Gvermi6761.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6761.t1
Unique NameGvermi6761.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length117
Homology
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A2V3J4Z2_9FLOR (Calvin cycle protein CP12, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Z2_9FLOR)

HSP 1 Score: 134 bits (338), Expect = 1.190e-38
Identity = 72/116 (62.07%), Postives = 88/116 (75.86%), Query Frame = 0
Query:    1 MAFVSSLSLSARVRAPALAKCPAFRPAAPAXXXXXXXXARMNLETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            MAFV+S+S+++R    +  KC +FR               MNL+TIQ KIQEE+KKAE AT QFG+ SKEAALAWD+VEELEAEASHMK +KG PDPLE++CED+P+ADECRVYDN
Sbjct:    1 MAFVNSVSVASRAPVFSPLKCSSFRGVQFRVASTPRPALLMNLDTIQTKIQEEIKKAEAATAQFGKSSKEAALAWDIVEELEAEASHMKAKKGTPDPLEEYCEDAPDADECRVYDN 116          
BLAST of Gvermi6761.t1 vs. uniprot
Match: R7Q2J1_CHOCR (CP12 protein, chloroplast, involves in the regulation of CO2 assimilation (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2J1_CHOCR)

HSP 1 Score: 122 bits (307), Expect = 9.350e-34
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 0
Query:    1 MAFVSSLSLSARVRA--PALA--KCPAFRPAAPAXXXXXXXXARMNLETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            MAFVSS+S++ R  +  PA++  K  + R   P           MNL+TIQ KIQEEMKKA+ ATQQFG+ SKEAALAWDVVEELEAEASH+K  KG  DPLE+FCE+SPEADECRVY++
Sbjct:   15 MAFVSSVSVAVRPASVTPAVSSFKGSSLRWTTP----KPRVALSMNLDTIQVKIQEEMKKAQDATQQFGKGSKEAALAWDVVEELEAEASHLKANKGSNDPLEKFCEESPEADECRVYED 130          
BLAST of Gvermi6761.t1 vs. uniprot
Match: Q2PC90_GALSU (Small chloroplast protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q2PC90_GALSU)

HSP 1 Score: 100 bits (249), Expect = 5.710e-25
Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 0
Query:   48 QKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            Q+IQE +KKAE+AT++FGRDSKEAA AWD VEEL+AEASH +V++ K DPLE FC++SPEA+ECRVYDN
Sbjct:   62 QQIQESIKKAEEATKKFGRDSKEAAAAWDAVEELDAEASHQRVRQ-KTDPLETFCDESPEAEECRVYDN 129          
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A5J4YIM3_PORPP (Calvin cycle protein CP12, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIM3_PORPP)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-23
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 0
Query:   49 KIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            KI + +K AE+AT +FG+ SKEAA+AWD VEELEAEASH K    K DPLE++C+D+PEADECR YDN
Sbjct:   16 KISDAIKGAEEATSKFGKGSKEAAVAWDTVEELEAEASHQKASNAKKDPLEEYCDDAPEADECRTYDN 83          
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A7S1TPK3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TPK3_9RHOD)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-23
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0
Query:   43 LETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            +  +Q KI   MK+AE+AT+ +G+ SKEAA+AWD VEELEAEASH K  + K DPLE +CED+PEADECR YDN
Sbjct:   36 MSDLQGKINAAMKEAEEATKTYGKTSKEAAVAWDTVEELEAEASHQKSAEVKKDPLEAYCEDAPEADECRTYDN 109          
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A1X6NM38_PORUM (CP12 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM38_PORUM)

