Gvermi13668.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi13668.t1
Unique Name	Gvermi13668.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	311

Homology

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1MAH3_9FLOR (DNA-directed RNA polymerase subunit alpha n=6 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MAH3_9FLOR)

HSP 1 Score: 561 bits (1446), Expect = 3.760e-201
Identity = 284/310 (91.61%), Postives = 303/310 (97.74%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGAREHYGHFVLEPL+QGQG TVGNSLRRT+LSEL+GAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGR+KIQGPA+ITTGLFDIP +IEIIDPKQYIATIC+NTIFEMEFKIEQGNGY+LVDKGVDDKSIDFLQIDA+FMPAK+FNY +EEKKIN+SNI EKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKE N ++EKQ+SQILIEELQLSVRAYNCLKRA+IH I+DLLDYSQEELLEIKNFGQKSAEEVIEALS+KLN+NLQKEKI
Sbjct:    1 MTHFQIECIESKTKGAREHYGHFVLEPLKQGQGTTVGNSLRRTVLSELQGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRIKIQGPAVITTGLFDIPQEIEIIDPKQYIATICTNTIFEMEFKIEQGNGYRLVDKGVDDKSIDFLQIDAIFMPAKRFNYKIEEKKINLSNITEKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKENNTNTEKQISQILIEELQLSVRAYNCLKRAQIHCISDLLDYSQEELLEIKNFGQKSAEEVIEALSSKLNINLQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A0B5W2M2_9FLOR (DNA-directed RNA polymerase subunit alpha n=4 Tax=Vertebrata TaxID=1261581 RepID=A0A0B5W2M2_9FLOR)

HSP 1 Score: 550 bits (1418), Expect = 6.950e-197
Identity = 277/310 (89.35%), Postives = 303/310 (97.74%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            M HFQIECIESKTKGAREHYGHFVLEPL+QGQGITVGNSLRRTILSELKGAAIV+VRIAGINHEFSTITGVREDVLEIILNLKEV+L+SYS EPQIGR+KIQGPA+IT+GLFDIPP+IEIIDPKQYIATICSNTIFEMEFKIEQG+GYKLV+KG+DDKSIDFLQIDA+FMPAKKFNY VEEKKIN S+I+EKLFLEVWTNGSISPQEAISQGA+ILT+LFHPLTNISFKSK++ + ++EKQ+SQILIEELQLSVRAYNCLKRA+I+SI DLLDYSQEELLEIKNFGQKSAEEVIEALSNKLN+NLQKEK+
Sbjct:    1 MAHFQIECIESKTKGAREHYGHFVLEPLQQGQGITVGNSLRRTILSELKGAAIVSVRIAGINHEFSTITGVREDVLEIILNLKEVILKSYSTEPQIGRIKIQGPAVITSGLFDIPPEIEIIDPKQYIATICSNTIFEMEFKIEQGHGYKLVEKGIDDKSIDFLQIDAIFMPAKKFNYRVEEKKINASDIKEKLFLEVWTNGSISPQEAISQGANILTKLFHPLTNISFKSKEDISGNTEKQISQILIEELQLSVRAYNCLKRAQINSIGDLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNINLQKEKV 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1MUM3_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Polysiphonia sp. TaxID=1967842 RepID=A0A1Z1MUM3_9FLOR)

HSP 1 Score: 541 bits (1395), Expect = 2.220e-193
Identity = 270/310 (87.10%), Postives = 298/310 (96.13%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            M+HFQIECIESKTKGARE YGHFVLEPL++GQ IT+GNSLRRTILS+LKG AIVAVRIAGINHEFSTITGVREDVLEIILNLKEV+L+SYS EPQIGR++IQGPA+ITTGLFD+PP+IE+IDPKQYIATICSNTIFEMEFKIEQG+GYKL+DKG+DDKSIDFLQIDAVFMPAKKFNYTVEEKKI+ S I EKLF+EVWTNGSISPQEAI QGA +LT+LFHPLTNISFKS+ E N++ EKQ+SQILIEELQLSVRAYNCLKRA+IHSIADLLDYSQEELLEIKNFGQKSAEEVIEAL+NKLN+N+QKEKI
Sbjct:    1 MSHFQIECIESKTKGAREQYGHFVLEPLQKGQAITIGNSLRRTILSDLKGTAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVILKSYSHEPQIGRLRIQGPAVITTGLFDVPPEIEVIDPKQYIATICSNTIFEMEFKIEQGHGYKLIDKGIDDKSIDFLQIDAVFMPAKKFNYTVEEKKIDSSTIAEKLFIEVWTNGSISPQEAICQGALVLTKLFHPLTNISFKSRNEVNENKEKQISQILIEELQLSVRAYNCLKRAQIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALNNKLNINIQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1MH08_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Polysiphonia sertularioides TaxID=945028 RepID=A0A1Z1MH08_9FLOR)

