Gvermi1875.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1875.t1
Unique NameGvermi1875.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:975559..976446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1875Gvermi1875Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 975559..976446 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1.start1Gvermi1875.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 975559..975561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1.CDS1Gvermi1875.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 975559..976446 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1.exon1Gvermi1875.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 975559..976446 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1.stop1Gvermi1875.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 976444..976446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1875.t1Gvermi1875.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 975559..976446 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=296bp
MMARIYFWLLLACLAWHSPRAVVCGSLASQSITSYIETYSSDDGTTSYGV
LSSSSASSLEASSNDDVGSFASNEPLSAESASPVKKPTQTNGPPRRRRFR
RSRAQLRAKVDAAMAVTRGSKCNPNVCFVMDGSARLSDDDFRQQKDFVKL
VAAIVAFDEGAGLAAVSYSRRVTRLAALTSDADSFLLRMESACRQCPCSM
RPLVGSGIRMCDRELKKASGAKKMVVFGDDQNTTTRRVAKRFLAQEGTGL
CTVQVGGTTAADGGESDVLTIDSWSEIVDILEELVRALCDAPQGF*
back to top

spliced messenger RNA

>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_1622:975559..976446+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGAGAATCTACTTTTGGCTGCTTTTGGCATGCCTGGCGTGGCA
TTCGCCCAGGGCGGTGGTATGCGGGTCCTTGGCCTCACAATCTATCACCT
CTTACATCGAAACATATTCTTCGGACGATGGTACCACTTCATACGGCGTT
TTGTCTTCCTCGAGCGCGTCCTCCTTGGAAGCATCTTCCAACGACGATGT
TGGGTCATTCGCTTCAAATGAGCCCCTTTCAGCCGAAAGTGCGTCACCCG
TAAAGAAGCCGACACAAACCAACGGACCCCCACGAAGACGCCGCTTCCGC
CGCAGCCGAGCACAATTGCGCGCCAAGGTGGACGCCGCCATGGCGGTCAC
GCGAGGCAGCAAGTGTAACCCCAACGTGTGCTTTGTGATGGACGGCAGCG
CGCGTCTTTCAGACGACGACTTTCGCCAACAAAAAGACTTTGTGAAGCTG
GTGGCGGCCATCGTAGCTTTTGATGAGGGCGCAGGATTAGCGGCCGTGAG
CTATTCGCGGCGCGTCACGCGACTGGCGGCACTCACCAGTGACGCCGACT
CGTTTCTGCTGCGCATGGAAAGTGCATGCCGACAGTGCCCTTGCTCAATG
AGGCCGTTGGTGGGAAGTGGAATTCGAATGTGCGATAGAGAGCTGAAAAA
GGCGAGCGGGGCGAAAAAGATGGTTGTGTTTGGCGATGATCAGAACACCA
CAACTCGGCGCGTGGCTAAACGGTTCCTGGCGCAGGAAGGTACGGGGCTT
TGCACGGTACAGGTTGGCGGGACGACTGCGGCGGACGGCGGGGAGTCAGA
CGTGCTGACTATTGACAGTTGGTCTGAGATCGTTGACATCTTAGAGGAGC
TGGTTCGCGCATTGTGTGATGCGCCGCAGGGGTTCTGA
back to top

protein sequence of Gvermi1875.t1

>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=296bp
MMARIYFWLLLACLAWHSPRAVVCGSLASQSITSYIETYSSDDGTTSYGV
LSSSSASSLEASSNDDVGSFASNEPLSAESASPVKKPTQTNGPPRRRRFR
RSRAQLRAKVDAAMAVTRGSKCNPNVCFVMDGSARLSDDDFRQQKDFVKL
VAAIVAFDEGAGLAAVSYSRRVTRLAALTSDADSFLLRMESACRQCPCSM
RPLVGSGIRMCDRELKKASGAKKMVVFGDDQNTTTRRVAKRFLAQEGTGL
CTVQVGGTTAADGGESDVLTIDSWSEIVDILEELVRALCDAPQGF*
back to top

