Gvermi6043.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6043.t1
Unique NameGvermi6043.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length101
Homology
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A2V3J0K9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0K9_9FLOR)

HSP 1 Score: 159 bits (401), Expect = 9.730e-49
Identity = 82/100 (82.00%), Postives = 90/100 (90.00%), Query Frame = 0
Query:    1 MYAFVSTTGLALARPGSFTAARCTVAARPVTRRNTAPAKMTLGGPLATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 100
            MYAFV TTGL  ARPG+FT  RCTV+ARPV RR TAPAKM++   LATLP+LP+AEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGER+GRG+E
Sbjct:    1 MYAFVGTTGLIAARPGAFTVNRCTVSARPVARRATAPAKMSIENTLATLPSLPVAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERIGRGEE 100          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A7S1XCP1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCP1_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 4.680e-15
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    1 MYAFVSTTGLALA--RPGSFTAARCTVAA-RPVTRRNTAPAKMTLGGPLATLPTLPLAEG--MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGD 99
            M AFV + G  +   R    +A+R TVAA R  TR  T   +M++G     L  + +AEG  MAVTFPAYLAVFLGTL P AFLI+L+IQ+E+RKAGE  GRG+
Sbjct:   23 MTAFVGSCGSFVTGTRAVQVSASRKTVAAPRRATRVVT---RMSVG----ELANVMIAEGGGMAVTFPAYLAVFLGTLFPVAFLIILFIQSEARKAGEEAGRGE 119          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A4D9CNG8_9STRA (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A4D9CNG8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.190e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0
Query:   58 MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGD 99
            + VTF AYLAV LGT +P AFLI+LYIQ+ESRKAGE  GRG+
Sbjct:   82 LEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGRGE 123          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A835ZJC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJC8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-9
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   49 LPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGR 97
            LPT  +A  + V F AYLAV LGT +P AFLIVLYIQ+ESRKAGER GR
Sbjct:   68 LPTQLMA--LEVQFGAYLAVLLGTFVPVAFLIVLYIQSESRKAGERSGR 114          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A5J4YYD7_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYD7_PORPP)

HSP 1 Score: 58.5 bits (140), Expect = 4.540e-9
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0
Query:   54 LAEG--MAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAG 92
            LAEG  M+V+FPAYLAV LGT +P AFL++LYIQ+E+RKAG
Sbjct:   54 LAEGGGMSVSFPAYLAVLLGTFVPVAFLVILYIQSEARKAG 94          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A7J7IRK1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRK1_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 3.000e-8
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   46 LATLPTLPLAE---GMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAG-ERVGRGDE 100
            L+ LP+L  A     M V F AYLAVFLGTLIP AFLI+LYIQ+E+RKA  E V  G E
Sbjct:   42 LSGLPSLANAGEDGAMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGGSE 100          
BLAST of Gvermi6043.t1 vs. uniprot
Match: M1V7K1_CYAM1 (Photosystem II protein M n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7K1_CYAM1)

HSP 1 Score: 57.4 bits (137), Expect = 3.540e-8
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   40 MTLGGPLATLPTLPLA---EGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERV--GRGDE 100
            ++L   +  LP++  A    GM V F AYLAVFLGTLIP AFLI+LYIQ+E+RKA      G G E
Sbjct:   77 VSLAAAMWALPSMGYAAEESGMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGSGSE 142          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A7S1UBI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBI4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.000e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0
Query:   46 LATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 100
            +A +PT  +A  + V F AYLA  LGT +P AFLI+LYIQ E+RKAG + G  D+
Sbjct:   63 IANMPTESVA--LEVQFAAYLATLLGTFVPVAFLIILYIQTETRKAGAQFGDSDD 115          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A7S2LHI4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHI4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-7
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0
Query:   49 LPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE 100
            LPT  +A  + + F AYLAV LGT +PC FLI LY+Q ESRKAG   G+  E
Sbjct:   77 LPTQTVA--LEIQFAAYLAVLLGTFLPCLFLINLYVQTESRKAGRAGGQDSE 126          
BLAST of Gvermi6043.t1 vs. uniprot
Match: A0A1Z5J666_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J666_FISSO)

HSP 1 Score: 53.1 bits (126), Expect = 5.860e-7
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0
Query:   21 ARCTVAARPVTRRNTAPAKMTLGGPLATLPTLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVG 96
            A+   AA PV   + APA   L   +A +PT  +A  + V F AY+AV LGTL+PC FLI L+IQ ESRKAG + G
Sbjct:   27 AKAATAAVPVAALS-APA-FALDSIVANMPTNTVA--LEVQFGAYMAVALGTLLPCLFLINLFIQTESRKAGRQGG 98          
The following BLAST results are available for this feature:
BLAST of Gvermi6043.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2V3J0K9_9FLOR9.730e-4982.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1XCP1_9RHOD4.680e-1552.88Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A4D9CNG8_9STRA1.190e-1071.43Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A835ZJC8_9STRA1.110e-969.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YYD7_PORPP4.540e-970.73Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7J7IRK1_9RHOD3.000e-861.02Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1V7K1_CYAM13.540e-853.03Photosystem II protein M n=1 Tax=Cyanidioschyzon m... [more]
A0A7S1UBI4_9STRA1.000e-752.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LHI4_9STRA3.450e-755.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5J666_FISSO5.860e-750.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007826Photosystem II PsbMPFAMPF05151PsbMcoord: 58..88
e-value: 2.1E-6
score: 27.5
IPR007826Photosystem II PsbMTIGRFAMTIGR03038TIGR03038coord: 58..90
e-value: 1.8E-12
score: 44.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..84
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
IPR037269Photosystem II PsbM superfamilySUPERFAMILY161033Photosystem II reaction center protein M, PsbMcoord: 58..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1857715..1858295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1Gvermi6043.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1857715..1858295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=101bp
MYAFVSTTGLALARPGSFTAARCTVAARPVTRRNTAPAKMTLGGPLATLP
TLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007826PSII_PsbM
IPR037269PSII_PsbM_sf