Gvermi7664.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7664.t1
Unique NameGvermi7664.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1599375..1600121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue8.1e-19
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7664Gvermi7664Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1599375..1600121 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7664.t1.stop1Gvermi7664.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1599375..1599377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7664.t1.CDS1Gvermi7664.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1599375..1600121 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7664.t1.exon1Gvermi7664.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1599375..1600121 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7664.t1.start1Gvermi7664.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1600119..1600121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7664.t1Gvermi7664.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1599375..1600121 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7664.t1 ID=Gvermi7664.t1|Name=Gvermi7664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=249bp
MTTPKIFTTVFALSLLTLVSSSAVPGLPENVMDLPIIDIQESTLVVPLVR
QQQEEAVFAVNSSSAGFARTSQAGLTVQRGTSGVLTFSFNINAIEAETLA
TLDQQFSSSLTVSEMEEYSRLRSDYRSGFGVPFLRWLGINLNNRRVTRED
MQRSFEMRENYNTQSTIAQQILSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGTTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIIPLF*
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spliced messenger RNA

>Gvermi7664.t1 ID=Gvermi7664.t1|Name=Gvermi7664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=747bp|location=Sequence derived from alignment at ScGOVlb_64:1599375..1600121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTCCCAAGATTTTCACAACGGTTTTTGCGCTCTCGCTTCTGAC
ACTCGTGTCGTCTTCAGCTGTTCCAGGACTTCCAGAAAATGTCATGGATC
TACCGATCATCGATATTCAAGAGTCCACTCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTGTTTGCGGTCAACAGCTCCAGTGCCGGATT
TGCCCGTACTTCTCAGGCTGGCCTCACCGTGCAGCGCGGCACTAGTGGTG
TGCTCACCTTTTCGTTCAATATCAATGCCATCGAGGCCGAAACACTGGCT
ACTCTCGATCAGCAGTTTTCTAGCTCACTCACTGTTTCCGAGATGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCGGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGAATCAACCTCAACAACCGCCGCGTCACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACACAGTCCACCAT
TGCGCAGCAGATCTTGTCTAATGTGCAACAGCAGCAACTGCAGATATCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATTCCGACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACCCAAGATGGTACGACGCTAACCGT
AGTGTCGCAGAGCGGCGACAATTTGGTGGCCGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCGCTGTTCTAG
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protein sequence of Gvermi7664.t1

>Gvermi7664.t1 ID=Gvermi7664.t1|Name=Gvermi7664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=249bp
MTTPKIFTTVFALSLLTLVSSSAVPGLPENVMDLPIIDIQESTLVVPLVR
QQQEEAVFAVNSSSAGFARTSQAGLTVQRGTSGVLTFSFNINAIEAETLA
TLDQQFSSSLTVSEMEEYSRLRSDYRSGFGVPFLRWLGINLNNRRVTRED
MQRSFEMRENYNTQSTIAQQILSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGTTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIIPLF*
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mRNA from alignment at ScGOVlb_64:1599375..1600121-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7664.t1 ID=Gvermi7664.t1|Name=Gvermi7664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=747bp|location=Sequence derived from alignment at ScGOVlb_64:1599375..1600121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTCCCAAGATTTTCACAACGGTTTTTGCGCTCTCGCTTCTGAC
ACTCGTGTCGTCTTCAGCTGTTCCAGGACTTCCAGAAAATGTCATGGATC
TACCGATCATCGATATTCAAGAGTCCACTCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTGTTTGCGGTCAACAGCTCCAGTGCCGGATT
TGCCCGTACTTCTCAGGCTGGCCTCACCGTGCAGCGCGGCACTAGTGGTG
TGCTCACCTTTTCGTTCAATATCAATGCCATCGAGGCCGAAACACTGGCT
ACTCTCGATCAGCAGTTTTCTAGCTCACTCACTGTTTCCGAGATGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCGGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGAATCAACCTCAACAACCGCCGCGTCACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACACAGTCCACCAT
TGCGCAGCAGATCTTGTCTAATGTGCAACAGCAGCAACTGCAGATATCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATTCCGACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACCCAAGATGGTACGACGCTAACCGT
AGTGTCGCAGAGCGGCGACAATTTGGTGGCCGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCGCTGTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:1599375..1600121-

>Gvermi7664.t1 ID=Gvermi7664.t1|Name=Gvermi7664.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=747bp|location=Sequence derived from alignment at ScGOVlb_64:1599375..1600121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTCCCAAGATTTTCACAACGGTTTTTGCGCTCTCGCTTCTGAC
ACTCGTGTCGTCTTCAGCTGTTCCAGGACTTCCAGAAAATGTCATGGATC
TACCGATCATCGATATTCAAGAGTCCACTCTTGTTGTTCCTCTTGTTCGC
CAGCAGCAGGAGGAAGCCGTGTTTGCGGTCAACAGCTCCAGTGCCGGATT
TGCCCGTACTTCTCAGGCTGGCCTCACCGTGCAGCGCGGCACTAGTGGTG
TGCTCACCTTTTCGTTCAATATCAATGCCATCGAGGCCGAAACACTGGCT
ACTCTCGATCAGCAGTTTTCTAGCTCACTCACTGTTTCCGAGATGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCGGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGAATCAACCTCAACAACCGCCGCGTCACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACACAGTCCACCAT
TGCGCAGCAGATCTTGTCTAATGTGCAACAGCAGCAACTGCAGATATCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATTCCGACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACCCAAGATGGTACGACGCTAACCGT
AGTGTCGCAGAGCGGCGACAATTTGGTGGCCGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCGCTGTTCTAG
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