Gvermi6996.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6996.t1
Unique NameGvermi6996.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length174
Homology
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A2V3J4D5_9FLOR (Ribonucloprotein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4D5_9FLOR)

HSP 1 Score: 234 bits (598), Expect = 1.850e-76
Identity = 121/173 (69.94%), Postives = 150/173 (86.71%), Query Frame = 0
Query:    1 MGSEKKRKRKDHDTXXXXXXXXXKSEQVGKDSKPSDEEMVDNEVETYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLREVREEVRSIQNLY 173
            MGSEKKRKRK+H T      XXXKSE++  D KP ++  +  E E Y+SPIA+P+AGRKL+KK+FKL+GAAAT K+LKRGV+EVVLSIRKGD+G+VVLAGDVFPIDVIAHVP+  EESNIPYC+VGRKTELG AGLTNRPTSVV++SEKK++GD+ + L+E+R+EV++IQNLY
Sbjct:    1 MGSEKKRKRKEHGTEEKKHRXXXKSEKIENDEKPPEDVQIYKEPEAYLSPIAKPLAGRKLSKKLFKLIGAAATGKSLKRGVREVVLSIRKGDNGIVVLAGDVFPIDVIAHVPLLSEESNIPYCYVGRKTELGSAGLTNRPTSVVMISEKKSTGDVKDTLQELRKEVQAIQNLY 173          
BLAST of Gvermi6996.t1 vs. uniprot
Match: R7QCR1_CHOCR (Ribonucloprotein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCR1_CHOCR)

HSP 1 Score: 181 bits (460), Expect = 3.130e-55
Identity = 90/131 (68.70%), Postives = 110/131 (83.97%), Query Frame = 0
Query:   43 EVETYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLREVREEVRSIQNLY 173
            EV   VSPIA P+AGRKLTKK+FKL+G AA  KA+ RG+KEVVL+IRK   GVV++AGDVFPI+VIAH+P+ CEE+NIPYCFV RKTELG AGLT RPTSVV+VSEKK+ GD+ + L E++ EV +IQNL+
Sbjct:   61 EVPALVSPIATPMAGRKLTKKLFKLIGHAAKEKAICRGIKEVVLAIRKSQKGVVIMAGDVFPIEVIAHLPVVCEEANIPYCFVSRKTELGAAGLTKRPTSVVMVSEKKSGGDVKQELLEIKGEVAAIQNLF 191          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A167NMK6_PHYB8 (Ribonucloprotein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167NMK6_PHYB8)

HSP 1 Score: 134 bits (338), Expect = 4.000e-37
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 0
Query:   30 KDSKPSDEEM-VDNEVET--YVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLV 146
            K+ K   E+M VD+EVET  YVSPIA P+A +K TKK+FK +  A  AK ++RGVKEV  ++RKG+ G V++AGD+ PIDV+AH+P+ CE+SN+PY FV  K ELG A LT RPTSV +V
Sbjct:    6 KEKKVKQEKMDVDSEVETVRYVSPIAHPLAEKKFTKKIFKTIKKAGKAKHVRRGVKEVGKALRKGEKGFVIIAGDISPIDVVAHMPVLCEDSNVPYVFVSSKEELGEASLTKRPTSVAMV 125          
BLAST of Gvermi6996.t1 vs. uniprot
Match: B8AI40_ORYSI (Ribonucloprotein n=8 Tax=Oryzeae TaxID=147380 RepID=B8AI40_ORYSI)

HSP 1 Score: 133 bits (335), Expect = 7.740e-37
Identity = 68/127 (53.54%), Postives = 91/127 (71.65%), Query Frame = 0
Query:   35 SDEEMVDNEVETYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLRE 161
            SD E+   +  T ++PIA+P+AG+KL K+  KL+  A+ AK LKRGVKEVV SIR+G+ G+ V+AG++ PIDVI HVPI CEE+NIPY +V  K +L  AG T RPT  VLV  K A G++ E ++E
Sbjct:    3 SDTEVEKKKAPTALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKE 129          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A507CNN1_9FUNG (Ribonucloprotein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CNN1_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 9.270e-37
Identity = 65/122 (53.28%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   48 VSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLREVREEVRSI 169
            +SPIA P+AG+KLTKKV++ +  AA  K+++RGVKEVV ++RKG  GVVV+AGD+ PIDVI H+PI CEE+N+PYC+V  K +LG+AG+T RPTS V++  K    D+     E+  EV+ +
Sbjct:   66 LSPIAHPLAGKKLTKKVYRAVRKAAKVKSVRRGVKEVVKALRKGQKGVVVIAGDISPIDVITHIPILCEENNVPYCYVPSKEDLGYAGVTKRPTSCVMIQVKD---DIKALYEEINGEVKDM 184          
BLAST of Gvermi6996.t1 vs. uniprot
Match: F2E1A0_HORVV (Ribonucloprotein n=8 Tax=Triticeae TaxID=147389 RepID=F2E1A0_HORVV)

HSP 1 Score: 133 bits (334), Expect = 1.100e-36
Identity = 67/127 (52.76%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   35 SDEEMVDNEVETYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLRE 161
            SD E    +    ++PIA+P+AG+KL+KK  KL+  A+ AK LKRGVKEVV SIR+G  G+ V+AG++ PIDVI H+PI CEE+N+PY +V  K EL  AG T RPT  VLV  K A G++ E ++E
Sbjct:    3 SDTETEKKKTPVALAPIAKPLAGKKLSKKTLKLVRRASEAKCLKRGVKEVVKSIRRGSKGLCVIAGNISPIDVITHLPILCEEANVPYIYVTSKEELATAGTTKRPTCCVLVMTKPAKGEITEEVKE 129          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A833VAV9_9POAL (Ribonucloprotein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VAV9_9POAL)

