Gvermi6719.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6719.t1
Unique NameGvermi6719.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2087044..2087468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6719Gvermi6719Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2087044..2087468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1Gvermi6719.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2087044..2087468 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1.start1Gvermi6719.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2087044..2087046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1.CDS1Gvermi6719.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2087044..2087364 +
Gvermi6719.t1.CDS2Gvermi6719.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2087451..2087468 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1.exon1Gvermi6719.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2087044..2087364 +
Gvermi6719.t1.exon2Gvermi6719.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2087451..2087468 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1.intron1Gvermi6719.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2087365..2087450 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6719.t1.stop1Gvermi6719.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2087466..2087468 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6719.t1 ID=Gvermi6719.t1|Name=Gvermi6719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=113bp
MSGSADDVVNEKYPLYARNKAPFISFNGEEGFYLENKPVKQFAIVDKLTE
PLFDYSDPSEFQSVKPQPPSSISWPSGDGRGKAIQGTKGSFDQANIKEYG
PFPDFFKRSCDG*
back to top

spliced messenger RNA

>Gvermi6719.t1 ID=Gvermi6719.t1|Name=Gvermi6719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=339bp|location=Sequence derived from alignment at ScGOVlb_88:2087044..2087468+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGAAGCGCCGATGACGTTGTGAATGAGAAGTACCCGCTGTACGC
GCGCAACAAGGCACCATTCATAAGTTTCAATGGTGAGGAAGGGTTCTACT
TAGAAAACAAGCCCGTCAAGCAATTTGCTATCGTCGACAAATTGACTGAA
CCCCTGTTCGACTACTCAGATCCGTCTGAGTTTCAGTCTGTCAAACCGCA
GCCACCATCTTCTATCTCGTGGCCAAGTGGCGATGGGAGAGGAAAAGCTA
TTCAGGGAACTAAGGGAAGTTTTGATCAAGCGAATATAAAGGAATATGGC
CCATTCCCGGATTTCTTCAAGAGGTCTTGTGACGGCTAA
back to top

protein sequence of Gvermi6719.t1

>Gvermi6719.t1 ID=Gvermi6719.t1|Name=Gvermi6719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=113bp
MSGSADDVVNEKYPLYARNKAPFISFNGEEGFYLENKPVKQFAIVDKLTE
PLFDYSDPSEFQSVKPQPPSSISWPSGDGRGKAIQGTKGSFDQANIKEYG
PFPDFFKRSCDG*
back to top

mRNA from alignment at ScGOVlb_88:2087044..2087468+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6719.t1 ID=Gvermi6719.t1|Name=Gvermi6719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=425bp|location=Sequence derived from alignment at ScGOVlb_88:2087044..2087468+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGGAAGCGCCGATGACGTTGTGAATGAGAAGTACCCGCTGTACGC
GCGCAACAAGGCACCATTCATAAGTTTCAATGGTGAGGAAGGGTTCTACT
TAGAAAACAAGCCCGTCAAGCAATTTGCTATCGTCGACAAATTGACTGAA
CCCCTGTTCGACTACTCAGATCCGTCTGAGTTTCAGTCTGTCAAACCGCA
GCCACCATCTTCTATCTCGTGGCCAAGTGGCGATGGGAGAGGAAAAGCTA
TTCAGGGAACTAAGGGAAGTTTTGATCAAGCGAATATAAAGGAATATGGC
CCATTCCCGGATTTCTTCAAGGTGCGTGTGAATCTTCGTGTTGCACAACT
CGTCATGTTCACTATGTATTCTAACACTTTGTTTTATTGTTCTATGACTT
ATTGCAGAGGTCTTGTGACGGCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2087044..2087468+

>Gvermi6719.t1 ID=Gvermi6719.t1|Name=Gvermi6719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=339bp|location=Sequence derived from alignment at ScGOVlb_88:2087044..2087468+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGGAAGCGCCGATGACGTTGTGAATGAGAAGTACCCGCTGTACGC
GCGCAACAAGGCACCATTCATAAGTTTCAATGGTGAGGAAGGGTTCTACT
TAGAAAACAAGCCCGTCAAGCAATTTGCTATCGTCGACAAATTGACTGAA
CCCCTGTTCGACTACTCAGATCCGTCTGAGTTTCAGTCTGTCAAACCGCA
GCCACCATCTTCTATCTCGTGGCCAAGTGGCGATGGGAGAGGAAAAGCTA
TTCAGGGAACTAAGGGAAGTTTTGATCAAGCGAATATAAAGGAATATGGC
CCATTCCCGGATTTCTTCAAGAGGTCTTGTGACGGCTAA
back to top