Gvermi6789.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6789.t1
Unique NameGvermi6789.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2305410..2306951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6789Gvermi6789Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2304744..2306951 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1.start1Gvermi6789.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2305410..2305412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1.CDS1Gvermi6789.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2305410..2306951 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1.exon1Gvermi6789.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2305410..2306951 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1.stop1Gvermi6789.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2306949..2306951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1Gvermi6789.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2305410..2306951 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
LHTNAIIQAKQKQLRRPPQKSVAKTTIRTSPKGAGKGKSPAAYPFKTAVH
PAAHAGAHVGAHVGAHVGAHTGAHAGVHAGIRPGGNVQISFAPVQLQAQL
PAKRILENNTSSSPSNTAKKVKTAPKVSKTTTSKKKPSPAVANSLLSKGA
RPPILKPDQRNKGAKRPMPSGALPPAGPTPMAPGNPNADVVQKKVRRQVD
LKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRK
KMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEK
GQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVA
GEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDR
RRRRASAKPLAPLKPLGKSGLPPLARRPNSDGSGRSGLKPLGSLDRLKDL
GPLVKLGGKSNSPAPRGLGRDPVAAQVRLRVTLMDCVFLFESERNTKKSS
LLYKWYARLPNGK*
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spliced messenger RNA

>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_88:2305410..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCATACTAATGCTATCATTCAAGCAAAGCAAAAACAGCTCAGAAGGCC
TCCGCAGAAGAGCGTCGCAAAGACAACTATTCGAACGTCGCCGAAGGGGG
CAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTTTAAAACTGCAGTTCAT
CCTGCAGCTCACGCTGGAGCACATGTTGGAGCGCATGTTGGAGCGCATGT
TGGAGCACACACTGGGGCACACGCTGGAGTTCATGCCGGAATTCGTCCCG
GAGGAAATGTTCAGATATCTTTTGCACCTGTTCAACTTCAAGCGCAGCTT
CCTGCCAAGCGAATTCTAGAAAATAACACATCCTCATCCCCGTCGAATAC
AGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCGAAGACCACTACGAGCA
AGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTTGTTGTCGAAGGGAGCA
AGGCCCCCCATCTTGAAACCAGATCAGAGGAATAAAGGTGCGAAGAGGCC
TATGCCATCTGGAGCACTGCCGCCTGCTGGGCCTACGCCGATGGCGCCGG
GAAATCCGAACGCAGATGTAGTGCAGAAAAAAGTGCGTCGCCAAGTGGAT
TTGAAGGAAATCAACCTCGTTGACAACGTGGTGGATATTGAAGATGAGGA
GGTAAAACTGAATGTGGACGCCAACGGAAAACGACAAGCAGTCGAGGAAG
TGGTCCAATACAGTCCAGACATGATTGTTTCTGGTCCTGTTCTCCGTAAG
AAGATGCAGTCTATCGCCAAAAGACATGGAATTCATGAGAACGTTAACAA
AGAAGCGATGGAAATTATGTCTCTTGCAGTTCGAGAGCGTTTAGCATGCA
TATTAGAGTCGCTGAAGACGATAGCATCGGTGAGGGTGGGTGCCGAAAAA
GGACAATGGGGAAGAGTTGAAACGGGGTTGAATGTACGCGAAAAGCTGAA
AAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAAGTTGCCGCTGAAATGA
GAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGACGCAAGAAGAGTCGCG
GGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGGATTCGAGTGCAGCGGC
GGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAAAAGAAAAGAAAGGAAA
GTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGTTCGCGACTTCGACAGA
CGACGTCGCCGTGCATCAGCGAAACCGCTTGCTCCGCTCAAGCCCCTCGG
GAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCGAATTCCGACGGCTCAG
GAAGATCTGGCCTGAAACCATTAGGATCGCTCGACAGGCTTAAGGATTTG
GGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACAGTCCTGCCCCTCGTGG
ACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGACTACGCGTGACGCTTA
TGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAACACTAAGAAGAGTTCT
CTGCTGTACAAGTGGTACGCTCGGCTTCCCAACGGGAAATGA
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protein sequence of Gvermi6789.t1