HSP 1 Score: 540 bits (1392), Expect = 6.360e-193
Identity = 271/310 (87.42%), Postives = 302/310 (97.42%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGARE YGHFVLEPL++GQGITVGNSLRRTILSEL G AI+AVRIAGINHEFSTITGVREDVLEIILNLKEVVL+SYS+E QIGRVKIQGPAIITTGLF+IPP+IEIIDPKQYIATICSNTIFEMEFKIEQGNGY+LVDKG+DDKSIDFLQIDA+FMPAKKF+Y VEEK+IN+++ REKLF+EVWTNGSISPQEAISQGA+ILT+LFHPLTNISF+S+KE+ +++EKQ++QILIEELQLSVRAYNCLKRA+IHS+ADLLDYSQEELLEIKNFGQKSAEEVI+ALS KL++NLQKEKI
Sbjct:    1 MTHFQIECIESKTKGAREQYGHFVLEPLQKGQGITVGNSLRRTILSELTGTAIIAVRIAGINHEFSTITGVREDVLEIILNLKEVVLKSYSQETQIGRVKIQGPAIITTGLFEIPPEIEIIDPKQYIATICSNTIFEMEFKIEQGNGYRLVDKGIDDKSIDFLQIDAIFMPAKKFSYRVEEKEINITDTREKLFIEVWTNGSISPQEAISQGANILTKLFHPLTNISFQSQKEKEENTEKQINQILIEELQLSVRAYNCLKRAQIHSVADLLDYSQEELLEIKNFGQKSAEEVIDALSTKLDINLQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A4D6UXK2_9FLOR (DNA-directed RNA polymerase subunit alpha n=3 Tax=Rhodomelaceae TaxID=2803 RepID=A0A4D6UXK2_9FLOR)

HSP 1 Score: 538 bits (1385), Expect = 8.270e-192
Identity = 271/310 (87.42%), Postives = 298/310 (96.13%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGARE YGHFVLEPL++GQGITVGNSLRRTILS+LKG AIVAVRIAGINHEFSTITGVREDVLEIILNLKEV+L+S+S EPQIGR++IQGPA+ITTGLFDIPP+IE+IDPKQYIATICSNTIFEMEFKIEQGNGYKL DKG+D++SIDFL+IDA+FMPAKKFNY +EEKKI+ S I EKLFLE+WTNGSISPQEAIS+GAS+LT LFHPLTNISFKSK E +++ EKQ+SQ+LIEELQLSVRAYNCLKRA+IHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI
Sbjct:    1 MTHFQIECIESKTKGAREQYGHFVLEPLKKGQGITVGNSLRRTILSDLKGTAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVILKSHSAEPQIGRLRIQGPAVITTGLFDIPPEIELIDPKQYIATICSNTIFEMEFKIEQGNGYKLADKGIDERSIDFLRIDAIFMPAKKFNYRIEEKKIDSSTIIEKLFLEIWTNGSISPQEAISKGASMLTNLFHPLTNISFKSKIEISENKEKQISQVLIEELQLSVRAYNCLKRAQIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1M988_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Polysiphonia sertularioides TaxID=945028 RepID=A0A1Z1M988_9FLOR)

HSP 1 Score: 536 bits (1381), Expect = 3.010e-191
Identity = 269/310 (86.77%), Postives = 297/310 (95.81%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESK K ARE YG+FVLEPL+QGQGIT+GNSLRRT+LSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVL+SYSKE QIGR+KIQGPA+ITTGL D+PP++EI+DPKQYIATICSNTIFEMEFKIEQG GY+LVDKGVDDKSIDFLQIDA+FMP KKFNY +EEKKI++SNI+E+LFLEVWTNGSISPQEAISQGASILTQLFHPLTNI+FKSKKE N ++EKQ+ QILIEELQLSVRAYNCLKRA+IHSI DLL+YSQEELLEIKNFGQKSAEEVIEALSNKL++ L+KEK+
Sbjct:    1 MTHFQIECIESKIKSAREQYGYFVLEPLQQGQGITIGNSLRRTVLSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLKSYSKETQIGRIKIQGPAVITTGLLDVPPEVEIVDPKQYIATICSNTIFEMEFKIEQGYGYRLVDKGVDDKSIDFLQIDAIFMPTKKFNYNIEEKKISLSNIQERLFLEVWTNGSISPQEAISQGASILTQLFHPLTNINFKSKKEININTEKQIHQILIEELQLSVRAYNCLKRAQIHSIEDLLNYSQEELLEIKNFGQKSAEEVIEALSNKLDIQLEKEKV 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1M3R7_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Polysiphonia sp. TaxID=1967842 RepID=A0A1Z1M3R7_9FLOR)

