Gvermi6043.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6043.t1
Unique NameGvermi6043.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length101
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1857715..1858295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX34729
Preferred namePsbM
PFAMsPsbM
Max annot lvl2759|Eukaryota
KEGG koko:K02714
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue6.74e-08
EggNOG OGs2E8DZ@1|root,2SEWM@2759|Eukaryota
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6043Gvermi6043Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1857715..1858295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1Gvermi6043.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1857715..1858295 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1.start1Gvermi6043.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1857715..1857717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1.CDS1Gvermi6043.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1857715..1857771 +
Gvermi6043.t1.CDS2Gvermi6043.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1858050..1858295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1.exon1Gvermi6043.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1857715..1857771 +
Gvermi6043.t1.exon2Gvermi6043.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1858050..1858295 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1.intron1Gvermi6043.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1708 1857772..1858049 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6043.t1.stop1Gvermi6043.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1858293..1858295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=101bp
MYAFVSTTGLALARPGSFTAARCTVAARPVTRRNTAPAKMTLGGPLATLP
TLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE
*
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spliced messenger RNA

>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=303bp|location=Sequence derived from alignment at ScGOVlb_1708:1857715..1858295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCCTTCGTCTCCACAACCGGCCTCGCCCTTGCCCGCCCAGGCTC
CTTCACTGCTGCTCGATGCACAGTCGCCGCACGGCCTGTTACCCGCAGGA
ACACCGCGCCGGCGAAAATGACTTTGGGTGGCCCCTTGGCCACCCTGCCC
ACGCTGCCACTGGCGGAGGGCATGGCTGTAACATTTCCCGCGTACCTGGC
CGTCTTCCTTGGAACTCTCATCCCGTGCGCGTTTTTGATTGTGTTGTACA
TCCAGGCCGAAAGCCGCAAGGCGGGTGAGAGGGTCGGGCGGGGAGATGAG
TAG
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protein sequence of Gvermi6043.t1

>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=101bp
MYAFVSTTGLALARPGSFTAARCTVAARPVTRRNTAPAKMTLGGPLATLP
TLPLAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERVGRGDE
*
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mRNA from alignment at ScGOVlb_1708:1857715..1858295+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=581bp|location=Sequence derived from alignment at ScGOVlb_1708:1857715..1858295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCTTCGTCTCCACAACCGGCCTCGCCCTTGCCCGCCCAGGCTC
CTTCACTGTAGGTTAACTCCCCGCTCTTTAATCGTATGTGCATTTCGCGA
GCGCCCCGTctgcgctgcgcgcgctgcacgctccgcgcttgtcgcgctTC
TGCCAGCTCCGCGACGAAAGCGGGCCAGGACCGCAGCTCCCGAAGCGCTT
TGGTCGGGCGCGAAAGTGAAAACATACAGACTCGCGGACAGGTTTACGAG
AAGCCTCACTACAGATGCTAACTATTTGATGTCCATTTCTGCCGTGCAAC
ACCATGCTTCCCCCGACGCACGCTCCACGTCACAGGCTGCTCGATGCACA
GTCGCCGCACGGCCTGTTACCCGCAGGAACACCGCGCCGGCGAAAATGAC
TTTGGGTGGCCCCTTGGCCACCCTGCCCACGCTGCCACTGGCGGAGGGCA
TGGCTGTAACATTTCCCGCGTACCTGGCCGTCTTCCTTGGAACTCTCATC
CCGTGCGCGTTTTTGATTGTGTTGTACATCCAGGCCGAAAGCCGCAAGGC
GGGTGAGAGGGTCGGGCGGGGAGATGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1857715..1858295+

>Gvermi6043.t1 ID=Gvermi6043.t1|Name=Gvermi6043.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=303bp|location=Sequence derived from alignment at ScGOVlb_1708:1857715..1858295+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCTTCGTCTCCACAACCGGCCTCGCCCTTGCCCGCCCAGGCTC
CTTCACTGCTGCTCGATGCACAGTCGCCGCACGGCCTGTTACCCGCAGGA
ACACCGCGCCGGCGAAAATGACTTTGGGTGGCCCCTTGGCCACCCTGCCC
ACGCTGCCACTGGCGGAGGGCATGGCTGTAACATTTCCCGCGTACCTGGC
CGTCTTCCTTGGAACTCTCATCCCGTGCGCGTTTTTGATTGTGTTGTACA
TCCAGGCCGAAAGCCGCAAGGCGGGTGAGAGGGTCGGGCGGGGAGATGAG
TAG
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