Gvermi6553.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6553.t1
Unique Name	Gvermi6553.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	599

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1317599..1319395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6553	Gvermi6553	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1317599..1319395 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6553.t1.start1	Gvermi6553.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1317599..1317601 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6553.t1.CDS1	Gvermi6553.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1317599..1319395 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6553.t1.exon1	Gvermi6553.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1317599..1319395 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6553.t1.stop1	Gvermi6553.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1319393..1319395 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6553.t1	Gvermi6553.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1317599..1319395 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1317599..1319395+
coding sequence from alignment at ScGOVlb_88:1317599..1319395+

mRNA sequence

>Gvermi6553.t1 ID=Gvermi6553.t1|Name=Gvermi6553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=599bp
MNSNRPTRASNRKRRPSPSISSPVDDDDNAKNEAQDESGSTDIADDLLVE
PGGKDLEDWSRDVDEEDDVTLEQLLLDDGEEEDEALVDDELLLNGDFQED
PEDLAINDVFDDVDDDEEDEEDEDEDEDEDEDSDGFEEDDELAAQADGDG
FDEEVSIPAGRKRKQRTVTKARGVSSKVPEDEENVEPSEDVLDSIRDGFQ
PVFEPKDVDGDDSNADLTSISDKDLNDDSEEQNAEDIRNAANILSKSGIL
GLGFEAEEQGAISAPQTSSSTDDSKLKGDEEYDLENLYDFEDETEIEGNE
ESEFDSIEARERKQRQVDAEFALTSESSFGKVWELNEDTYVTITDPGQAY
AYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSENLPVGSKEYIARRS
YELLSKFSPAEMFQWTRRHGPPPKDIEDLYPKRKPKLTALGKQILTLSPP
GSTHTEDPQASQESGDGGKRRRNKASGKTNRSKVNSAMIRVSENSPSSGR
SSKNKKSPEHERAALDRSMEFPCLFKFKIEPCEEGFQCQIQPIVENALKR
DVEQLSFSVEKEGKLERIEFSVIVENSKEITDIFEAFHGDERVKRSYG*

