stop1Gvermi6994.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 861484..861486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1.CDS1Gvermi6994.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 861484..862137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1.exon1Gvermi6994.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 861484..862137 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1.start1Gvermi6994.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 862135..862137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6994.t1Gvermi6994.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 861484..862137 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=218bp
MNDAQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMR
TANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMEN
NAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQL
VPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKIT
RPSETAGRYVTYRFCVA*
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spliced messenger RNA

>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:861484..862137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATGCGCAAATAGAGAAGGACGTCAGTCGACTATATCGTGTGCG
TCGAACAGTTTTGGAAATGCTATCCGACCGGGGATATGCAGTCCTGAATA
CGAGTGAGGATCTGAATTTAAGCAAGGAGGATTTCGCTGCACAAATGCGA
ACTGCAAACTTCAATCGCGAATCTCTGACGATGTTAAGGCAAAGGCGTGA
CAATCCGGCAGACCAGATCTTTGTTTTCTTTCCAGACGAAGAACGAGGCA
AGTCTGTTGGTGTAGATGTTGTTAGTGCCATAACCAAACGTATGGAAAAC
AATGCCGTAAATAATGCGCTCATGATCTTGCAAACTGGACTGACCCCTAC
GGCAAAAGGCGCAGTAGAAAAGATGTCCGCTTCTGGCAAATGTTTACTGG
AGGTGTTCATGGAGAATGAATTGCTAGTGAATATTACTTACCATCAGCTT
GTTCCGAAGCACGAACTGATGTCCGAAGAATCAAAGCTCGCCCTGCTTCG
GAGGTACAAACTAAAAGAAAGTCAGTTGCCTCGTATACAGCGATCCGACC
CTATTGCACGGTATTATGGTCTTGTGCCCGGTAATGTTGTGAAAATTACC
CGACCCTCGGAAACGGCGGGACGGTATGTCACTTATCGTTTCTGTGTTGC
ATAA
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protein sequence of Gvermi6994.t1

>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MNDAQIEKDVSRLYRVRRTVLEMLSDRGYAVLNTSEDLNLSKEDFAAQMR
TANFNRESLTMLRQRRDNPADQIFVFFPDEERGKSVGVDVVSAITKRMEN
NAVNNALMILQTGLTPTAKGAVEKMSASGKCLLEVFMENELLVNITYHQL
VPKHELMSEESKLALLRRYKLKESQLPRIQRSDPIARYYGLVPGNVVKIT
RPSETAGRYVTYRFCVA*
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mRNA from alignment at ScGOVlb_24229:861484..862137-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:861484..862137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGATGCGCAAATAGAGAAGGACGTCAGTCGACTATATCGTGTGCG
TCGAACAGTTTTGGAAATGCTATCCGACCGGGGATATGCAGTCCTGAATA
CGAGTGAGGATCTGAATTTAAGCAAGGAGGATTTCGCTGCACAAATGCGA
ACTGCAAACTTCAATCGCGAATCTCTGACGATGTTAAGGCAAAGGCGTGA
CAATCCGGCAGACCAGATCTTTGTTTTCTTTCCAGACGAAGAACGAGGCA
AGTCTGTTGGTGTAGATGTTGTTAGTGCCATAACCAAACGTATGGAAAAC
AATGCCGTAAATAATGCGCTCATGATCTTGCAAACTGGACTGACCCCTAC
GGCAAAAGGCGCAGTAGAAAAGATGTCCGCTTCTGGCAAATGTTTACTGG
AGGTGTTCATGGAGAATGAATTGCTAGTGAATATTACTTACCATCAGCTT
GTTCCGAAGCACGAACTGATGTCCGAAGAATCAAAGCTCGCCCTGCTTCG
GAGGTACAAACTAAAAGAAAGTCAGTTGCCTCGTATACAGCGATCCGACC
CTATTGCACGGTATTATGGTCTTGTGCCCGGTAATGTTGTGAAAATTACC
CGACCCTCGGAAACGGCGGGACGGTATGTCACTTATCGTTTCTGTGTTGC
ATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:861484..862137-

>Gvermi6994.t1 ID=Gvermi6994.t1|Name=Gvermi6994.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:861484..862137- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGATGCGCAAATAGAGAAGGACGTCAGTCGACTATATCGTGTGCG
TCGAACAGTTTTGGAAATGCTATCCGACCGGGGATATGCAGTCCTGAATA
CGAGTGAGGATCTGAATTTAAGCAAGGAGGATTTCGCTGCACAAATGCGA
ACTGCAAACTTCAATCGCGAATCTCTGACGATGTTAAGGCAAAGGCGTGA
CAATCCGGCAGACCAGATCTTTGTTTTCTTTCCAGACGAAGAACGAGGCA
AGTCTGTTGGTGTAGATGTTGTTAGTGCCATAACCAAACGTATGGAAAAC
AATGCCGTAAATAATGCGCTCATGATCTTGCAAACTGGACTGACCCCTAC
GGCAAAAGGCGCAGTAGAAAAGATGTCCGCTTCTGGCAAATGTTTACTGG
AGGTGTTCATGGAGAATGAATTGCTAGTGAATATTACTTACCATCAGCTT
GTTCCGAAGCACGAACTGATGTCCGAAGAATCAAAGCTCGCCCTGCTTCG
GAGGTACAAACTAAAAGAAAGTCAGTTGCCTCGTATACAGCGATCCGACC
CTATTGCACGGTATTATGGTCTTGTGCCCGGTAATGTTGTGAAAATTACC
CGACCCTCGGAAACGGCGGGACGGTATGTCACTTATCGTTTCTGTGTTGC
ATAA
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