mRNA from alignment at ScGOVlb_1622:975559..976446+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_1622:975559..976446+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCGAGAATCTACTTTTGGCTGCTTTTGGCATGCCTGGCGTGGCA
TTCGCCCAGGGCGGTGGTATGCGGGTCCTTGGCCTCACAATCTATCACCT
CTTACATCGAAACATATTCTTCGGACGATGGTACCACTTCATACGGCGTT
TTGTCTTCCTCGAGCGCGTCCTCCTTGGAAGCATCTTCCAACGACGATGT
TGGGTCATTCGCTTCAAATGAGCCCCTTTCAGCCGAAAGTGCGTCACCCG
TAAAGAAGCCGACACAAACCAACGGACCCCCACGAAGACGCCGCTTCCGC
CGCAGCCGAGCACAATTGCGCGCCAAGGTGGACGCCGCCATGGCGGTCAC
GCGAGGCAGCAAGTGTAACCCCAACGTGTGCTTTGTGATGGACGGCAGCG
CGCGTCTTTCAGACGACGACTTTCGCCAACAAAAAGACTTTGTGAAGCTG
GTGGCGGCCATCGTAGCTTTTGATGAGGGCGCAGGATTAGCGGCCGTGAG
CTATTCGCGGCGCGTCACGCGACTGGCGGCACTCACCAGTGACGCCGACT
CGTTTCTGCTGCGCATGGAAAGTGCATGCCGACAGTGCCCTTGCTCAATG
AGGCCGTTGGTGGGAAGTGGAATTCGAATGTGCGATAGAGAGCTGAAAAA
GGCGAGCGGGGCGAAAAAGATGGTTGTGTTTGGCGATGATCAGAACACCA
CAACTCGGCGCGTGGCTAAACGGTTCCTGGCGCAGGAAGGTACGGGGCTT
TGCACGGTACAGGTTGGCGGGACGACTGCGGCGGACGGCGGGGAGTCAGA
CGTGCTGACTATTGACAGTTGGTCTGAGATCGTTGACATCTTAGAGGAGC
TGGTTCGCGCATTGTGTGATGCGCCGCAGGGGTTCTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_1622:975559..976446+

>Gvermi1875.t1 ID=Gvermi1875.t1|Name=Gvermi1875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=888bp|location=Sequence derived from alignment at ScGOVlb_1622:975559..976446+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCGAGAATCTACTTTTGGCTGCTTTTGGCATGCCTGGCGTGGCA
TTCGCCCAGGGCGGTGGTATGCGGGTCCTTGGCCTCACAATCTATCACCT
CTTACATCGAAACATATTCTTCGGACGATGGTACCACTTCATACGGCGTT
TTGTCTTCCTCGAGCGCGTCCTCCTTGGAAGCATCTTCCAACGACGATGT
TGGGTCATTCGCTTCAAATGAGCCCCTTTCAGCCGAAAGTGCGTCACCCG
TAAAGAAGCCGACACAAACCAACGGACCCCCACGAAGACGCCGCTTCCGC
CGCAGCCGAGCACAATTGCGCGCCAAGGTGGACGCCGCCATGGCGGTCAC
GCGAGGCAGCAAGTGTAACCCCAACGTGTGCTTTGTGATGGACGGCAGCG
CGCGTCTTTCAGACGACGACTTTCGCCAACAAAAAGACTTTGTGAAGCTG
GTGGCGGCCATCGTAGCTTTTGATGAGGGCGCAGGATTAGCGGCCGTGAG
CTATTCGCGGCGCGTCACGCGACTGGCGGCACTCACCAGTGACGCCGACT
CGTTTCTGCTGCGCATGGAAAGTGCATGCCGACAGTGCCCTTGCTCAATG
AGGCCGTTGGTGGGAAGTGGAATTCGAATGTGCGATAGAGAGCTGAAAAA
GGCGAGCGGGGCGAAAAAGATGGTTGTGTTTGGCGATGATCAGAACACCA
CAACTCGGCGCGTGGCTAAACGGTTCCTGGCGCAGGAAGGTACGGGGCTT
TGCACGGTACAGGTTGGCGGGACGACTGCGGCGGACGGCGGGGAGTCAGA
CGTGCTGACTATTGACAGTTGGTCTGAGATCGTTGACATCTTAGAGGAGC
TGGTTCGCGCATTGTGTGATGCGCCGCAGGGGTTCTGA
back to top