Gvermi8207.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8207.t1
Unique NameGvermi8207.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1566938..1567546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008618980.1
Preferred nameDNTTIP2
PFAMsFcf2
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00061,RC00064,RC00090,RC00523
KEGG koko:K01867,ko:K03942,ko:K11205,ko:K20294
KEGG TC3.D.1.6
KEGG ReactionR00894,R03664,R10993,R11945
KEGG Pathwayko00190,ko00270,ko00480,ko00970,ko01100,ko04216,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00270,map00480,map00970,map01100,map04216,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00118,M00143,M00359,M00360
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363
Evalue4.46e-19
EggNOG OGsKOG3100@1|root,KOG3100@2759|Eukaryota
EC1.6.5.3,1.6.99.3,6.1.1.2
Descriptiontranscription, DNA-templated
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8207Gvermi8207Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1566938..1567546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8207.t1.stop1Gvermi8207.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1566938..1566940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8207.t1.CDS1Gvermi8207.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1566938..1567546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8207.t1.exon1Gvermi8207.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1566938..1567546 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8207.t1.start1Gvermi8207.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1567544..1567546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8207.t1Gvermi8207.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1566938..1567546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8207.t1 ID=Gvermi8207.t1|Name=Gvermi8207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=203bp
MVVENDNVVEGLSLPASKELFAQTNLDTTETFVKQDLDFLRSGRNRRQRK
KNNAPQPDWSKLEESVTQQKAEPVRNDLEDDENWHEMPVADLTPELQRDL
RVIENRQYLDPKRFYKSSGTGRKKGELPSRVQVGTILSGAHEFYSGRLSK
KERRARIIDQVLSSEKTVHYATSRFEKLQSERINNRRIVDPAFKRRKHRK
RR*
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spliced messenger RNA

>Gvermi8207.t1 ID=Gvermi8207.t1|Name=Gvermi8207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp|location=Sequence derived from alignment at ScGOVlb_24226:1566938..1567546- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCGAAAACGACAATGTGGTTGAAGGTTTGAGTCTACCCGCATC
CAAGGAGTTGTTTGCCCAAACAAACCTAGATACAACGGAGACGTTTGTAA
AGCAAGACCTTGACTTCCTTCGTTCTGGTCGGAATCGGCGTCAGCGGAAG
AAGAATAATGCTCCGCAACCAGATTGGAGTAAACTGGAAGAATCTGTCAC
ACAGCAGAAAGCAGAACCGGTTCGAAACGATCTTGAAGACGATGAAAATT
GGCATGAGATGCCAGTGGCAGACCTTACCCCAGAACTTCAACGCGATTTG
CGAGTTATAGAGAACCGTCAATACTTGGATCCTAAACGATTTTACAAGTC
ATCTGGCACCGGACGAAAGAAGGGAGAGCTGCCGTCAAGAGTTCAAGTCG
GAACCATCCTCTCCGGAGCTCATGAGTTTTACTCTGGTCGGTTGTCGAAG
AAAGAAAGGCGGGCGCGAATAATCGACCAGGTGCTTTCGAGCGAAAAAAC
TGTGCATTACGCAACAAGCAGATTTGAAAAGTTACAAAGCGAGCGGATTA
ATAATAGGCGCATTGTCGATCCTGCTTTCAAAAGAAGAAAGCACAGGAAA
AGACGCTAG
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protein sequence of Gvermi8207.t1

>Gvermi8207.t1 ID=Gvermi8207.t1|Name=Gvermi8207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=203bp
MVVENDNVVEGLSLPASKELFAQTNLDTTETFVKQDLDFLRSGRNRRQRK
KNNAPQPDWSKLEESVTQQKAEPVRNDLEDDENWHEMPVADLTPELQRDL
RVIENRQYLDPKRFYKSSGTGRKKGELPSRVQVGTILSGAHEFYSGRLSK
KERRARIIDQVLSSEKTVHYATSRFEKLQSERINNRRIVDPAFKRRKHRK
RR*
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mRNA from alignment at ScGOVlb_24226:1566938..1567546-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8207.t1 ID=Gvermi8207.t1|Name=Gvermi8207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp|location=Sequence derived from alignment at ScGOVlb_24226:1566938..1567546- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCGAAAACGACAATGTGGTTGAAGGTTTGAGTCTACCCGCATC
CAAGGAGTTGTTTGCCCAAACAAACCTAGATACAACGGAGACGTTTGTAA
AGCAAGACCTTGACTTCCTTCGTTCTGGTCGGAATCGGCGTCAGCGGAAG
AAGAATAATGCTCCGCAACCAGATTGGAGTAAACTGGAAGAATCTGTCAC
ACAGCAGAAAGCAGAACCGGTTCGAAACGATCTTGAAGACGATGAAAATT
GGCATGAGATGCCAGTGGCAGACCTTACCCCAGAACTTCAACGCGATTTG
CGAGTTATAGAGAACCGTCAATACTTGGATCCTAAACGATTTTACAAGTC
ATCTGGCACCGGACGAAAGAAGGGAGAGCTGCCGTCAAGAGTTCAAGTCG
GAACCATCCTCTCCGGAGCTCATGAGTTTTACTCTGGTCGGTTGTCGAAG
AAAGAAAGGCGGGCGCGAATAATCGACCAGGTGCTTTCGAGCGAAAAAAC
TGTGCATTACGCAACAAGCAGATTTGAAAAGTTACAAAGCGAGCGGATTA
ATAATAGGCGCATTGTCGATCCTGCTTTCAAAAGAAGAAAGCACAGGAAA
AGACGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1566938..1567546-

>Gvermi8207.t1 ID=Gvermi8207.t1|Name=Gvermi8207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=609bp|location=Sequence derived from alignment at ScGOVlb_24226:1566938..1567546- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCGAAAACGACAATGTGGTTGAAGGTTTGAGTCTACCCGCATC
CAAGGAGTTGTTTGCCCAAACAAACCTAGATACAACGGAGACGTTTGTAA
AGCAAGACCTTGACTTCCTTCGTTCTGGTCGGAATCGGCGTCAGCGGAAG
AAGAATAATGCTCCGCAACCAGATTGGAGTAAACTGGAAGAATCTGTCAC
ACAGCAGAAAGCAGAACCGGTTCGAAACGATCTTGAAGACGATGAAAATT
GGCATGAGATGCCAGTGGCAGACCTTACCCCAGAACTTCAACGCGATTTG
CGAGTTATAGAGAACCGTCAATACTTGGATCCTAAACGATTTTACAAGTC
ATCTGGCACCGGACGAAAGAAGGGAGAGCTGCCGTCAAGAGTTCAAGTCG
GAACCATCCTCTCCGGAGCTCATGAGTTTTACTCTGGTCGGTTGTCGAAG
AAAGAAAGGCGGGCGCGAATAATCGACCAGGTGCTTTCGAGCGAAAAAAC
TGTGCATTACGCAACAAGCAGATTTGAAAAGTTACAAAGCGAGCGGATTA
ATAATAGGCGCATTGTCGATCCTGCTTTCAAAAGAAGAAAGCACAGGAAA
AGACGCTAG
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