Gvermi6761.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6761.t1
Unique NameGvermi6761.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2180626..2181272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706707.1
PFAMsCP12
Max annot lvl2759|Eukaryota
Evalue7.01e-26
EggNOG OGs2DAQB@1|root,2SCXW@2759|Eukaryota
DescriptionCP12
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6761Gvermi6761Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2180626..2181272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1Gvermi6761.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2180626..2181272 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1.start1Gvermi6761.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2180626..2180628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1.CDS1Gvermi6761.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2180626..2180685 +
Gvermi6761.t1.CDS2Gvermi6761.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2180982..2181272 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1.exon1Gvermi6761.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2180626..2180685 +
Gvermi6761.t1.exon2Gvermi6761.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2180982..2181272 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1.intron1Gvermi6761.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2180686..2180981 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1.stop1Gvermi6761.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2181270..2181272 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=117bp
MAFVSSLSLSARVRAPALAKCPAFRPAAPAAAAARRAAARMNLETIQQKI
QEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQ
FCEDSPEADECRVYDN*
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spliced messenger RNA

>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=351bp|location=Sequence derived from alignment at ScGOVlb_88:2180626..2181272+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTGtcgtcgctgtcgctgtccgcgcgcgtgcgcgcgcccgc
gctcgcaaagtgccccgcgttccgccccgccgcgcccgctgcggcggcgg
cgcggcgcgccgcggcgcgcATGAACCTGGAAACCATCCAGCAGAAGATC
CAGGAGGAGATGAAGAAGGCCGAGCAGGCCACGCAGCAGTTTGGGCGCGA
CTCCAAGGAGGCGGCGCTGGCGTGGGACGTGGTGGAGGAGCTGGAGGCCG
AGGCGTCGCACATGAAGGTGCAGAAGGGCAAGCCCGACCCGCTGGAGCAG
TTCTGCGAGGACTCGCCCGAGGCCGACGAGTGCCGCGTGTACGACAACTA
G
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protein sequence of Gvermi6761.t1

>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=117bp
MAFVSSLSLSARVRAPALAKCPAFRPAAPAAAAARRAAARMNLETIQQKI
QEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQ
FCEDSPEADECRVYDN*
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mRNA from alignment at ScGOVlb_88:2180626..2181272+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=647bp|location=Sequence derived from alignment at ScGOVlb_88:2180626..2181272+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTTGTGtcgtcgctgtcgctgtccgcgcgcgtgcgcgcgcccgc
gctcgcaaaggtaagccgcgcccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccGGCGTTTGTGTCGTGGCTGTCCCGGCCCCGG
CGGGGCCGCGCGCCGGCGCTCGCAAGGGTAGGccgccccccccccccccc
cccgtctccgcgccgccgcgccgccgcccagcgctgaccgccGcccgcgc
cccgcgccccgcgccccgcgccccgcgccccgcgccccgcgctccgcCGc
gcgcagtgccccgcgttccgccccgccgcgcccgctgcggcggcggcgcg
gcgcgccgcggcgcgcATGAACCTGGAAACCATCCAGCAGAAGATCCAGG
AGGAGATGAAGAAGGCCGAGCAGGCCACGCAGCAGTTTGGGCGCGACTCC
AAGGAGGCGGCGCTGGCGTGGGACGTGGTGGAGGAGCTGGAGGCCGAGGC
GTCGCACATGAAGGTGCAGAAGGGCAAGCCCGACCCGCTGGAGCAGTTCT
GCGAGGACTCGCCCGAGGCCGACGAGTGCCGCGTGTACGACAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2180626..2181272+

>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=351bp|location=Sequence derived from alignment at ScGOVlb_88:2180626..2181272+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTTGTGtcgtcgctgtcgctgtccgcgcgcgtgcgcgcgcccgc
gctcgcaaagtgccccgcgttccgccccgccgcgcccgctgcggcggcgg
cgcggcgcgccgcggcgcgcATGAACCTGGAAACCATCCAGCAGAAGATC
CAGGAGGAGATGAAGAAGGCCGAGCAGGCCACGCAGCAGTTTGGGCGCGA
CTCCAAGGAGGCGGCGCTGGCGTGGGACGTGGTGGAGGAGCTGGAGGCCG
AGGCGTCGCACATGAAGGTGCAGAAGGGCAAGCCCGACCCGCTGGAGCAG
TTCTGCGAGGACTCGCCCGAGGCCGACGAGTGCCGCGTGTACGACAACTA
G
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