HSP 1 Score: 534 bits (1375), Expect = 2.470e-190
Identity = 271/310 (87.42%), Postives = 295/310 (95.16%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGARE YGHFVLEPL++GQ ITVGNSLRRTILS+L G AIVAVRIAGINHEFSTITGVREDVLEIILNLKEV+L+S+S EPQIGR++IQGPA+ITTGLFDIPP+IE+IDPKQYIATICSNTIFEMEFKIEQG+GY+LV+KGVDD+SIDFLQIDAVFMPAKKFNY +EEKKIN   I EKLFLEVWTNGSISPQEAISQGA +LTQLFHPLTNISF+SK E N + EKQV+QILIEELQLSVRAYNCLKRA+IHSIADLLDYSQEELLEIKNFGQKSAEEVI+ALSNKLN+N+QKEKI
Sbjct:    1 MTHFQIECIESKTKGAREQYGHFVLEPLQRGQAITVGNSLRRTILSDLPGTAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVILKSHSTEPQIGRLRIQGPAVITTGLFDIPPEIELIDPKQYIATICSNTIFEMEFKIEQGHGYRLVEKGVDDRSIDFLQIDAVFMPAKKFNYRIEEKKINNITIAEKLFLEVWTNGSISPQEAISQGAYMLTQLFHPLTNISFQSKHEVNANQEKQVNQILIEELQLSVRAYNCLKRAQIHSIADLLDYSQEELLEIKNFGQKSAEEVIDALSNKLNINIQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1MUL0_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Tolypiocladia glomerulata TaxID=860646 RepID=A0A1Z1MUL0_9FLOR)

HSP 1 Score: 533 bits (1373), Expect = 4.990e-190
Identity = 267/310 (86.13%), Postives = 295/310 (95.16%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESK K ARE YGHFVLEPL++GQGIT+GNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVL+SYS E QIGR+KIQGPA+ITTGLFDIPP++E+IDP QYIATICSNTIFEMEFKIEQG GYKLVDKG+DDKSIDFLQIDA+FMPA+KFNY VEEKK+N++  +EKLFLEVWTNGSISPQEAIS+GASILTQ+FHPLTNISFKSKKE   +SEKQ++QILIEELQLS RAYNCLKR +IHSIADLL+YSQ++LLEIKNFGQKSAEEVIEALSNKLN+NL+KEK+
Sbjct:    1 MTHFQIECIESKNKSAREQYGHFVLEPLQKGQGITIGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLKSYSTETQIGRIKIQGPAVITTGLFDIPPEVEVIDPTQYIATICSNTIFEMEFKIEQGYGYKLVDKGIDDKSIDFLQIDAIFMPAQKFNYKVEEKKLNLNTTQEKLFLEVWTNGSISPQEAISEGASILTQIFHPLTNISFKSKKEAYINSEKQINQILIEELQLSARAYNCLKRVQIHSIADLLNYSQDDLLEIKNFGQKSAEEVIEALSNKLNINLEKEKV 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1M7J7_9FLOR (DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1M7J7_9FLOR)

HSP 1 Score: 531 bits (1369), Expect = 2.030e-189
Identity = 269/310 (86.77%), Postives = 293/310 (94.52%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGARE YGHFVLEPL++GQGITVGNSLRRTILS+L+G AIVAVRIAGINHEFSTITGVREDVLEIILNLKEV+L+S+S E QIGR++IQGPA+ITTGLFDIPP+IEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLV+KG+DD+SIDFLQIDA+FMP KKFNY VEEKKIN + I EKLFLEVWTNGSISPQEAISQG+ ILT LFHPLTNI+FKSK E N   EKQ++QILIEELQLSVRAYNCLKRAEIHSIADLLDY+QEELLEIKNFGQKSAEEVIEAL+ KL++NLQKEKI
Sbjct:    1 MTHFQIECIESKTKGAREQYGHFVLEPLKRGQGITVGNSLRRTILSDLQGTAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVILKSHSSESQIGRLRIQGPAVITTGLFDIPPEIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVEKGIDDRSIDFLQIDAIFMPTKKFNYRVEEKKINSTTITEKLFLEVWTNGSISPQEAISQGSHILTSLFHPLTNINFKSKTEINDSKEKQINQILIEELQLSVRAYNCLKRAEIHSIADLLDYTQEELLEIKNFGQKSAEEVIEALNKKLHINLQKEKI 310

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BLAST of Gvermi13668.t1 vs. uniprot
Match: A0A1Z1MC73_9FLOR (DNA-directed RNA polymerase subunit alpha n=1 Tax=Polysiphonia stricta TaxID=173545 RepID=A0A1Z1MC73_9FLOR)