HSP 1 Score: 91.3 bits (225), Expect = 1.720e-21
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 0
Query:    3 FVSSLSLSARVRAPALAKCPAFRPAAPAXXXXXXXXARMNLETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            FVS ++  +  R    A C     A  A        A M +  IQ+ IQ E+ KA++A+ +FG+ SKEAA AWD VEELEAEASH K  + K DPLE +CED PEADECR Y++
Sbjct:    4 FVSGVAAVSSARRAPSAVCTRSSFAGAAVVAAPVVRATMRMSNIQETIQTEIAKAKEASDKFGKTSKEAAAAWDAVEELEAEASHQKNAE-KKDPLEAYCEDVPEADECRTYED 116          
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A7J7IC32_9RHOD (CP12 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IC32_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 2.250e-20
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   40 RMNLETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            RM  E++  +I E +K AE A +++G+ SKEA +AWDVVEELEAE SH   Q+   DPLEQ+C++ PEADECRVY++
Sbjct:   45 RMASESMNTRIDEAIKNAEDAARKYGKGSKEAKVAWDVVEELEAERSHQAAQRQSEDPLEQYCKEVPEADECRVYED 121          
BLAST of Gvermi6761.t1 vs. uniprot
Match: M1V6V0_CYAM1 (CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V6V0_CYAM1)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   40 RMNLETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            RM  E +  +IQE +K AE A +++G+ SKEA +AWD VEELEAE SH    K   DPLE++C + PEADECRVY++
Sbjct:   46 RMANEKLNTQIQEAIKNAEDAAKKYGKASKEAKVAWDFVEELEAERSHQAANKQSEDPLEKYCNEVPEADECRVYED 122          
BLAST of Gvermi6761.t1 vs. uniprot
Match: K9SFT8_9CYAN (CP12 domain-containing protein n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SFT8_9CYAN)

HSP 1 Score: 82.8 bits (203), Expect = 1.150e-18
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0
Query:   43 LETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            +  IQ KIQEE++ A +A    G DSKE A AWD VEEL+AEASH + +K K + LEQFC+D+P+A ECRVYD+
Sbjct:    1 MSNIQNKIQEELESAREACDTTGADSKECAAAWDAVEELQAEASHQREEKPK-NSLEQFCDDNPDAAECRVYDD 73          
BLAST of Gvermi6761.t1 vs. uniprot
Match: A0A846AAI2_9CYAN (CP12 domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846AAI2_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 4.770e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   43 LETIQQKIQEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQFCEDSPEADECRVYDN 116
            +  IQ +I++E ++A  A Q+ G DS E A+AWD VEEL+AEASH +  + K    E++CED+P+ADECR+YDN
Sbjct:    1 MSDIQSQIEQERERARTACQETGDDSAECAVAWDTVEELQAEASHQRSSQKKKTSFEEYCEDNPDADECRIYDN 74          
The following BLAST results are available for this feature:
BLAST of Gvermi6761.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4Z2_9FLOR1.190e-3862.07Calvin cycle protein CP12, chloroplastic n=1 Tax=G... [more]
R7Q2J1_CHOCR9.350e-3461.67CP12 protein, chloroplast, involves in the regulat... [more]
Q2PC90_GALSU5.710e-2572.46Small chloroplast protein n=1 Tax=Galdieria sulphu... [more]
A0A5J4YIM3_PORPP1.040e-2366.18Calvin cycle protein CP12, chloroplastic n=1 Tax=P... [more]
A0A7S1TPK3_9RHOD3.050e-2363.51Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6NM38_PORUM1.720e-2148.25CP12 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7J7IC32_9RHOD2.250e-2055.84CP12 domain-containing protein n=1 Tax=Cyanidiococ... [more]
M1V6V0_CYAM11.060e-1854.55CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon ... [more]
K9SFT8_9CYAN1.150e-1858.11CP12 domain-containing protein n=1 Tax=Pseudanabae... [more]
A0A846AAI2_9CYAN4.770e-1851.35CP12 domain-containing protein n=1 Tax=Leptolyngby... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..63
NoneNo IPR availablePFAMPF02672CP12coord: 46..115
e-value: 4.1E-26
score: 91.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..106
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
IPR003823CP12 domainSMARTSM01093CP12_2coord: 46..116
e-value: 5.3E-29
score: 112.4
IPR039314Calvin cycle protein CP12-likePANTHERPTHR33921CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 34..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2180626..2181272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6761.t1Gvermi6761.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2180626..2181272 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6761.t1 ID=Gvermi6761.t1|Name=Gvermi6761.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=117bp
MAFVSSLSLSARVRAPALAKCPAFRPAAPAAAAARRAAARMNLETIQQKI
QEEMKKAEQATQQFGRDSKEAALAWDVVEELEAEASHMKVQKGKPDPLEQ
FCEDSPEADECRVYDN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003823CP12_dom
IPR039314CP12-like