Gvermi6937.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6937.t1
Unique Name	Gvermi6937.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:694002..695696 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	106582.XP_004575706.1
Preferred name	POLI
PFAMs	IMS,IMS_C,IMS_HHH
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03510
KEGG Pathway	ko03460,map03460
GOs	GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
Evalue	1.34e-50
EggNOG OGs	COG0389@1\|root,KOG2095@2759\|Eukaryota,38CM1@33154\|Opisthokonta,3BCX5@33208\|Metazoa,3CV7D@33213\|Bilateria,48CIW@7711\|Chordata,4917S@7742\|Vertebrata,4A17J@7898\|Actinopterygii
EC	2.7.7.7
Description	Polymerase (DNA directed) iota
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6937	Gvermi6937	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 694002..695696 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6937.t1.stop1	Gvermi6937.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 694002..694004 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6937.t1.CDS1	Gvermi6937.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 694002..695696 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6937.t1.exon1	Gvermi6937.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 694002..695696 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6937.t1.start1	Gvermi6937.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 695694..695696 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6937.t1	Gvermi6937.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 694002..695696 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:694002..695696-
coding sequence from alignment at ScGOVlb_24229:694002..695696-

mRNA sequence

>Gvermi6937.t1 ID=Gvermi6937.t1|Name=Gvermi6937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=565bp
MRPGKKRLRSASTRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYVARSRAKGAVQKMTPVSKALQMCPELVCIDGSDLTPFREASLEVMT
AIRAWLVERAEQVSAALQAEAPTCACQRLGFDEVFIDVTNLTEAQIERGG
APFLFKGHVFGMTEDDEVRRILMVASQIAHDLRDHVTQRTELTICAGVSN
SKQLAKLAVNMNKPNDQTTFLPGNAEEYIATLSPRALMGFGHSTHEKIIA
WAKQHAKQTAVETVGDVLVLFGSGRCGLNKLADIIGNENQARRILDVSRG
IDTTEVVDCGNAPKSMSAEDSCQSCNNMQDVNRRLTVQVSRLVSRLRSDG
LLFSRRPKTLTVSYRFRGDGFVATSRSVPMPMEIVSVCRSQDVNAVPKAI
EAVRRVALAVLDHHARVCAKNEFDLTLLSVGASNFTSTKAENGNGITEDI
SKFFCKPKKSWASTHRRQSHIHPADGCSPEVSPLICPSSRREVQKGKAGH
NSDLFGVAICPICSKQISGDNLRQNNHIDHCLKAANSDFSSSRSTRDGKK
SKTRTVDSYFAKRP*