HSP 1 Score: 531 bits (1369), Expect = 2.030e-189
Identity = 260/310 (83.87%), Postives = 299/310 (96.45%), Query Frame = 0

Query:    1 MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKGAAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVKIQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKLVDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTNGSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEELQLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNKLNVNLQKEKI 310
            MTHFQIECIESKTKGAREHYGHFVLEPL++GQGIT+GNSLRRTILS+L+G AIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVL+S++ EPQIGRV+IQGPA+ITTGLFD+PP++EIIDPKQYIATICSNT+FEMEF+IEQGNGYKLV++ +D++SIDFLQID++FMP +KFNY +EEKK+++++I EKLFLE+WTNGS+SPQEAISQGA ILT LFHPLTNISFKSK E N++ +KQV+QILIEELQLSVRAYNCLKRA+IHS+ADL+DYSQEELLEIKNFGQKSAEEVIEALSNKLN+NLQKEKI
Sbjct:    1 MTHFQIECIESKTKGAREHYGHFVLEPLQKGQGITIGNSLRRTILSDLRGTAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLKSHTPEPQIGRVRIQGPAVITTGLFDLPPEVEIIDPKQYIATICSNTLFEMEFRIEQGNGYKLVERAIDERSIDFLQIDSIFMPVRKFNYRIEEKKVDMTHIIEKLFLEIWTNGSLSPQEAISQGAYILTNLFHPLTNISFKSKTEVNENKDKQVNQILIEELQLSVRAYNCLKRAQIHSVADLMDYSQEELLEIKNFGQKSAEEVIEALSNKLNINLQKEKI 310

The following BLAST results are available for this feature:

BLAST of Gvermi13668.t1 vs. uniprot

BLAST of Gvermi13668.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Z1MAH3_9FLOR	3.760e-201	91.61	DNA-directed RNA polymerase subunit alpha n=6 Tax=...	[more]
A0A0B5W2M2_9FLOR	6.950e-197	89.35	DNA-directed RNA polymerase subunit alpha n=4 Tax=...	[more]
A0A1Z1MUM3_9FLOR	2.220e-193	87.10	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]
A0A1Z1MH08_9FLOR	6.360e-193	87.42	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]
A0A4D6UXK2_9FLOR	8.270e-192	87.42	DNA-directed RNA polymerase subunit alpha n=3 Tax=...	[more]
A0A1Z1M988_9FLOR	3.010e-191	86.77	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]
A0A1Z1M3R7_9FLOR	2.470e-190	87.42	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]
A0A1Z1MUL0_9FLOR	4.990e-190	86.13	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]
A0A1Z1M7J7_9FLOR	2.030e-189	86.77	DNA-directed RNA polymerase subunit alpha n=2 Tax=...	[more]
A0A1Z1MC73_9FLOR	2.030e-189	83.87	DNA-directed RNA polymerase subunit alpha n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 20..226 e-value: 9.5E-57 score: 204.5
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 26..219 e-value: 4.4E-18 score: 66.8
None	No IPR available	GENE3D	1.10.150.20		coord: 238..308 e-value: 6.1E-24 score: 85.6
None	No IPR available	PANTHER	PTHR32108:SF0	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 4..305
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 11..223 e-value: 1.48556E-103 score: 299.77
None	No IPR available	SUPERFAMILY	47789	C-terminal domain of RNA polymerase alpha subunit	coord: 244..300
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 60..150 e-value: 1.4E-16 score: 60.8
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 19..218 e-value: 6.3E-72 score: 243.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 2..225
IPR011260	RNA polymerase, alpha subunit, C-terminal	PFAM	PF03118	RNA_pol_A_CTD	coord: 234..298 e-value: 4.9E-25 score: 87.1
IPR011773	DNA-directed RNA polymerase, alpha subunit	TIGRFAM	TIGR02027	TIGR02027	coord: 20..307 e-value: 1.3E-97 score: 324.6
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 4..305
IPR011773	DNA-directed RNA polymerase, alpha subunit	HAMAP	MF_00059	RNApol_bact_RpoA	coord: 1..308 score: 33.881481
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 50..169 e-value: 6.3E-72 score: 243.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 50..170

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:52585..53517 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1	Gvermi13668.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_59 52585..53517 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=311bp
MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKG
AAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVK
IQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKL
VDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTN
GSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEEL
QLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNK
LNVNLQKEKI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262	DNA-dir_RNA_pol_insert
IPR036603	RBP11-like
IPR011260	RNAP_asu_C
IPR011773	DNA-dir_RpoA
IPR036643	RNApol_insert_sf