Gvermi13797.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi13797.t1
Unique Name	Gvermi13797.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	474

Homology

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BLAST of Gvermi13797.t1 vs. uniprot
Match: A0A2V3J6Z8_9FLOR (Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Z8_9FLOR)

HSP 1 Score: 462 bits (1188), Expect = 3.350e-156
Identity = 238/458 (51.97%), Postives = 320/458 (69.87%), Query Frame = 0

Query:   17 ALRISMALDQNDNRNSLEYLRLLHDLSGTNPKAIIPILTGLTHFTVDLHSYPKHSPLHLLIRAALCIDMHAISPTEELSTLGLETFQNFLANLISANADYIDPIFNMIAKRVFTMSAAQDALLAAMHKIICHAIRTYPRSKHVLLSTLQKSYPHPVRPPVEHQAYARAILKLAKEESLAQSLLLTTIERVAAIEALVPRETIGTEN-GELCIEAERLELVLLEICNFFDNGGNFEPAFTAYQVFIVPLNTARFSPYFLIYAASLDSSNHMLHEAVERLWYSFHNPSTPMQLRERFLQHSTKIVMYATAYDSRWVRKWVLRLANWLNAYLDSSGGNSYSDPASHTTLTTAVSSLLHVLMKKPSTVTSTEFVNRMRLYRIISATSGSLKALPSLLVTSFFDLMRNNYDIDYKAMLSESSVWSYSTQSECASSYIYFHSDLFTNTMFPKLKAKLDNHVLWD 473
            AL+I +ALDQN NRN LE+LRLLH LSGTNP +I PILTGLTH TV+LH YP  SPLH L RAAL +D+HAISPT++     L+ F +FL NLISA+ADYI+P+F MI KR FTMSAA+D LL+AMH ++  A+ T+PR++ +LLST+Q SYPHPVRPP EH  +ARA L+LAKE  L  SLL+T  ERVAAIEALVP      ++  +L +EAERLE+VLLE+CNFF+ GG+ E AF+AYQ+FIVP++  R+SPY L++ A++      LH+ VERLW SFH+P TP +LRERFL+H+  +V+ A  Y+S  V +WV RLA WLNAY+D++ GN   D   H +  TAV+ LL V+ ++       E ++ MRLYRI+S+       LP  LV SF + + N   +DY+ ++ ES      +++   S   + +  +  +   P+L+A+L+ HVLWD
Sbjct:   17 ALKIHVALDQNANRNPLEFLRLLHALSGTNPHSITPILTGLTHHTVNLHLYPSTSPLHQLTRAALKLDLHAISPTDKTPNPALQAFVSFLTNLISAHADYIEPVFQMIVKRAFTMSAARDCLLSAMHSVVFSALHTHPRARSILLSTVQSSYPHPVRPPAEHLCFARATLRLAKEPHLVSSLLVTLFERVAAIEALVPHTVFANDSRSQLGMEAERLEVVLLELCNFFEEGGSVEAAFSAYQMFIVPMDAVRYSPYALLFGAAVAKDTSTLHDIVERLWQSFHDPCTPSRLRERFLEHAGSMVLRARCYNSDHVVRWVARLAGWLNAYIDAARGNDVIDVDIHLSFYTAVAVLLRVMTRRCEAFKDEEVLSNMRLYRIVSSGMNPFVVLPRALVDSFVETVMNTCGVDYRDVIVESEGVFPPSRTLYGSKNEFVYRIVCPDFELPRLRARLNAHVLWD 474

The following BLAST results are available for this feature:

BLAST of Gvermi13797.t1 vs. uniprot

BLAST of Gvermi13797.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J6Z8_9FLOR	3.350e-156	51.97	Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 93..210 e-value: 1.7E-11 score: 43.4
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 19..230
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 254..396
None	No IPR available	PANTHER	PTHR12790:SF0	RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATED	coord: 19..230
None	No IPR available	PANTHER	PTHR12790:SF0	RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATED	coord: 254..396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:96535..97956 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13797.t1	Gvermi13797.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_647 96535..97956 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MSIPSDADSRLQKSSDALRISMALDQNDNRNSLEYLRLLHDLSGTNPKAI
IPILTGLTHFTVDLHSYPKHSPLHLLIRAALCIDMHAISPTEELSTLGLE
TFQNFLANLISANADYIDPIFNMIAKRVFTMSAAQDALLAAMHKIICHAI
RTYPRSKHVLLSTLQKSYPHPVRPPVEHQAYARAILKLAKEESLAQSLLL
TTIERVAAIEALVPRETIGTENGELCIEAERLELVLLEICNFFDNGGNFE
PAFTAYQVFIVPLNTARFSPYFLIYAASLDSSNHMLHEAVERLWYSFHNP
STPMQLRERFLQHSTKIVMYATAYDSRWVRKWVLRLANWLNAYLDSSGGN
SYSDPASHTTLTTAVSSLLHVLMKKPSTVTSTEFVNRMRLYRIISATSGS
LKALPSLLVTSFFDLMRNNYDIDYKAMLSESSVWSYSTQSECASSYIYFH
SDLFTNTMFPKLKAKLDNHVLWD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007991	RNA_pol_I_trans_ini_fac_RRN3