spliced messenger RNA

>Gvermi6937.t1 ID=Gvermi6937.t1|Name=Gvermi6937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_24229:694002..695696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCAGGGAAGAAGCGACTGCGCTCTGCATCCACCCGAGCGATAAT
TGCCCTCGACTTGGATTGCTTTTACGCATCTGTCGCCATCCGAGCCCGTC
CTCACTTGAAGGACAAACCGGTCGTGATTGTTCAGAAGCATTTGTGTGTC
ACGAGCAACTATGTAGCTCGAAGTCGCGCCAAAGGTGCGGTTCAGAAGAT
GACGCCAGTCTCTAAGGCCTTACAAATGTGTCCCGAATTGGTGTGTATTG
ATGGGTCTGACTTGACACCTTTTCGAGAAGCCAGTCTGGAGGTCATGACC
GCAATACGCGCGTGGCTTGTTGAAAGGGCAGAGCAGGTATCCGCTGCTCT
GCAAGCAGAAGCTCCGACTTGCGCATGTCAAAGATTGGGATTTGATGAGG
TTTTCATCGACGTCACCAATTTAACGGAGGCACAAATTGAGAGGGGAGGA
GCTCCCTTTCTCTTCAAGGGCCATGTGTTTGGAATGACTGAAGATGATGA
AGTTAGACGTATCCTGATGGTGGCATCACAAATTGCGCACGATCTTAGAG
ACCATGTAACGCAAAGAACCGAATTGACCATTTGTGCCGGTGTCAGTAAC
TCCAAGCAGCTGGCTAAACTTGCTGTGAATATGAATAAGCCCAACGATCA
AACAACGTTCTTGCCGGGGAATGCTGAGGAATATATTGCCACCCTATCAC
CGCGAGCGCTCATGGGTTTCGGACACAGCACTCACGAGAAGATTATCGCG
TGGGCCAAACAACATGCCAAGCAAACGGCTGTTGAAACTGTTGGGGATGT
TTTGGTCTTGTTTGGGAGTGGACGTTGCGGCTTGAACAAACTTGCGGATA
TAATTGGGAACGAGAACCAAGCTCGGCGTATTCTTGATGTCTCTCGTGGT
ATTGATACCACGGAAGTGGTGGATTGTGGAAATGCACCGAAATCGATGTC
TGCTGAAGATTCTTGCCAGAGCTGCAACAACATGCAGGACGTGAATCGGC
GTCTCACTGTTCAAGTTAGTCGATTGGTTTCTCGTCTGCGAAGTGATGGA
TTGTTGTTTTCAAGACGACCAAAGACATTGACAGTGTCGTACAGATTTCG
CGGGGATGGGTTTGTCGCGACTTCTCGCTCTGTGCCCATGCCAATGGAAA
TCGTCTCCGTTTGTCGTTCGCAAGATGTCAACGCAGTACCAAAGGCAATA
GAGGCGGTACGCAGAGTCGCATTGGCCGTCCTTGACCATCACGCTAGGGT
ATGCGCTAAGAACGAGTTTGATCTAACCTTGCTATCTGTCGGTGCCAGCA
ACTTTACAAGCACAAAAGCCGAAAATGGAAATGGAATAACTGAAGATATA
TCTAAGTTCTTCTGTAAACCTAAGAAAAGCTGGGCCTCTACGCACCGCAG
ACAGAGTCATATTCATCCCGCTGACGGCTGTTCTCCGGAAGTGTCGCCGC
TTATATGCCCGAGTTCTCGACGAGAAGTCCAGAAAGGAAAGGCAGGTCAC
AACAGCGATCTGTTCGGTGTTGCGATATGTCCCATCTGCAGCAAACAAAT
ATCCGGGGATAACCTGAGGCAAAACAATCATATCGACCACTGCCTCAAGG
CTGCAAATTCCGACTTTAGCAGCAGTAGGTCAACGAGAGATGGAAAGAAG
TCCAAAACAAGAACAGTAGACTCATATTTTGCAAAGCGCCCATAA

protein sequence of Gvermi6937.t1

>Gvermi6937.t1 ID=Gvermi6937.t1|Name=Gvermi6937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=565bp
MRPGKKRLRSASTRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYVARSRAKGAVQKMTPVSKALQMCPELVCIDGSDLTPFREASLEVMT
AIRAWLVERAEQVSAALQAEAPTCACQRLGFDEVFIDVTNLTEAQIERGG
APFLFKGHVFGMTEDDEVRRILMVASQIAHDLRDHVTQRTELTICAGVSN
SKQLAKLAVNMNKPNDQTTFLPGNAEEYIATLSPRALMGFGHSTHEKIIA
WAKQHAKQTAVETVGDVLVLFGSGRCGLNKLADIIGNENQARRILDVSRG
IDTTEVVDCGNAPKSMSAEDSCQSCNNMQDVNRRLTVQVSRLVSRLRSDG
LLFSRRPKTLTVSYRFRGDGFVATSRSVPMPMEIVSVCRSQDVNAVPKAI
EAVRRVALAVLDHHARVCAKNEFDLTLLSVGASNFTSTKAENGNGITEDI
SKFFCKPKKSWASTHRRQSHIHPADGCSPEVSPLICPSSRREVQKGKAGH
NSDLFGVAICPICSKQISGDNLRQNNHIDHCLKAANSDFSSSRSTRDGKK
SKTRTVDSYFAKRP*