>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
LHTNAIIQAKQKQLRRPPQKSVAKTTIRTSPKGAGKGKSPAAYPFKTAVH
PAAHAGAHVGAHVGAHVGAHTGAHAGVHAGIRPGGNVQISFAPVQLQAQL
PAKRILENNTSSSPSNTAKKVKTAPKVSKTTTSKKKPSPAVANSLLSKGA
RPPILKPDQRNKGAKRPMPSGALPPAGPTPMAPGNPNADVVQKKVRRQVD
LKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRK
KMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEK
GQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVA
GEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDR
RRRRASAKPLAPLKPLGKSGLPPLARRPNSDGSGRSGLKPLGSLDRLKDL
GPLVKLGGKSNSPAPRGLGRDPVAAQVRLRVTLMDCVFLFESERNTKKSS
LLYKWYARLPNGK*
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mRNA from alignment at ScGOVlb_88:2305410..2306951+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_88:2305410..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCATACTAATGCTATCATTCAAGCAAAGCAAAAACAGCTCAGAAGGCC
TCCGCAGAAGAGCGTCGCAAAGACAACTATTCGAACGTCGCCGAAGGGGG
CAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTTTAAAACTGCAGTTCAT
CCTGCAGCTCACGCTGGAGCACATGTTGGAGCGCATGTTGGAGCGCATGT
TGGAGCACACACTGGGGCACACGCTGGAGTTCATGCCGGAATTCGTCCCG
GAGGAAATGTTCAGATATCTTTTGCACCTGTTCAACTTCAAGCGCAGCTT
CCTGCCAAGCGAATTCTAGAAAATAACACATCCTCATCCCCGTCGAATAC
AGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCGAAGACCACTACGAGCA
AGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTTGTTGTCGAAGGGAGCA
AGGCCCCCCATCTTGAAACCAGATCAGAGGAATAAAGGTGCGAAGAGGCC
TATGCCATCTGGAGCACTGCCGCCTGCTGGGCCTACGCCGATGGCGCCGG
GAAATCCGAACGCAGATGTAGTGCAGAAAAAAGTGCGTCGCCAAGTGGAT
TTGAAGGAAATCAACCTCGTTGACAACGTGGTGGATATTGAAGATGAGGA
GGTAAAACTGAATGTGGACGCCAACGGAAAACGACAAGCAGTCGAGGAAG
TGGTCCAATACAGTCCAGACATGATTGTTTCTGGTCCTGTTCTCCGTAAG
AAGATGCAGTCTATCGCCAAAAGACATGGAATTCATGAGAACGTTAACAA
AGAAGCGATGGAAATTATGTCTCTTGCAGTTCGAGAGCGTTTAGCATGCA
TATTAGAGTCGCTGAAGACGATAGCATCGGTGAGGGTGGGTGCCGAAAAA
GGACAATGGGGAAGAGTTGAAACGGGGTTGAATGTACGCGAAAAGCTGAA
AAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAAGTTGCCGCTGAAATGA
GAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGACGCAAGAAGAGTCGCG
GGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGGATTCGAGTGCAGCGGC
GGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAAAAGAAAAGAAAGGAAA
GTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGTTCGCGACTTCGACAGA
CGACGTCGCCGTGCATCAGCGAAACCGCTTGCTCCGCTCAAGCCCCTCGG
GAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCGAATTCCGACGGCTCAG
GAAGATCTGGCCTGAAACCATTAGGATCGCTCGACAGGCTTAAGGATTTG
GGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACAGTCCTGCCCCTCGTGG
ACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGACTACGCGTGACGCTTA
TGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAACACTAAGAAGAGTTCT
CTGCTGTACAAGTGGTACGCTCGGCTTCCCAACGGGAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2305410..2306951+

>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_88:2305410..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCATACTAATGCTATCATTCAAGCAAAGCAAAAACAGCTCAGAAGGCC
TCCGCAGAAGAGCGTCGCAAAGACAACTATTCGAACGTCGCCGAAGGGGG
CAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTTTAAAACTGCAGTTCAT
CCTGCAGCTCACGCTGGAGCACATGTTGGAGCGCATGTTGGAGCGCATGT
TGGAGCACACACTGGGGCACACGCTGGAGTTCATGCCGGAATTCGTCCCG
GAGGAAATGTTCAGATATCTTTTGCACCTGTTCAACTTCAAGCGCAGCTT
CCTGCCAAGCGAATTCTAGAAAATAACACATCCTCATCCCCGTCGAATAC
AGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCGAAGACCACTACGAGCA
AGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTTGTTGTCGAAGGGAGCA
AGGCCCCCCATCTTGAAACCAGATCAGAGGAATAAAGGTGCGAAGAGGCC
TATGCCATCTGGAGCACTGCCGCCTGCTGGGCCTACGCCGATGGCGCCGG
GAAATCCGAACGCAGATGTAGTGCAGAAAAAAGTGCGTCGCCAAGTGGAT
TTGAAGGAAATCAACCTCGTTGACAACGTGGTGGATATTGAAGATGAGGA
GGTAAAACTGAATGTGGACGCCAACGGAAAACGACAAGCAGTCGAGGAAG
TGGTCCAATACAGTCCAGACATGATTGTTTCTGGTCCTGTTCTCCGTAAG
AAGATGCAGTCTATCGCCAAAAGACATGGAATTCATGAGAACGTTAACAA
AGAAGCGATGGAAATTATGTCTCTTGCAGTTCGAGAGCGTTTAGCATGCA
TATTAGAGTCGCTGAAGACGATAGCATCGGTGAGGGTGGGTGCCGAAAAA
GGACAATGGGGAAGAGTTGAAACGGGGTTGAATGTACGCGAAAAGCTGAA
AAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAAGTTGCCGCTGAAATGA
GAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGACGCAAGAAGAGTCGCG
GGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGGATTCGAGTGCAGCGGC
GGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAAAAGAAAAGAAAGGAAA
GTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGTTCGCGACTTCGACAGA
CGACGTCGCCGTGCATCAGCGAAACCGCTTGCTCCGCTCAAGCCCCTCGG
GAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCGAATTCCGACGGCTCAG
GAAGATCTGGCCTGAAACCATTAGGATCGCTCGACAGGCTTAAGGATTTG
GGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACAGTCCTGCCCCTCGTGG
ACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGACTACGCGTGACGCTTA
TGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAACACTAAGAAGAGTTCT
CTGCTGTACAAGTGGTACGCTCGGCTTCCCAACGGGAAATGA
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