Gvermi13668.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13668.t1
Unique Name	Gvermi13668.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:52585..53517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	56110.Oscil6304_2747
Preferred name	rpoA
PFAMs	RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC02795
KEGG ko	ko:K03040
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG Module	M00183
GOs	GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576
Evalue	3.61e-133
EggNOG OGs	COG0202@1\|root,COG0202@2\|Bacteria,1G094@1117\|Cyanobacteria,1H8WH@1150\|Oscillatoriales
EC	2.7.7.6
Description	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13668	Gvermi13668	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 52585..53517 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1.start1	Gvermi13668.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 52585..52587 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1.CDS1	Gvermi13668.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 52585..53517 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1.exon1	Gvermi13668.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 52585..53517 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1.stop1	Gvermi13668.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 53515..53517 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13668.t1	Gvermi13668.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 52585..53517 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:52585..53517+
coding sequence from alignment at ScGOVlb_59:52585..53517+

mRNA sequence

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=311bp
MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKG
AAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVK
IQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKL
VDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTN
GSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEEL
QLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNK
LNVNLQKEKI*

spliced messenger RNA

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=933bp|location=Sequence derived from alignment at ScGOVlb_59:52585..53517+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCATTTCCAAATAGAATGTATAGAGTCTAAAACAAAAGGTGCAAG
AGAACATTATGGTCATTTTGTACTAGAACCACTAGAACAAGGTCAAGGAA
TAACTGTTGGCAATTCACTAAGAAGGACTATATTATCAGAGCTAAAAGGT
GCTGCAATAGTTGCAGTTAGGATAGCTGGTATCAATCACGAGTTTTCTAC
TATTACAGGTGTAAGAGAAGATGTTCTAGAAATAATTCTAAACTTAAAAG
AAGTAGTATTAAGGAGTTATAGTAAAGAACCACAAATAGGCAGAGTGAAA
ATTCAAGGACCGGCTATCATAACTACAGGATTATTTGATATACCACCAGA
CATTGAAATTATAGACCCTAAGCAATATATTGCAACAATATGTAGTAACA
CTATTTTTGAAATGGAATTCAAGATAGAACAAGGAAACGGATATAAACTA
GTTGATAAAGGTGTTGATGATAAATCAATAGACTTTTTGCAAATAGATGC
TGTATTTATGCCTGCAAAAAAGTTTAACTACACAGTAGAAGAAAAAAAAA
TTAATGTAAGTAATATTCGTGAAAAATTATTTTTAGAAGTATGGACAAAT
GGTAGTATTTCCCCTCAAGAGGCAATTAGTCAAGGGGCTAGCATTTTAAC
TCAATTGTTTCATCCACTTACCAATATAAGCTTTAAATCCAAAAAAGAAG
AAAATAAAGATTCAGAGAAACAAGTTAGCCAGATACTCATAGAAGAATTA
CAATTATCTGTAAGGGCATATAATTGTCTTAAAAGAGCTGAAATTCACTC
TATCGCAGATTTATTAGACTATTCTCAAGAAGAACTTCTAGAAATAAAAA
ACTTTGGTCAAAAATCAGCTGAAGAAGTTATCGAAGCTTTAAGCAATAAG
CTTAACGTTAACTTGCAAAAGGAAAAAATTTAG

protein sequence of Gvermi13668.t1

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=311bp
MTHFQIECIESKTKGAREHYGHFVLEPLEQGQGITVGNSLRRTILSELKG
AAIVAVRIAGINHEFSTITGVREDVLEIILNLKEVVLRSYSKEPQIGRVK
IQGPAIITTGLFDIPPDIEIIDPKQYIATICSNTIFEMEFKIEQGNGYKL
VDKGVDDKSIDFLQIDAVFMPAKKFNYTVEEKKINVSNIREKLFLEVWTN
GSISPQEAISQGASILTQLFHPLTNISFKSKKEENKDSEKQVSQILIEEL
QLSVRAYNCLKRAEIHSIADLLDYSQEELLEIKNFGQKSAEEVIEALSNK
LNVNLQKEKI*