spliced messenger RNA

>Gvermi6553.t1 ID=Gvermi6553.t1|Name=Gvermi6553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at ScGOVlb_88:1317599..1319395+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCAATCGCCCCACAAGAGCTTCAAATCGGAAACGCAGACCGAG
CCCATCGATATCATCACCGGTTGATGACGACGATAATGCCAAGAACGAAG
CTCAAGACGAATCAGGCTCAACAGATATAGCGGATGATCTTTTAGTCGAA
CCAGGTGGAAAGGATTTAGAGGATTGGTCTCGTGATGTAGATGAAGAGGA
TGATGTGACTCTGGAACAATTACTCCTCgatgacggggaggaagaagatg
aagctttagttgatgatgaaCTTCTATTGAATGGCGACTTTCAGGAAGAC
CCGGAGGACCTTGCTATAAATGATGTCTTTgatgatgtcgatgacgatga
agaggacgaggaagacgaggatgaagacgaagatgaagatgaagactctg
acggatttgaagaagatgacgaacttGCTGCGCAGGCTGATGGGGACGGT
TTTGACGAGGAAGTTTCAATTCCAGCTGGAAGAAAAAGAAAGCAGCGCAC
CGTGACAAAAGCAAGAGGTGTTTCTTCGAAGGTGCCAGAAGACGAGGAAA
ACGTAGAACCTTCAGAAGATGTACTAGATTCAATAAGAGACGGATTTCAA
CCTGTGTTTGAGCCTAAAGATGTTGATGGAGATGATTCTAATGCAGACCT
AACATCAATAAGCGATAAGGATTTGAATGATGATTCAGAAGAACAGAACG
CCGAAGATATTAGGAACGCTGCCAATATCTTGTCCAAAAGCGGAATTCTC
GGACTTGGCTTTGAAGCGGAGGAGCAAGGTGCCATATCGGCGCCCCAGAC
CTCGTCTTCTACAGACGATTCCAAACTAAAGGGTGATGAAGAATATGATT
TGGAAAATTTATACGATTTCGAAGATGAAACAGAGATTGAGGGAAACGAA
GAGAGTGAGTTTGACTCGATTGAAGCAAGGGAACGGAAACAACGGCAAGT
AGACGCTGAGTTTGCTCTAACATCTGAATCAAGCTTTGGAAAGGTATGGG
AACTGAACGAGGACACGTATGTCACCATTACAGATCCAGGACAAGCCTAC
GCCTATGAACTGGACGAAGACGACGAAGAAGACCAAGAAATGTCGACTGT
TAGGAGAGGAAAGCAAGGCGGATGGAGCGGCGGCCTGGCATCGTATCCCA
CTTCAGAAAATTTGCCAGTGGGGTCCAAGGAATATATCGCACGCCGTTCA
TATGAGTTGCTTTCCAAGTTTTCACCCGCGGAAATGTTTCAATGGACTCG
ACGACACGGCCCCCCACCAAAGGATATAGAAGATCTTTATCCAAAAAGGA
AACCAAAATTGACTGCCCTCGGGAAACAAATATTAACCCTATCACCTCCA
GGATCTACGCATACGGAAGATCCACAGGCTAGTCAAGAAAGTGGGGACGG
TGGCAAAAGACGCCGTAATAAGGCAAGCGGAAAGACAAATCGAAGTAAGG
TGAACAGCGCTATGATTCGTGTTTCCGAGAATAGCCCTTCATCTGGTCGA
TCATCGAAGAATAAAAAAAGCCCTGAACACGAAAGAGCAGCTCTGGATCG
GTCAATGGAATTCCCTTGCTTGTTCAAGTTTAAGATCGAGCCCTGTGAGG
AAGGGTTCCAGTGTCAAATACAGCCAATAGTGGAGAATGCCTTAAAGAGG
GATGTGGAACAGCTCTCATTTTCAGTCGAGAAAGAAGGGAAACTGGAAAG
AATTGAATTCAGTGTCATTGTTGAGAATTCGAAAGAAATCACAGACATCT
TCGAAGCGTTTCACGGTGATGAACGCGTCAAACGTAGCTACGGATAA

protein sequence of Gvermi6553.t1

>Gvermi6553.t1 ID=Gvermi6553.t1|Name=Gvermi6553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=599bp
MNSNRPTRASNRKRRPSPSISSPVDDDDNAKNEAQDESGSTDIADDLLVE
PGGKDLEDWSRDVDEEDDVTLEQLLLDDGEEEDEALVDDELLLNGDFQED
PEDLAINDVFDDVDDDEEDEEDEDEDEDEDEDSDGFEEDDELAAQADGDG
FDEEVSIPAGRKRKQRTVTKARGVSSKVPEDEENVEPSEDVLDSIRDGFQ
PVFEPKDVDGDDSNADLTSISDKDLNDDSEEQNAEDIRNAANILSKSGIL
GLGFEAEEQGAISAPQTSSSTDDSKLKGDEEYDLENLYDFEDETEIEGNE
ESEFDSIEARERKQRQVDAEFALTSESSFGKVWELNEDTYVTITDPGQAY
AYELDEDDEEDQEMSTVRRGKQGGWSGGLASYPTSENLPVGSKEYIARRS
YELLSKFSPAEMFQWTRRHGPPPKDIEDLYPKRKPKLTALGKQILTLSPP
GSTHTEDPQASQESGDGGKRRRNKASGKTNRSKVNSAMIRVSENSPSSGR
SSKNKKSPEHERAALDRSMEFPCLFKFKIEPCEEGFQCQIQPIVENALKR
DVEQLSFSVEKEGKLERIEFSVIVENSKEITDIFEAFHGDERVKRSYG*

