Gvermi4400.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4400.t1
Unique NameGvermi4400.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1538574..1539595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4400Gvermi4400Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1538574..1539595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1Gvermi4400.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1538574..1539595 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1.start1Gvermi4400.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1538574..1538576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1.CDS1Gvermi4400.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1538574..1538804 +
Gvermi4400.t1.CDS2Gvermi4400.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1538905..1539031 +
Gvermi4400.t1.CDS3Gvermi4400.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1539392..1539418 +
Gvermi4400.t1.CDS4Gvermi4400.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1539540..1539595 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1.exon1Gvermi4400.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1538574..1538804 +
Gvermi4400.t1.exon2Gvermi4400.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1538905..1539031 +
Gvermi4400.t1.exon3Gvermi4400.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1539392..1539418 +
Gvermi4400.t1.exon4Gvermi4400.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1539540..1539595 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1.intron1Gvermi4400.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1538805..1538904 +
Gvermi4400.t1.intron2Gvermi4400.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1539032..1539391 +
Gvermi4400.t1.intron3Gvermi4400.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1539419..1539539 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4400.t1.stop1Gvermi4400.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1539593..1539595 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=147bp
MTSRVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSL
LDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELV
RKYESTFRQLKTRLTGHIYDSVFHARSHFPTCRETHRAARLPSPPC*
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spliced messenger RNA

>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_147:1538574..1539595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgacgagtagggtggaccagattgcgctgcacgtgcgcaagctggcgca
ggccaccggcgtcaaggccaggccggacgacggcgataacgagccgtcgc
tggacggcgtcacgtccgacctcgacatcgaggcgcttgcgaagagcctc
ctcgacgtctccaaggacctcgacctcttcctgcagacgctgctggaccc
ccctcaccttcccatcgccactctcaaatccGATATTGCCAAGCTTCAGC
AAGAACTCAAGGAGAAGGATGAGCTTTTCGACAAGTCGCTGGAACTTGTT
CGCAAGTACGAGTCCACCTTCCGCCAGCTCAAGACCCGACTCACTGGCCA
CATCTACGACAGCGTCTTTCACGCACGCTCACACTTCCCGACTTGCCGAG
AAACCCACCGTGCCGCGCGACTCCCCTCTCCACCATGCTAA
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protein sequence of Gvermi4400.t1

>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MTSRVDQIALHVRKLAQATGVKARPDDGDNEPSLDGVTSDLDIEALAKSL
LDVSKDLDLFLQTLLDPPHLPIATLKSDIAKLQQELKEKDELFDKSLELV
RKYESTFRQLKTRLTGHIYDSVFHARSHFPTCRETHRAARLPSPPC*
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mRNA from alignment at ScGOVlb_147:1538574..1539595+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1022bp|location=Sequence derived from alignment at ScGOVlb_147:1538574..1539595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgacgagtagggtggaccagattgcgctgcacgtgcgcaagctggcgca
ggccaccggcgtcaaggccaggccggacgacggcgataacgagccgtcgc
tggacggcgtcacgtccgacctcgacatcgaggcgcttgcgaagagcctc
ctcgacgtctccaaggacctcgacctcttcctgcagacgctgctggaccc
ccctcaccttcccatcgccactctcaaatccgtgcgttccttcgctgttc
ccgccgccccccacgcgcagcgcccccgggccccattgctcaccgccccg
ctcTGCTCTCTGCCTTGCTTTGCGAACGCAGGATATTGCCAAGCTTCAGC
AAGAACTCAAGGAGAAGGATGAGCTTTTCGACAAGTCGCTGGAACTTGTT
CGCAAGTACGAGTCCACCTTCCGCCAGCTCAAGACCCGACTCACTGGCCA
CATCTACGGTATGTGACGCTTAGCTCCGCGTCCGCCGCGCCCGCCTCCCC
CAACTGCCCCCGCTGCGGCCGCGCTGCGCGTTCGTGTCACCGCGGCCAAG
CTGCGCTCCTGCTTCCTTTGCTGCCACGACGCATCGTCGCCTCGCTCGCC
GTTGAGAAAGCACCGAAAAAAAGAAAACAAAAAGTCCCTCGCTCCCGCCT
GCCTCGTGCTCTCCAACAGTCGTTGCGCCCCTTCGCTCACCGTGCCAAGC
CACCAACACAGACACTGGAAGCGCCATGTTTGCAGCCCGCTTTTCTGTAC
CCGCCGCGTGGCGCTGGTGACGCCCTCGAATTGCCCTCACTTGTCTCTCT
AATTCAAACATCCCGCAGACAGCGTCTTTCACGCACGCTCACACTGTACG
CCTCGCCCCACAGCTCCTCCGCTCCCCCCCCCCGCCCCCTCCTTTATCGC
CTAACCAACACCACTCCGTATTCCCGGTTCTCACGGCTGTCGCCTTTGTT
CTGTCCGCGGCTTCAGTCCCGACTTGCCGAGAAACCCACCGTGCCGCGCG
ACTCCCCTCTCCACCATGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_147:1538574..1539595+

>Gvermi4400.t1 ID=Gvermi4400.t1|Name=Gvermi4400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=441bp|location=Sequence derived from alignment at ScGOVlb_147:1538574..1539595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgacgagtagggtggaccagattgcgctgcacgtgcgcaagctggcgca
ggccaccggcgtcaaggccaggccggacgacggcgataacgagccgtcgc
tggacggcgtcacgtccgacctcgacatcgaggcgcttgcgaagagcctc
ctcgacgtctccaaggacctcgacctcttcctgcagacgctgctggaccc
ccctcaccttcccatcgccactctcaaatccGATATTGCCAAGCTTCAGC
AAGAACTCAAGGAGAAGGATGAGCTTTTCGACAAGTCGCTGGAACTTGTT
CGCAAGTACGAGTCCACCTTCCGCCAGCTCAAGACCCGACTCACTGGCCA
CATCTACGACAGCGTCTTTCACGCACGCTCACACTTCCCGACTTGCCGAG
AAACCCACCGTGCCGCGCGACTCCCCTCTCCACCATGCTAA
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