Gvermi6789.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6789.t1
Unique NameGvermi6789.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Homology
BLAST of Gvermi6789.t1 vs. uniprot
Match: A0A2V3IXL1_9FLOR (TAF4 domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXL1_9FLOR)

HSP 1 Score: 380 bits (976), Expect = 3.390e-118
Identity = 244/430 (56.74%), Postives = 283/430 (65.81%), Query Frame = 0
Query:   86 NVQISFAPVQLQAQLPAKRILENNTSSSPSNTAKKVKTAPKVSKTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPMPSGA-LPPAGPTPMAPGNPNADVV-QKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRRASAKPLAPLKPLGK-SGLPPLARRPNSDGSGRSGLKPLGSLDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAAQVRLRVTLMDCVFLFESERNTKKSSLLYKWYARLPNG 512
            N+Q+ +     Q+ LP KR+L+N +SSSP N  K+ K APK SK                                    RP   GA L  +G    APG    D   QKKVRR  DLKEINLVDNVVDIEDEEVKL VDA+GK Q VE+VVQYS DMI++GP LRKKM +IAKR  + E   KEAME+MSLAVRERLA ILESLK IA+ R+ + K QWG V TG+N+REKL+R R+DEERALQVAAEMRV+RRKE                                 KLALEKK KESSSQRDA+SGL+R+FDRRRRRA AKPLAPLKPL K  GLPP+ +RPNS+  GR GLKPLGSLD LK  GPL KL G+SNS  PRGLG+ PV   V+LRVTL DC+FLFES+RNT+KS+L++KWYARL  G
Sbjct:  562 NLQVGYH-AHAQSHLPGKRVLDNASSSSPPNALKRAKPAPKPSKAPLGKKKPAAAVGNPGPGKGARPPVPKLDPKNRAGKRPAAPGAGLVHSGGASTAPGVQVLDGAGQKKVRRHEDLKEINLVDNVVDIEDEEVKLKVDASGKPQTVEDVVQYSSDMILAGPRLRKKMGTIAKRTDMTEGFTKEAMEVMSLAVRERLASILESLKPIATSRLDSAKEQWGTVATGMNIREKLERMRQDEERALQVAAEMRVKRRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLALEKKXKESSSQRDAMSGLIREFDRRRRRA-AKPLAPLKPLSKPGGLPPIPKRPNSESFGRPGLKPLGSLDSLKAAGPLFKL-GRSNSAVPRGLGKAPVQTNVKLRVTLRDCLFLFESDRNTRKSTLIHKWYARLQCG 988          
BLAST of Gvermi6789.t1 vs. uniprot
Match: R7Q6Z9_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6Z9_CHOCR)

HSP 1 Score: 243 bits (621), Expect = 1.370e-67
Identity = 171/359 (47.63%), Postives = 221/359 (61.56%), Query Frame = 0
Query:  177 GPTPMAPGNPNADVVQKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRR-ASAKPLAPLKPL----GKSG--------LPPLARRPNSDGSGRSGLKPLGS-------LDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAA------QVRLRVTLMDCVFLFESERNTKKSSLLYKWYARL 509
            G +  APG        +K +R  D  E+NLV++VVD++DE  KL  DA      V E++ Y P M++SGP LR KMQ  AKR+ + EN++K+AMEI+SLAV+ERL  +LESLK IA VR+ A K  W     G NV EKL+  REDEER+L VAAE+RV+R+KEQ E +A+++AGEA                  KEK+ALEKKRKE+SSQRDALSGLV   D+RR++ A+ K LA L PL     KSG        LPP+ +  +S G      K +G+       L++LK L PLV LGG   S  P   G +P A       Q +L +TL DC+FL ESE+NT+KSS +YKWYARL
Sbjct:  555 GSSNSAPGGTGPGTQVRKAKRVDD--ELNLVNDVVDLDDEVDKLGEDAGVVNTEVIEIIDYDPGMLLSGPALRTKMQVTAKRYALSENISKDAMEIVSLAVQERLRNLLESLKGIARVRIEANKESWNTEYFGQNVHEKLELMREDEERSLTVAAELRVKRKKEQEEREAKKLAGEAXXXXXXXXXXXXXXXXXXKEKIALEKKRKENSSQRDALSGLVAGIDKRRKKPATGKGLAGLAPLLPPITKSGGSRTSGSSLPPIPKLVSSAGGDSMSNKSVGTNGKKIDQLEKLKALCPLVSLGGPRTSSMP---GTEPSAKKDVPKPQPKLPLTLRDCIFLMESEQNTRKSSHIYKWYARL 908          
BLAST of Gvermi6789.t1 vs. uniprot
Match: R7QKK4_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK4_CHOCR)