mRNA from alignment at ScGOVlb_88:1317599..1319395+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6553.t1 ID=Gvermi6553.t1|Name=Gvermi6553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at ScGOVlb_88:1317599..1319395+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCAATCGCCCCACAAGAGCTTCAAATCGGAAACGCAGACCGAG
CCCATCGATATCATCACCGGTTGATGACGACGATAATGCCAAGAACGAAG
CTCAAGACGAATCAGGCTCAACAGATATAGCGGATGATCTTTTAGTCGAA
CCAGGTGGAAAGGATTTAGAGGATTGGTCTCGTGATGTAGATGAAGAGGA
TGATGTGACTCTGGAACAATTACTCCTCgatgacggggaggaagaagatg
aagctttagttgatgatgaaCTTCTATTGAATGGCGACTTTCAGGAAGAC
CCGGAGGACCTTGCTATAAATGATGTCTTTgatgatgtcgatgacgatga
agaggacgaggaagacgaggatgaagacgaagatgaagatgaagactctg
acggatttgaagaagatgacgaacttGCTGCGCAGGCTGATGGGGACGGT
TTTGACGAGGAAGTTTCAATTCCAGCTGGAAGAAAAAGAAAGCAGCGCAC
CGTGACAAAAGCAAGAGGTGTTTCTTCGAAGGTGCCAGAAGACGAGGAAA
ACGTAGAACCTTCAGAAGATGTACTAGATTCAATAAGAGACGGATTTCAA
CCTGTGTTTGAGCCTAAAGATGTTGATGGAGATGATTCTAATGCAGACCT
AACATCAATAAGCGATAAGGATTTGAATGATGATTCAGAAGAACAGAACG
CCGAAGATATTAGGAACGCTGCCAATATCTTGTCCAAAAGCGGAATTCTC
GGACTTGGCTTTGAAGCGGAGGAGCAAGGTGCCATATCGGCGCCCCAGAC
CTCGTCTTCTACAGACGATTCCAAACTAAAGGGTGATGAAGAATATGATT
TGGAAAATTTATACGATTTCGAAGATGAAACAGAGATTGAGGGAAACGAA
GAGAGTGAGTTTGACTCGATTGAAGCAAGGGAACGGAAACAACGGCAAGT
AGACGCTGAGTTTGCTCTAACATCTGAATCAAGCTTTGGAAAGGTATGGG
AACTGAACGAGGACACGTATGTCACCATTACAGATCCAGGACAAGCCTAC
GCCTATGAACTGGACGAAGACGACGAAGAAGACCAAGAAATGTCGACTGT
TAGGAGAGGAAAGCAAGGCGGATGGAGCGGCGGCCTGGCATCGTATCCCA
CTTCAGAAAATTTGCCAGTGGGGTCCAAGGAATATATCGCACGCCGTTCA
TATGAGTTGCTTTCCAAGTTTTCACCCGCGGAAATGTTTCAATGGACTCG
ACGACACGGCCCCCCACCAAAGGATATAGAAGATCTTTATCCAAAAAGGA
AACCAAAATTGACTGCCCTCGGGAAACAAATATTAACCCTATCACCTCCA
GGATCTACGCATACGGAAGATCCACAGGCTAGTCAAGAAAGTGGGGACGG
TGGCAAAAGACGCCGTAATAAGGCAAGCGGAAAGACAAATCGAAGTAAGG
TGAACAGCGCTATGATTCGTGTTTCCGAGAATAGCCCTTCATCTGGTCGA
TCATCGAAGAATAAAAAAAGCCCTGAACACGAAAGAGCAGCTCTGGATCG
GTCAATGGAATTCCCTTGCTTGTTCAAGTTTAAGATCGAGCCCTGTGAGG
AAGGGTTCCAGTGTCAAATACAGCCAATAGTGGAGAATGCCTTAAAGAGG
GATGTGGAACAGCTCTCATTTTCAGTCGAGAAAGAAGGGAAACTGGAAAG
AATTGAATTCAGTGTCATTGTTGAGAATTCGAAAGAAATCACAGACATCT
TCGAAGCGTTTCACGGTGATGAACGCGTCAAACGTAGCTACGGATAA