mRNA from alignment at ScGOVlb_24229:694002..695696-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6937.t1 ID=Gvermi6937.t1|Name=Gvermi6937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_24229:694002..695696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGCCAGGGAAGAAGCGACTGCGCTCTGCATCCACCCGAGCGATAAT
TGCCCTCGACTTGGATTGCTTTTACGCATCTGTCGCCATCCGAGCCCGTC
CTCACTTGAAGGACAAACCGGTCGTGATTGTTCAGAAGCATTTGTGTGTC
ACGAGCAACTATGTAGCTCGAAGTCGCGCCAAAGGTGCGGTTCAGAAGAT
GACGCCAGTCTCTAAGGCCTTACAAATGTGTCCCGAATTGGTGTGTATTG
ATGGGTCTGACTTGACACCTTTTCGAGAAGCCAGTCTGGAGGTCATGACC
GCAATACGCGCGTGGCTTGTTGAAAGGGCAGAGCAGGTATCCGCTGCTCT
GCAAGCAGAAGCTCCGACTTGCGCATGTCAAAGATTGGGATTTGATGAGG
TTTTCATCGACGTCACCAATTTAACGGAGGCACAAATTGAGAGGGGAGGA
GCTCCCTTTCTCTTCAAGGGCCATGTGTTTGGAATGACTGAAGATGATGA
AGTTAGACGTATCCTGATGGTGGCATCACAAATTGCGCACGATCTTAGAG
ACCATGTAACGCAAAGAACCGAATTGACCATTTGTGCCGGTGTCAGTAAC
TCCAAGCAGCTGGCTAAACTTGCTGTGAATATGAATAAGCCCAACGATCA
AACAACGTTCTTGCCGGGGAATGCTGAGGAATATATTGCCACCCTATCAC
CGCGAGCGCTCATGGGTTTCGGACACAGCACTCACGAGAAGATTATCGCG
TGGGCCAAACAACATGCCAAGCAAACGGCTGTTGAAACTGTTGGGGATGT
TTTGGTCTTGTTTGGGAGTGGACGTTGCGGCTTGAACAAACTTGCGGATA
TAATTGGGAACGAGAACCAAGCTCGGCGTATTCTTGATGTCTCTCGTGGT
ATTGATACCACGGAAGTGGTGGATTGTGGAAATGCACCGAAATCGATGTC
TGCTGAAGATTCTTGCCAGAGCTGCAACAACATGCAGGACGTGAATCGGC
GTCTCACTGTTCAAGTTAGTCGATTGGTTTCTCGTCTGCGAAGTGATGGA
TTGTTGTTTTCAAGACGACCAAAGACATTGACAGTGTCGTACAGATTTCG
CGGGGATGGGTTTGTCGCGACTTCTCGCTCTGTGCCCATGCCAATGGAAA
TCGTCTCCGTTTGTCGTTCGCAAGATGTCAACGCAGTACCAAAGGCAATA
GAGGCGGTACGCAGAGTCGCATTGGCCGTCCTTGACCATCACGCTAGGGT
ATGCGCTAAGAACGAGTTTGATCTAACCTTGCTATCTGTCGGTGCCAGCA
ACTTTACAAGCACAAAAGCCGAAAATGGAAATGGAATAACTGAAGATATA
TCTAAGTTCTTCTGTAAACCTAAGAAAAGCTGGGCCTCTACGCACCGCAG
ACAGAGTCATATTCATCCCGCTGACGGCTGTTCTCCGGAAGTGTCGCCGC
TTATATGCCCGAGTTCTCGACGAGAAGTCCAGAAAGGAAAGGCAGGTCAC
AACAGCGATCTGTTCGGTGTTGCGATATGTCCCATCTGCAGCAAACAAAT
ATCCGGGGATAACCTGAGGCAAAACAATCATATCGACCACTGCCTCAAGG
CTGCAAATTCCGACTTTAGCAGCAGTAGGTCAACGAGAGATGGAAAGAAG
TCCAAAACAAGAACAGTAGACTCATATTTTGCAAAGCGCCCATAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:694002..695696-

