Gvermi4400.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4400.t1
Unique NameGvermi4400.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Homology
BLAST of Gvermi4400.t1 vs. uniprot
Match: A0A2V3J1W5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W5_9FLOR)

HSP 1 Score: 187 bits (475), Expect = 6.230e-59
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0
Query:    1 MTSRVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSLLDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELVRKYESTFRQLKTRLTGHIYD 120
            MTSRVDQIALHVRKLAQATGVKA  DD   +P LDGVTSDLDIEALAKSLLDVSKDLDL+LQTLLDPP LPIA+LKSDIAKLQQE+KEKDEL +K LELVRK ESTFRQLK R  GHIY+
Sbjct:    1 MTSRVDQIALHVRKLAQATGVKAHKDDNGKQPFLDGVTSDLDIEALAKSLLDVSKDLDLYLQTLLDPPDLPIASLKSDIAKLQQEMKEKDELLEKCLELVRKTESTFRQLKNRHMGHIYN 120          
BLAST of Gvermi4400.t1 vs. uniprot
Match: R7QPE5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPE5_CHOCR)

HSP 1 Score: 129 bits (323), Expect = 8.930e-36
Identity = 65/119 (54.62%), Postives = 95/119 (79.83%), Query Frame = 0
Query:    1 MTSRVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSLLDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELVRKYESTFRQLKTRLTGHIY 119
            M +RV++IAL V+KLAQATG++   +    +  LDGVTSDLDIEAL+K L+D++KD D++LQ+LLDPP++P A LK+DIA L++EL+EKDEL +K++E+++K E++ R+LK R    IY
Sbjct:    1 MANRVERIALQVQKLAQATGIEDEKEYHGKDSGLDGVTSDLDIEALSKGLIDITKDFDVYLQSLLDPPNMPTANLKADIAALERELQEKDELIEKNVEMLKKAETSLRKLKRRQYRQIY 119          
BLAST of Gvermi4400.t1 vs. uniprot
Match: A0A1X6NR01_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NR01_PORUM)

HSP 1 Score: 64.3 bits (155), Expect = 3.280e-10
Identity = 38/120 (31.67%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    4 RVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSLLDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELVRKYESTFRQLKTRLTGHIYDSVF 123
            R++Q    + +L +A GV    DD      +DGVTSD+D+EAL KS LD +++ D FL +L+        +L+ +I +L+Q+LK+K +L +++  L+R ++ +       ++ H +  +F
Sbjct:    3 RLEQYTRSIGRLLRAAGVS---DDSPPADDVDGVTSDVDVEALMKSTLDATREFDAFLVSLVHEAPPEAISLRQEIDRLEQDLKDKAQLVEQTRALLRDHQKSL----VNVSAHAHQVIF 115          
The following BLAST results are available for this feature:
BLAST of Gvermi4400.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J1W5_9FLOR6.230e-5984.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QPE5_CHOCR8.930e-3654.62Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NR01_PORUM3.280e-1031.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..99
NoneNo IPR availablePFAMPF11594Med28coord: 40..107
e-value: 9.7E-8
score: 32.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1538574..1539595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1Gvermi4400.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1538574..1539595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MTSRVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSL
LDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELV
RKYESTFRQLKTRLTGHIYDSVFHARSHFPTCRETHRAARLPSPPC*
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