Gvermi13797.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13797.t1
Unique NameGvermi13797.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:96535..97956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML00832a-PA
Preferred nameRRN3
PFAMsRRN3
Max annot lvl33208|Metazoa
KEGG koko:K15216
GOsGO:0000976,GO:0001013,GO:0001042,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001181,GO:0001188,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007028,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009303,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036099,GO:0042254,GO:0042592,GO:0042790,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0120035,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901797,GO:1902253,GO:1902254,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000112,GO:2000142,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue8.45e-06
EggNOG OGsKOG2434@1|root,KOG2434@2759|Eukaryota,38C7T@33154|Opisthokonta,3BD29@33208|Metazoa
DescriptionRNA polymerase I general transcription initiation factor activity
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13797Gvermi13797Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 96535..97956 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13797.t1.stop1Gvermi13797.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 96535..96537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13797.t1.CDS1Gvermi13797.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 96535..97956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13797.t1.exon1Gvermi13797.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 96535..97956 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13797.t1.start1Gvermi13797.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 97954..97956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13797.t1Gvermi13797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 96535..97956 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp
MSIPSDADSRLQKSSDALRISMALDQNDNRNSLEYLRLLHDLSGTNPKAI
IPILTGLTHFTVDLHSYPKHSPLHLLIRAALCIDMHAISPTEELSTLGLE
TFQNFLANLISANADYIDPIFNMIAKRVFTMSAAQDALLAAMHKIICHAI
RTYPRSKHVLLSTLQKSYPHPVRPPVEHQAYARAILKLAKEESLAQSLLL
TTIERVAAIEALVPRETIGTENGELCIEAERLELVLLEICNFFDNGGNFE
PAFTAYQVFIVPLNTARFSPYFLIYAASLDSSNHMLHEAVERLWYSFHNP
STPMQLRERFLQHSTKIVMYATAYDSRWVRKWVLRLANWLNAYLDSSGGN
SYSDPASHTTLTTAVSSLLHVLMKKPSTVTSTEFVNRMRLYRIISATSGS
LKALPSLLVTSFFDLMRNNYDIDYKAMLSESSVWSYSTQSECASSYIYFH
SDLFTNTMFPKLKAKLDNHVLWD*
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spliced messenger RNA

>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_647:96535..97956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATTCCTTCCGATGCGGACAGCCGTCTTCAAAAATCTTCAGACGC