mRNA from alignment at ScGOVlb_59:52585..53517+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=933bp|location=Sequence derived from alignment at ScGOVlb_59:52585..53517+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCATTTCCAAATAGAATGTATAGAGTCTAAAACAAAAGGTGCAAG
AGAACATTATGGTCATTTTGTACTAGAACCACTAGAACAAGGTCAAGGAA
TAACTGTTGGCAATTCACTAAGAAGGACTATATTATCAGAGCTAAAAGGT
GCTGCAATAGTTGCAGTTAGGATAGCTGGTATCAATCACGAGTTTTCTAC
TATTACAGGTGTAAGAGAAGATGTTCTAGAAATAATTCTAAACTTAAAAG
AAGTAGTATTAAGGAGTTATAGTAAAGAACCACAAATAGGCAGAGTGAAA
ATTCAAGGACCGGCTATCATAACTACAGGATTATTTGATATACCACCAGA
CATTGAAATTATAGACCCTAAGCAATATATTGCAACAATATGTAGTAACA
CTATTTTTGAAATGGAATTCAAGATAGAACAAGGAAACGGATATAAACTA
GTTGATAAAGGTGTTGATGATAAATCAATAGACTTTTTGCAAATAGATGC
TGTATTTATGCCTGCAAAAAAGTTTAACTACACAGTAGAAGAAAAAAAAA
TTAATGTAAGTAATATTCGTGAAAAATTATTTTTAGAAGTATGGACAAAT
GGTAGTATTTCCCCTCAAGAGGCAATTAGTCAAGGGGCTAGCATTTTAAC
TCAATTGTTTCATCCACTTACCAATATAAGCTTTAAATCCAAAAAAGAAG
AAAATAAAGATTCAGAGAAACAAGTTAGCCAGATACTCATAGAAGAATTA
CAATTATCTGTAAGGGCATATAATTGTCTTAAAAGAGCTGAAATTCACTC
TATCGCAGATTTATTAGACTATTCTCAAGAAGAACTTCTAGAAATAAAAA
ACTTTGGTCAAAAATCAGCTGAAGAAGTTATCGAAGCTTTAAGCAATAAG
CTTAACGTTAACTTGCAAAAGGAAAAAATTTAG

Coding sequence (CDS) from alignment at ScGOVlb_59:52585..53517+

>Gvermi13668.t1 ID=Gvermi13668.t1|Name=Gvermi13668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=933bp|location=Sequence derived from alignment at ScGOVlb_59:52585..53517+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCATTTCCAAATAGAATGTATAGAGTCTAAAACAAAAGGTGCAAG
AGAACATTATGGTCATTTTGTACTAGAACCACTAGAACAAGGTCAAGGAA
TAACTGTTGGCAATTCACTAAGAAGGACTATATTATCAGAGCTAAAAGGT
GCTGCAATAGTTGCAGTTAGGATAGCTGGTATCAATCACGAGTTTTCTAC
TATTACAGGTGTAAGAGAAGATGTTCTAGAAATAATTCTAAACTTAAAAG
AAGTAGTATTAAGGAGTTATAGTAAAGAACCACAAATAGGCAGAGTGAAA
ATTCAAGGACCGGCTATCATAACTACAGGATTATTTGATATACCACCAGA
CATTGAAATTATAGACCCTAAGCAATATATTGCAACAATATGTAGTAACA
CTATTTTTGAAATGGAATTCAAGATAGAACAAGGAAACGGATATAAACTA
GTTGATAAAGGTGTTGATGATAAATCAATAGACTTTTTGCAAATAGATGC
TGTATTTATGCCTGCAAAAAAGTTTAACTACACAGTAGAAGAAAAAAAAA
TTAATGTAAGTAATATTCGTGAAAAATTATTTTTAGAAGTATGGACAAAT
GGTAGTATTTCCCCTCAAGAGGCAATTAGTCAAGGGGCTAGCATTTTAAC
TCAATTGTTTCATCCACTTACCAATATAAGCTTTAAATCCAAAAAAGAAG
AAAATAAAGATTCAGAGAAACAAGTTAGCCAGATACTCATAGAAGAATTA
CAATTATCTGTAAGGGCATATAATTGTCTTAAAAGAGCTGAAATTCACTC
TATCGCAGATTTATTAGACTATTCTCAAGAAGAACTTCTAGAAATAAAAA
ACTTTGGTCAAAAATCAGCTGAAGAAGTTATCGAAGCTTTAAGCAATAAG
CTTAACGTTAACTTGCAAAAGGAAAAAATTTAG