>Gvermi6937.t1 ID=Gvermi6937.t1|Name=Gvermi6937.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1695bp|location=Sequence derived from alignment at ScGOVlb_24229:694002..695696- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGCCAGGGAAGAAGCGACTGCGCTCTGCATCCACCCGAGCGATAAT
TGCCCTCGACTTGGATTGCTTTTACGCATCTGTCGCCATCCGAGCCCGTC
CTCACTTGAAGGACAAACCGGTCGTGATTGTTCAGAAGCATTTGTGTGTC
ACGAGCAACTATGTAGCTCGAAGTCGCGCCAAAGGTGCGGTTCAGAAGAT
GACGCCAGTCTCTAAGGCCTTACAAATGTGTCCCGAATTGGTGTGTATTG
ATGGGTCTGACTTGACACCTTTTCGAGAAGCCAGTCTGGAGGTCATGACC
GCAATACGCGCGTGGCTTGTTGAAAGGGCAGAGCAGGTATCCGCTGCTCT
GCAAGCAGAAGCTCCGACTTGCGCATGTCAAAGATTGGGATTTGATGAGG
TTTTCATCGACGTCACCAATTTAACGGAGGCACAAATTGAGAGGGGAGGA
GCTCCCTTTCTCTTCAAGGGCCATGTGTTTGGAATGACTGAAGATGATGA
AGTTAGACGTATCCTGATGGTGGCATCACAAATTGCGCACGATCTTAGAG
ACCATGTAACGCAAAGAACCGAATTGACCATTTGTGCCGGTGTCAGTAAC
TCCAAGCAGCTGGCTAAACTTGCTGTGAATATGAATAAGCCCAACGATCA
AACAACGTTCTTGCCGGGGAATGCTGAGGAATATATTGCCACCCTATCAC
CGCGAGCGCTCATGGGTTTCGGACACAGCACTCACGAGAAGATTATCGCG
TGGGCCAAACAACATGCCAAGCAAACGGCTGTTGAAACTGTTGGGGATGT
TTTGGTCTTGTTTGGGAGTGGACGTTGCGGCTTGAACAAACTTGCGGATA
TAATTGGGAACGAGAACCAAGCTCGGCGTATTCTTGATGTCTCTCGTGGT
ATTGATACCACGGAAGTGGTGGATTGTGGAAATGCACCGAAATCGATGTC
TGCTGAAGATTCTTGCCAGAGCTGCAACAACATGCAGGACGTGAATCGGC
GTCTCACTGTTCAAGTTAGTCGATTGGTTTCTCGTCTGCGAAGTGATGGA
TTGTTGTTTTCAAGACGACCAAAGACATTGACAGTGTCGTACAGATTTCG
CGGGGATGGGTTTGTCGCGACTTCTCGCTCTGTGCCCATGCCAATGGAAA
TCGTCTCCGTTTGTCGTTCGCAAGATGTCAACGCAGTACCAAAGGCAATA
GAGGCGGTACGCAGAGTCGCATTGGCCGTCCTTGACCATCACGCTAGGGT
ATGCGCTAAGAACGAGTTTGATCTAACCTTGCTATCTGTCGGTGCCAGCA
ACTTTACAAGCACAAAAGCCGAAAATGGAAATGGAATAACTGAAGATATA
TCTAAGTTCTTCTGTAAACCTAAGAAAAGCTGGGCCTCTACGCACCGCAG
ACAGAGTCATATTCATCCCGCTGACGGCTGTTCTCCGGAAGTGTCGCCGC
TTATATGCCCGAGTTCTCGACGAGAAGTCCAGAAAGGAAAGGCAGGTCAC
AACAGCGATCTGTTCGGTGTTGCGATATGTCCCATCTGCAGCAAACAAAT
ATCCGGGGATAACCTGAGGCAAAACAATCATATCGACCACTGCCTCAAGG
CTGCAAATTCCGACTTTAGCAGCAGTAGGTCAACGAGAGATGGAAAGAAG
TCCAAAACAAGAACAGTAGACTCATATTTTGCAAAGCGCCCATAA