Gvermi6996.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6996.t1
Unique NameGvermi6996.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:875287..875883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40148.OGLUM02G31750.1
PFAMsRibosomal_L7Ae
Max annot lvl35493|Streptophyta
KEGG koko:K11129
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000469,GO:0000470,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016073,GO:0019538,GO:0022613,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034660,GO:0040031,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904
Evalue1.54e-36
EggNOG OGsCOG1358@1|root,KOG3167@2759|Eukaryota,37TXB@33090|Viridiplantae,3GI3T@35493|Streptophyta,3KZ9E@4447|Liliopsida,3IH97@38820|Poales
DescriptionRibosomal protein L7Ae/L30e/S12e/Gadd45 family
COG categoryA
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6996Gvermi6996Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 875287..875883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1Gvermi6996.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 875287..875883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1.start1Gvermi6996.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 875287..875289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1.CDS1Gvermi6996.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 875287..875446 +
Gvermi6996.t1.CDS2Gvermi6996.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 875522..875883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1.exon1Gvermi6996.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 875287..875446 +
Gvermi6996.t1.exon2Gvermi6996.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 875522..875883 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1.intron1Gvermi6996.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 875447..875521 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6996.t1.stop1Gvermi6996.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 875881..875883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=174bp
MGSEKKRKRKDHDTEEKKKRKHKKSEQVGKDSKPSDEEMVDNEVETYVSP
IARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAG
DVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKK
ASGDLVEHLREVREEVRSIQNLY*
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spliced messenger RNA

>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_24229:875287..875883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCgagaagaaaagaaagagaaaagatcacgatacagaagagaa
gaagaagagaaagcataagaaaTCGGAACAAGTCGGAAAAGATTCAAAAC
CGTCCGACGAAGAAATGGTGGACAATGAAGTCGAAACATATGTTTCCCCA
ATCGCAAGACCTATTGCTGGACGAAAGCTCACAAAAAAAGTTTTTAAACT
ACTCGGAGCTGCGGCTACGGCAAAAGCGTTGAAGCGAGGAGTGAAAGAGG
TTGTTCTAAGTATCAGAAAAGGTGATTCTGGCGTGGTTGTACTCGCTGGC
GATGTGTTTCCCATTGACGTTATAGCGCACGTTCCTATCTTTTGCGAGGA
GAGCAATATCCCGTACTGCTTCGTTGGTCGTAAAACGGAGCTTGGTCATG
CAGGACTCACCAACAGACCGACAAGCGTCGTCTTGGTATCGGAAAAGAAG
GCTTCAGGCGATCTTGTAGAGCACTTAAGAGAGGTGAGAGAAGAGGTCCG
AAGTATTCAAAATCTGTACTAA
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protein sequence of Gvermi6996.t1

>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=174bp
MGSEKKRKRKDHDTEEKKKRKHKKSEQVGKDSKPSDEEMVDNEVETYVSP
IARPIAGRKLTKKVFKLLGAAATAKALKRGVKEVVLSIRKGDSGVVVLAG
DVFPIDVIAHVPIFCEESNIPYCFVGRKTELGHAGLTNRPTSVVLVSEKK
ASGDLVEHLREVREEVRSIQNLY*
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mRNA from alignment at ScGOVlb_24229:875287..875883+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_24229:875287..875883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCCgagaagaaaagaaagagaaaagatcacgatacagaagagaa
gaagaagagaaagcataagaaaTCGGAACAAGTCGGAAAAGATTCAAAAC
CGTCCGACGAAGAAATGGTGGACAATGAAGTCGAAACATATGTTTCCCCA
ATCGCAAGACGTAAGTTCGAAGTCATTCAAAGCTTTGATTTTATTTGTAC
GACTTCTGACTCATACCTCGTTTCTTATTCCATAGCTATTGCTGGACGAA
AGCTCACAAAAAAAGTTTTTAAACTACTCGGAGCTGCGGCTACGGCAAAA
GCGTTGAAGCGAGGAGTGAAAGAGGTTGTTCTAAGTATCAGAAAAGGTGA
TTCTGGCGTGGTTGTACTCGCTGGCGATGTGTTTCCCATTGACGTTATAG
CGCACGTTCCTATCTTTTGCGAGGAGAGCAATATCCCGTACTGCTTCGTT
GGTCGTAAAACGGAGCTTGGTCATGCAGGACTCACCAACAGACCGACAAG
CGTCGTCTTGGTATCGGAAAAGAAGGCTTCAGGCGATCTTGTAGAGCACT
TAAGAGAGGTGAGAGAAGAGGTCCGAAGTATTCAAAATCTGTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:875287..875883+

>Gvermi6996.t1 ID=Gvermi6996.t1|Name=Gvermi6996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=522bp|location=Sequence derived from alignment at ScGOVlb_24229:875287..875883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTCCgagaagaaaagaaagagaaaagatcacgatacagaagagaa
gaagaagagaaagcataagaaaTCGGAACAAGTCGGAAAAGATTCAAAAC
CGTCCGACGAAGAAATGGTGGACAATGAAGTCGAAACATATGTTTCCCCA
ATCGCAAGACCTATTGCTGGACGAAAGCTCACAAAAAAAGTTTTTAAACT
ACTCGGAGCTGCGGCTACGGCAAAAGCGTTGAAGCGAGGAGTGAAAGAGG
TTGTTCTAAGTATCAGAAAAGGTGATTCTGGCGTGGTTGTACTCGCTGGC
GATGTGTTTCCCATTGACGTTATAGCGCACGTTCCTATCTTTTGCGAGGA
GAGCAATATCCCGTACTGCTTCGTTGGTCGTAAAACGGAGCTTGGTCATG
CAGGACTCACCAACAGACCGACAAGCGTCGTCTTGGTATCGGAAAAGAAG
GCTTCAGGCGATCTTGTAGAGCACTTAAGAGAGGTGAGAGAAGAGGTCCG
AAGTATTCAAAATCTGTACTAA
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