GCTGCGAATAAGCATGGCACTAGACCAGAATGACAATCGTAACTCGCTAG
AGTATTTGCGTCTTCTGCACGACCTGTCCGGGACTAATCCGAAGGCCATA
ATACCGATTCTTACAGGGCTGACACATTTCACCGTGGACTTGCACTCGTA
TCCGAAACATTCTCCTTTGCATTTGCTCATACGTGCCGCTCTTTGCATAG
ATATGCATGCGATTAGTCCAACAGAAGAATTGTCAACTCTTGGTCTAGAA
ACCTTCCAGAATTTTCTTGCCAACCTGATTTCTGCAAATGCTGACTACAT
TGATCCCATTTTTAACATGATTGCCAAACGAGTATTTACCATGTCTGCAG
CACAAGATGCTCTTTTAGCTGCAATGCACAAAATCATATGTCATGCAATT
CGTACGTATCCTCGATCTAAACACGTGCTTCTTTCAACATTGCAAAAAAG
CTATCCACATCCAGTGAGACCACCCGTCGAACATCAAGCGTATGCAAGGG
CTATTTTAAAGCTAGCAAAAGAAGAAAGTCTTGCTCAGTCATTACTGCTG
ACAACAATAGAGAGAGTCGCAGCGATTGAAGCCTTGGTGCCTCGTGAAAC
AATAGGAACAGAAAATGGAGAACTTTGCATAGAAGCTGAACGTCTCGAGC
TCGTTCTACTCGAAATCTGCAATTTTTTTGATAATGGAGGAAATTTCGAA
CCAGCGTTCACTGCCTATCAAGTCTTCATTGTGCCTTTAAATACCGCACG
ATTTAGCCCATATTTTTTAATATATGCTGCATCACTGGACTCCTCCAATC
ATATGCTCCATGAAGCCGTAGAACGTCTCTGGTATTCATTTCATAATCCG
TCAACACCTATGCAGTTACGAGAGCGATTCCTGCAGCATTCAACTAAAAT
TGTGATGTACGCAACAGCTTACGACTCTCGTTGGGTCAGAAAATGGGTTT
TAAGGTTAGCAAATTGGTTGAACGCGTATTTGGATTCGTCTGGAGGAAAC
TCTTACAGTGATCCGGCCTCCCACACCACTTTAACAACTGCTGTTTCCTC
TCTCCTACATGTTTTGATGAAAAAACCAAGTACAGTGACTAGTACTGAGT
TCGTCAACCGCATGAGACTCTACCGAATAATCTCGGCCACTAGTGGTTCC
TTGAAGGCGCTTCCCAGCTTACTCGTTACGTCTTTCTTCGACTTAATGCG
AAACAATTATGACATCGACTATAAGGCAATGCTAAGTGAAAGCAGTGTCT
GGAGTTATTCAACTCAAAGTGAATGTGCGTCGAGTTACATTTACTTTCAT
TCCGATTTGTTTACAAATACAATGTTTCCGAAACTCAAAGCTAAGCTAGA
CAACCACGTGCTGTGGGACTAG
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protein sequence of Gvermi13797.t1

>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MSIPSDADSRLQKSSDALRISMALDQNDNRNSLEYLRLLHDLSGTNPKAI
IPILTGLTHFTVDLHSYPKHSPLHLLIRAALCIDMHAISPTEELSTLGLE
TFQNFLANLISANADYIDPIFNMIAKRVFTMSAAQDALLAAMHKIICHAI
RTYPRSKHVLLSTLQKSYPHPVRPPVEHQAYARAILKLAKEESLAQSLLL
TTIERVAAIEALVPRETIGTENGELCIEAERLELVLLEICNFFDNGGNFE
PAFTAYQVFIVPLNTARFSPYFLIYAASLDSSNHMLHEAVERLWYSFHNP
STPMQLRERFLQHSTKIVMYATAYDSRWVRKWVLRLANWLNAYLDSSGGN
SYSDPASHTTLTTAVSSLLHVLMKKPSTVTSTEFVNRMRLYRIISATSGS
LKALPSLLVTSFFDLMRNNYDIDYKAMLSESSVWSYSTQSECASSYIYFH
SDLFTNTMFPKLKAKLDNHVLWD*
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mRNA from alignment at ScGOVlb_647:96535..97956-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_647:96535..97956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATTCCTTCCGATGCGGACAGCCGTCTTCAAAAATCTTCAGACGC
GCTGCGAATAAGCATGGCACTAGACCAGAATGACAATCGTAACTCGCTAG
AGTATTTGCGTCTTCTGCACGACCTGTCCGGGACTAATCCGAAGGCCATA
ATACCGATTCTTACAGGGCTGACACATTTCACCGTGGACTTGCACTCGTA
TCCGAAACATTCTCCTTTGCATTTGCTCATACGTGCCGCTCTTTGCATAG
ATATGCATGCGATTAGTCCAACAGAAGAATTGTCAACTCTTGGTCTAGAA
ACCTTCCAGAATTTTCTTGCCAACCTGATTTCTGCAAATGCTGACTACAT
TGATCCCATTTTTAACATGATTGCCAAACGAGTATTTACCATGTCTGCAG
CACAAGATGCTCTTTTAGCTGCAATGCACAAAATCATATGTCATGCAATT
CGTACGTATCCTCGATCTAAACACGTGCTTCTTTCAACATTGCAAAAAAG