HSP 1 Score: 132 bits (333), Expect = 1.750e-36
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 0
Query:   50 PIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLRE 161
            PIA+P+AG+KL K+ FKL+  AA AK L+RGVKEVV SIR+G+ G+ V+AG++ PIDVI H+PI CEES IPY +V  K +L +AG T RPT  VLVS K A G+L E ++E
Sbjct:   22 PIAKPLAGKKLCKRTFKLVRRAAEAKCLRRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHLPILCEESGIPYIYVPTKEDLANAGATKRPTCCVLVSTKPAKGELEEEVKE 133          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A0D3GF92_9ORYZ (Ribonucloprotein n=9 Tax=Poaceae TaxID=4479 RepID=A0A0D3GF92_9ORYZ)

HSP 1 Score: 131 bits (330), Expect = 4.410e-36
Identity = 67/127 (52.76%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   35 SDEEMVDNEVETYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLRE 161
            SD E    +    ++PIA+P+AG+KL K+  KL+  A+ AK LKRGVKEVV SIR+G  G+ ++AG++ PIDVI HVPI CEE+NIPY +V  K +L  AG+T RPT  VLV  K A G+L E ++E
Sbjct:    3 SDTESEKKKTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGITKRPTCCVLVLTKPAKGELEEDVKE 129          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A6G1F6H2_9ORYZ (Ribonucloprotein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1F6H2_9ORYZ)

HSP 1 Score: 131 bits (329), Expect = 7.040e-36
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 0
Query:   46 TYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLRE 161
            T ++PIA+P+AGRKL K+  KL+  A+ AK LKRGVKEVV SIR+G+ G+ V+AG++ PIDVI HVPI CEE+NIPY +V  K +L  AG T RPT  VLV  K A G++ E ++E
Sbjct:   18 TALAPIAKPLAGRKLCKRTLKLVRRASEAKFLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKE 133          
BLAST of Gvermi6996.t1 vs. uniprot
Match: A0A6T6QEL3_9RHOD (Ribonucloprotein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6QEL3_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 7.860e-36
Identity = 60/125 (48.00%), Postives = 91/125 (72.80%), Query Frame = 0
Query:   46 TYVSPIARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAGDVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKKASGDLVEHLREVREEVRSIQ 170
            +++SPIA P+AG ++  +VF+L+  AA  K ++RG++EV  +IRKG  G+ + AGDVFP+DVIAH+P+ CEE++IPYCFV  K  LG+A LT RPTSV+LV+E  A  +  +  +  R+ ++ +Q
Sbjct:   20 SHLSPIAVPLAGVEVVSEVFELIKKAAKGKLIRRGIREVAKAIRKGQKGICIFAGDVFPVDVIAHLPLTCEEASIPYCFVPYKESLGNAALTKRPTSVLLVTEAAAKTEYADEYKSCRKSIKELQ 144          
The following BLAST results are available for this feature:
BLAST of Gvermi6996.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4D5_9FLOR1.850e-7669.94Ribonucloprotein n=1 Tax=Gracilariopsis chorda Tax... [more]
R7QCR1_CHOCR3.130e-5568.70Ribonucloprotein n=1 Tax=Chondrus crispus TaxID=27... [more]
A0A167NMK6_PHYB84.000e-3757.50Ribonucloprotein n=1 Tax=Phycomyces blakesleeanus ... [more]
B8AI40_ORYSI7.740e-3753.54Ribonucloprotein n=8 Tax=Oryzeae TaxID=147380 RepI... [more]
A0A507CNN1_9FUNG9.270e-3753.28Ribonucloprotein n=1 Tax=Synchytrium endobioticum ... [more]
F2E1A0_HORVV1.100e-3652.76Ribonucloprotein n=8 Tax=Triticeae TaxID=147389 Re... [more]
A0A833VAV9_9POAL1.750e-3658.93Ribonucloprotein n=1 Tax=Carex littledalei TaxID=5... [more]
A0A0D3GF92_9ORYZ4.410e-3652.76Ribonucloprotein n=9 Tax=Poaceae TaxID=4479 RepID=... [more]
A0A6G1F6H2_9ORYZ7.040e-3656.90Ribonucloprotein n=1 Tax=Oryza meyeriana var. gran... [more]
A0A6T6QEL3_9RHOD7.860e-3648.00Ribonucloprotein n=1 Tax=Rhodosorus marinus TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 96..109
score: 43.83
coord: 112..122
score: 45.04
coord: 77..91
score: 30.3
coord: 122..136
score: 39.39
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 50..63
score: 48.57
coord: 124..136
score: 44.62
coord: 80..90
score: 29.09
coord: 63..78
score: 31.25
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 63..155
e-value: 3.0E-20
score: 71.7
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 44..170
e-value: 1.1E-40
score: 140.2
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 47..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..40
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 46..160
NoneNo IPR availablePANTHERPTHR23105:SF146SUBFAMILY NOT NAMEDcoord: 46..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:875287..875883 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1Gvermi6996.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 875287..875883 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=174bp
MGSEKKRKRKDHDTEEKKKRKHKKSEQVGKDSKPSDEEMVDNEVETYVSP
IARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAG
DVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKK
ASGDLVEHLREVREEVRSIQNLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like