Coding sequence (CDS) from alignment at ScGOVlb_88:1317599..1319395+

>Gvermi6553.t1 ID=Gvermi6553.t1|Name=Gvermi6553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1797bp|location=Sequence derived from alignment at ScGOVlb_88:1317599..1319395+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCAATCGCCCCACAAGAGCTTCAAATCGGAAACGCAGACCGAG
CCCATCGATATCATCACCGGTTGATGACGACGATAATGCCAAGAACGAAG
CTCAAGACGAATCAGGCTCAACAGATATAGCGGATGATCTTTTAGTCGAA
CCAGGTGGAAAGGATTTAGAGGATTGGTCTCGTGATGTAGATGAAGAGGA
TGATGTGACTCTGGAACAATTACTCCTCgatgacggggaggaagaagatg
aagctttagttgatgatgaaCTTCTATTGAATGGCGACTTTCAGGAAGAC
CCGGAGGACCTTGCTATAAATGATGTCTTTgatgatgtcgatgacgatga
agaggacgaggaagacgaggatgaagacgaagatgaagatgaagactctg
acggatttgaagaagatgacgaacttGCTGCGCAGGCTGATGGGGACGGT
TTTGACGAGGAAGTTTCAATTCCAGCTGGAAGAAAAAGAAAGCAGCGCAC
CGTGACAAAAGCAAGAGGTGTTTCTTCGAAGGTGCCAGAAGACGAGGAAA
ACGTAGAACCTTCAGAAGATGTACTAGATTCAATAAGAGACGGATTTCAA
CCTGTGTTTGAGCCTAAAGATGTTGATGGAGATGATTCTAATGCAGACCT
AACATCAATAAGCGATAAGGATTTGAATGATGATTCAGAAGAACAGAACG
CCGAAGATATTAGGAACGCTGCCAATATCTTGTCCAAAAGCGGAATTCTC
GGACTTGGCTTTGAAGCGGAGGAGCAAGGTGCCATATCGGCGCCCCAGAC
CTCGTCTTCTACAGACGATTCCAAACTAAAGGGTGATGAAGAATATGATT
TGGAAAATTTATACGATTTCGAAGATGAAACAGAGATTGAGGGAAACGAA
GAGAGTGAGTTTGACTCGATTGAAGCAAGGGAACGGAAACAACGGCAAGT
AGACGCTGAGTTTGCTCTAACATCTGAATCAAGCTTTGGAAAGGTATGGG
AACTGAACGAGGACACGTATGTCACCATTACAGATCCAGGACAAGCCTAC
GCCTATGAACTGGACGAAGACGACGAAGAAGACCAAGAAATGTCGACTGT
TAGGAGAGGAAAGCAAGGCGGATGGAGCGGCGGCCTGGCATCGTATCCCA
CTTCAGAAAATTTGCCAGTGGGGTCCAAGGAATATATCGCACGCCGTTCA
TATGAGTTGCTTTCCAAGTTTTCACCCGCGGAAATGTTTCAATGGACTCG
ACGACACGGCCCCCCACCAAAGGATATAGAAGATCTTTATCCAAAAAGGA
AACCAAAATTGACTGCCCTCGGGAAACAAATATTAACCCTATCACCTCCA
GGATCTACGCATACGGAAGATCCACAGGCTAGTCAAGAAAGTGGGGACGG
TGGCAAAAGACGCCGTAATAAGGCAAGCGGAAAGACAAATCGAAGTAAGG
TGAACAGCGCTATGATTCGTGTTTCCGAGAATAGCCCTTCATCTGGTCGA
TCATCGAAGAATAAAAAAAGCCCTGAACACGAAAGAGCAGCTCTGGATCG
GTCAATGGAATTCCCTTGCTTGTTCAAGTTTAAGATCGAGCCCTGTGAGG
AAGGGTTCCAGTGTCAAATACAGCCAATAGTGGAGAATGCCTTAAAGAGG
GATGTGGAACAGCTCTCATTTTCAGTCGAGAAAGAAGGGAAACTGGAAAG
AATTGAATTCAGTGTCATTGTTGAGAATTCGAAAGAAATCACAGACATCT
TCGAAGCGTTTCACGGTGATGAACGCGTCAAACGTAGCTACGGATAA