CTATCCACATCCAGTGAGACCACCCGTCGAACATCAAGCGTATGCAAGGG
CTATTTTAAAGCTAGCAAAAGAAGAAAGTCTTGCTCAGTCATTACTGCTG
ACAACAATAGAGAGAGTCGCAGCGATTGAAGCCTTGGTGCCTCGTGAAAC
AATAGGAACAGAAAATGGAGAACTTTGCATAGAAGCTGAACGTCTCGAGC
TCGTTCTACTCGAAATCTGCAATTTTTTTGATAATGGAGGAAATTTCGAA
CCAGCGTTCACTGCCTATCAAGTCTTCATTGTGCCTTTAAATACCGCACG
ATTTAGCCCATATTTTTTAATATATGCTGCATCACTGGACTCCTCCAATC
ATATGCTCCATGAAGCCGTAGAACGTCTCTGGTATTCATTTCATAATCCG
TCAACACCTATGCAGTTACGAGAGCGATTCCTGCAGCATTCAACTAAAAT
TGTGATGTACGCAACAGCTTACGACTCTCGTTGGGTCAGAAAATGGGTTT
TAAGGTTAGCAAATTGGTTGAACGCGTATTTGGATTCGTCTGGAGGAAAC
TCTTACAGTGATCCGGCCTCCCACACCACTTTAACAACTGCTGTTTCCTC
TCTCCTACATGTTTTGATGAAAAAACCAAGTACAGTGACTAGTACTGAGT
TCGTCAACCGCATGAGACTCTACCGAATAATCTCGGCCACTAGTGGTTCC
TTGAAGGCGCTTCCCAGCTTACTCGTTACGTCTTTCTTCGACTTAATGCG
AAACAATTATGACATCGACTATAAGGCAATGCTAAGTGAAAGCAGTGTCT
GGAGTTATTCAACTCAAAGTGAATGTGCGTCGAGTTACATTTACTTTCAT
TCCGATTTGTTTACAAATACAATGTTTCCGAAACTCAAAGCTAAGCTAGA
CAACCACGTGCTGTGGGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:96535..97956-

>Gvermi13797.t1 ID=Gvermi13797.t1|Name=Gvermi13797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1422bp|location=Sequence derived from alignment at ScGOVlb_647:96535..97956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTATTCCTTCCGATGCGGACAGCCGTCTTCAAAAATCTTCAGACGC
GCTGCGAATAAGCATGGCACTAGACCAGAATGACAATCGTAACTCGCTAG
AGTATTTGCGTCTTCTGCACGACCTGTCCGGGACTAATCCGAAGGCCATA
ATACCGATTCTTACAGGGCTGACACATTTCACCGTGGACTTGCACTCGTA
TCCGAAACATTCTCCTTTGCATTTGCTCATACGTGCCGCTCTTTGCATAG
ATATGCATGCGATTAGTCCAACAGAAGAATTGTCAACTCTTGGTCTAGAA
ACCTTCCAGAATTTTCTTGCCAACCTGATTTCTGCAAATGCTGACTACAT
TGATCCCATTTTTAACATGATTGCCAAACGAGTATTTACCATGTCTGCAG
CACAAGATGCTCTTTTAGCTGCAATGCACAAAATCATATGTCATGCAATT
CGTACGTATCCTCGATCTAAACACGTGCTTCTTTCAACATTGCAAAAAAG
CTATCCACATCCAGTGAGACCACCCGTCGAACATCAAGCGTATGCAAGGG
CTATTTTAAAGCTAGCAAAAGAAGAAAGTCTTGCTCAGTCATTACTGCTG
ACAACAATAGAGAGAGTCGCAGCGATTGAAGCCTTGGTGCCTCGTGAAAC
AATAGGAACAGAAAATGGAGAACTTTGCATAGAAGCTGAACGTCTCGAGC
TCGTTCTACTCGAAATCTGCAATTTTTTTGATAATGGAGGAAATTTCGAA
CCAGCGTTCACTGCCTATCAAGTCTTCATTGTGCCTTTAAATACCGCACG
ATTTAGCCCATATTTTTTAATATATGCTGCATCACTGGACTCCTCCAATC
ATATGCTCCATGAAGCCGTAGAACGTCTCTGGTATTCATTTCATAATCCG
TCAACACCTATGCAGTTACGAGAGCGATTCCTGCAGCATTCAACTAAAAT
TGTGATGTACGCAACAGCTTACGACTCTCGTTGGGTCAGAAAATGGGTTT
TAAGGTTAGCAAATTGGTTGAACGCGTATTTGGATTCGTCTGGAGGAAAC
TCTTACAGTGATCCGGCCTCCCACACCACTTTAACAACTGCTGTTTCCTC
TCTCCTACATGTTTTGATGAAAAAACCAAGTACAGTGACTAGTACTGAGT
TCGTCAACCGCATGAGACTCTACCGAATAATCTCGGCCACTAGTGGTTCC
TTGAAGGCGCTTCCCAGCTTACTCGTTACGTCTTTCTTCGACTTAATGCG
AAACAATTATGACATCGACTATAAGGCAATGCTAAGTGAAAGCAGTGTCT
GGAGTTATTCAACTCAAAGTGAATGTGCGTCGAGTTACATTTACTTTCAT
TCCGATTTGTTTACAAATACAATGTTTCCGAAACTCAAAGCTAAGCTAGA
CAACCACGTGCTGTGGGACTAG
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