Gvermi1875.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi1875.t1
Unique NameGvermi1875.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length296
Homology
BLAST of Gvermi1875.t1 vs. uniprot
Match: A0A2V3ISA4_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 117 bits (294), Expect = 4.310e-28
Identity = 68/202 (33.66%), Postives = 111/202 (54.95%), Query Frame = 0
Query:  104 AQLRAKVDAAMAVTRGSKCNPNVCFVMDGSARLSDDDFRQQKDFVKLVAAIVAFDEGAGLAAVSYSRRVTRLAALTSDADSFLLRMESACRQCPCSMRPLVGSGIRMCDRELKKASG-AKKMVVFGDDQNTTTRR--------VAKRFLAQEGTGLCTVQVGGTTAA-----DGGESDVLTIDSWSEIVDILEELVRALCDA 291
            A  RA++D A+ +   + C PN+CF +DGS+ ++DD+F+ Q DFV L+  +V+ DE +G +A+ Y  R   ++  T DA +FLL++E   RQ   S+R  +  GI  C R+ ++  G A K+++ GD ++T   R        +A +FLA+    +C V V   T        G    V ++  W  +VD+L +LV  +C A
Sbjct:   36 AANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGT-RQLR-SVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVCGA 235          
BLAST of Gvermi1875.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 1.150e-21
Identity = 64/197 (32.49%), Postives = 100/197 (50.76%), Query Frame = 0
Query:  108 AKVDAAMAVTRGSKCNPNVCFVMDGSARLSDDDFRQQKDFVKLVAAIVAFDEGAGLAAVSYSRRVTRLAALTSDADSFLLRMESACRQCPCSMRPLVGSGIRMCDRELKKASGAKK-MVVFGDDQNTTTRR--------VAKRFLAQEGTGLCTVQVGGT------TAADGGESDVLTIDSWSEIVDILEELVRALC 289
            A+V  A+ +   ++C+PN+CF +DGS  +   +F+ +KDF  LVAA+VA+DE A  AAV Y  R   ++ LT DAD+FL  +     +   + R  +  G+  C R+     G  K +V+ GD ++    +        +A+ FLA     +  V VG        T   GGE +V  +  W E+  +L ELV  +C
Sbjct:   43 AEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYT--ESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVC 237          
The following BLAST results are available for this feature:
BLAST of Gvermi1875.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISA4_9FLOR4.310e-2833.66VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR5_9FLOR1.150e-2132.49Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 110..291
e-value: 9.6E-14
score: 53.4
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 122..292
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 125..255
e-value: 6.2E-6
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..102
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..295
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableCDDcd00198vWFAcoord: 125..262
e-value: 1.20133E-5
score: 42.553

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:975559..976446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1Gvermi1875.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1622 975559..976446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=296bp
MMARIYFWLLLACLAWHSPRAVVCGSLASQSITSYIETYSSDDGTTSYGV
LSSSSASSLEASSNDDVGSFASNEPLSAESASPVKKPTQTNGPPRRRRFR
RSRAQLRAKVDAAMAVTRGSKCNPNVCFVMDGSARLSDDDFRQQKDFVKL
VAAIVAFDEGAGLAAVSYSRRVTRLAALTSDADSFLLRMESACRQCPCSM
RPLVGSGIRMCDRELKKASGAKKMVVFGDDQNTTTRRVAKRFLAQEGTGL
CTVQVGGTTAADGGESDVLTIDSWSEIVDILEELVRALCDAPQGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR002035VWF_A