HSP 1 Score: 145 bits (366), Expect = 2.570e-33
Identity = 128/327 (39.14%), Postives = 190/327 (58.10%), Query Frame = 0
Query:  206 LVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVA----GEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDRRRRRA-------SAKPLAPL-KPLGK-----SGLPPLARRPNSDGSGRSGLKPLGSLDRLKDLGPLVKLGGK---SNSPAPRGLGRDPVAAQVRLR---VTLMDCVFLFESERNTKKSSLLYKWYARL 509
            L+ NVVD++ EE  L  D         E V Y+  ++++   L K++++ A+R+ + E+V+++AMEI+SLAV ERL  ILESLK  +SVRV A+K  W        VREKL R  E+EER+L   A++R++++KE  + +A RV+    GE  +NDK+ R    A++A RK ++A EK  + S++ + ALSG++    + RR+A       S+K L PL K  GK     S LPPL  R  S G  +     L   DR  +   L+K+GG    + S  P+G+    VA + + R   +TL DC+FL ESE+ T++S  LYKWY RL
Sbjct:  707 LLGNVVDLDYEESFLAHDEKTAGDGDMEAVGYNDGLLLTANALGKRIKAAARRNHLKESVSRDAMEIISLAVCERLKSILESLKVASSVRVDADKDLWTTAVPDETVREKLGRLFEEEERSLDEKAKLRLKKKKELADIEAMRVSKMVIGE--ENDKTPR--LVASKAGRKARIAREKSLETSNNHKKALSGVLAGIQKMRRKANFEKPLGSSKALLPLIKGSGKLQNITSILPPLPTRNVSGGIIQRRTDELDRTDRKHE--GLLKMGGPETTNRSHLPKGI----VAVRRKKRKYGLTLKDCLFLMESEQTTRRSYALYKWYGRL 1023          
BLAST of Gvermi6789.t1 vs. uniprot
Match: A0A5J4YTN7_PORPP (TAF4 domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTN7_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 1.770e-7
Identity = 108/396 (27.27%), Postives = 172/396 (43.43%), Query Frame = 0
Query:  169 PSGALP-----PAGPTPM----APGNPNADVVQKKVRRQV--DLKEINLVDNV-VDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEKGQWGRVETGL---NVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALEKKRK-ESSSQRDA-LSGLVRDFDRRRRRASAKPLAPL------KPLGKSGLPPLARRPNSDGSGRSGLKP-----LGSLDRLKDLGPLVKLGGKSN--------------------SPAPRGLG-------RDPVAAQVRLRVTLMDCVFLFESERNTKKSSLLYKWYARL 509
            P G++P     P+G + M    + G   A V QKK  R+   + +E++++    +D+E+E+  + VD +   Q   E+       +V+   + K M+ + +R      V +E +EI+SLAVRERL  +LE L  I++ R    +  WG   T     +VR +L + R++E R L V  E R RR++E   A+   V  E    D++ R    A  AE K    +EKKR+ ES  Q +A L+ ++    +RR+ A +    P         LG   + P A     DG+   G  P      GS   + D      +  K                      +  P GLG         P     R  +++ DC+FL E +R+  KS+ L     +L
Sbjct:  611 PDGSMPGQPHLPSGTSGMVKLHSTGASAAPVAQKKAERKARTEDEELDVMYAAGIDVENEDEDVFVDEDEHTQG--ELEPEDVGKLVNSGSVEKIMERVVRRTRGVRQVRRECVEILSLAVRERLQSLLERLNQISNARQEVSRKLWGAKATTYAVKDVRGELDKLRKEEVRQLDVLMEGRKRRQQELEAAENGGVIPE----DRTPRPDDNAKRAENK--AVIEKKRQDESLKQTNATLTNILGGLKKRRKSAPSAGAPPSLAAGGSSSLGAGSVAPAAGSVGGDGN--DGKPPRLFSDAGSTGAMSDDSATASVHNKITDGEASVGSRDAAQPPLLPVRATVPAGLGGPLPLRQTQPQLQMQRDPISIRDCIFLMERDRHMNKSARLMLMMCKL 996          
The following BLAST results are available for this feature:
BLAST of Gvermi6789.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IXL1_9FLOR3.390e-11856.74TAF4 domain-containing protein n=2 Tax=Gracilariop... [more]
R7Q6Z9_CHOCR1.370e-6747.63TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7QKK4_CHOCR2.570e-3339.14TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4YTN7_PORPP1.770e-727.27TAF4 domain-containing protein n=1 Tax=Porphyridiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 313..333
NoneNo IPR availableCOILSCoilCoilcoord: 367..387
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..444
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..28
NoneNo IPR availablePANTHERPTHR15138:SF14IP01149P-RELATEDcoord: 10..508
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 243..290
e-value: 7.8E-7
score: 30.8
IPR007900Transcription initiation factor TFIID component TAF4, C-terminalPFAMPF05236TAF4coord: 211..504
e-value: 2.2E-16
score: 60.5
IPR045144Transcription initiation factor TFIID component TAF4PANTHERPTHR15138TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4coord: 10..508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2305410..2306951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6789.t1Gvermi6789.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2305410..2306951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6789.t1 ID=Gvermi6789.t1|Name=Gvermi6789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
LHTNAIIQAKQKQLRRPPQKSVAKTTIRTSPKGAGKGKSPAAYPFKTAVH
PAAHAGAHVGAHVGAHVGAHTGAHAGVHAGIRPGGNVQISFAPVQLQAQL
PAKRILENNTSSSPSNTAKKVKTAPKVSKTTTSKKKPSPAVANSLLSKGA
RPPILKPDQRNKGAKRPMPSGALPPAGPTPMAPGNPNADVVQKKVRRQVD
LKEINLVDNVVDIEDEEVKLNVDANGKRQAVEEVVQYSPDMIVSGPVLRK
KMQSIAKRHGIHENVNKEAMEIMSLAVRERLACILESLKTIASVRVGAEK
GQWGRVETGLNVREKLKRAREDEERALQVAAEMRVRRRKEQREADARRVA
GEAAKNDKSARDSSAAAEAERKEKLALEKKRKESSSQRDALSGLVRDFDR
RRRRASAKPLAPLKPLGKSGLPPLARRPNSDGSGRSGLKPLGSLDRLKDL
GPLVKLGGKSNSPAPRGLGRDPVAAQVRLRVTLMDCVFLFESERNTKKSS
LLYKWYARLPNGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007900TAF4_C
IPR045144TAF4