Gvermi13683.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi13683.t1
Unique NameGvermi13683.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Homology
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MAU1_9FLOR (50S ribosomal protein L12, chloroplastic n=4 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MAU1_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 1.400e-54
Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = 0
Query:   23 SGTVTNNLKEAITEFKAEAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            S  + N ++E  +    EAADLVKQIE+TFGVDASV+++SGVVMMP ++ EAS +++EE+TEFDVILEEVPAPKKITILKVVRSLT+LGLKEAKELVES PKLIKESTSKEDAEEIRSKLEEVGAKVSIK
Sbjct:    2 SDKINNIIEELKSLTLLEAADLVKQIEDTFGVDASVAASSGVVMMPTDTSEASLESTEEKTEFDVILEEVPAPKKITILKVVRSLTALGLKEAKELVESAPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MSY8_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Kapraunia schneideri TaxID=717899 RepID=A0A1Z1MSY8_9FLOR)

HSP 1 Score: 171 bits (433), Expect = 2.670e-52
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            + N +   I + K+    EAADLVKQIE+TF VDAS S+ +GVVMMP  S E SSD SEEQTEFDVILEEVPAPKKITILKVVRSLT+LGLKEAKELVES PK IKESTSKEDAE+IRSKLEEVGAKVSIK
Sbjct:    1 MNNKINNIIEDLKSLTLLEAADLVKQIEDTFDVDASASTNTGVVMMPNNSDEGSSDDSEEQTEFDVILEEVPAPKKITILKVVRSLTALGLKEAKELVESAPKPIKESTSKEDAEDIRSKLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MG64_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Polysiphonia sertularioides TaxID=945028 RepID=A0A1Z1MG64_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 1.090e-51
Identity = 100/131 (76.34%), Postives = 112/131 (85.50%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            ++N +   I E K+    EAADLVKQIEETFGVDASVSS +G+VMM  ES +A +D  EE+TEFDVILEEVPAPKKIT+LKVVRSLTSLGLKEAKELVES P+ IKESTSKEDAE+IRSKLEEVGAKVSIK
Sbjct:    1 MSNKINNIIEELKSLTLLEAADLVKQIEETFGVDASVSSGAGMVMMTNESSDAPNDDLEEKTEFDVILEEVPAPKKITVLKVVRSLTSLGLKEAKELVESAPRPIKESTSKEDAEDIRSKLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MDU2_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Chondria sp. (in: Rhodophyta) TaxID=1982705 RepID=A0A1Z1MDU2_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 2.540e-50
Identity = 96/130 (73.85%), Postives = 111/130 (85.38%), Query Frame = 0
Query:   23 SGTVTNNLKEAITEFKAEAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            S  + N ++E  T    EAA+LVKQIEETFGVD SVS+ SG+V+M A+SG  +++  EE+TEFDVILEEVPAPKKITILKVVR+LTSLGLKEAKELVESTP+ IKESTSKEDAEEI+SKLEEVGAKV IK
Sbjct:    2 SEKINNIIEELKTLTLLEAAELVKQIEETFGVDTSVSAGSGMVVMQADSGNTTTEQQEEKTEFDVILEEVPAPKKITILKVVRALTSLGLKEAKELVESTPRAIKESTSKEDAEEIKSKLEEVGAKVVIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1M4Z9_OSMFI (50S ribosomal protein L12, chloroplastic n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4Z9_OSMFI)

HSP 1 Score: 165 bits (417), Expect = 7.260e-50
Identity = 96/130 (73.85%), Postives = 108/130 (83.08%), Query Frame = 0
Query:   23 SGTVTNNLKEAITEFKAEAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            S  + N ++E  +    EAA+LVKQIEE FGVDAS +  SG+VMMP +S + SS+  EE+TEFDVILEEVPAPKKI ILKVVRSLTSLGLKEAKELVESTPK IKESTSKEDAE+IRSKLEE GAKVSIK
Sbjct:    2 SDKINNIIEELKSLTLLEAAELVKQIEEIFGVDASAAVNSGMVMMPTDSNDISSEKVEEKTEFDVILEEVPAPKKIAILKVVRSLTSLGLKEAKELVESTPKAIKESTSKEDAEDIRSKLEEAGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MSZ4_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Dictyomenia sonderi TaxID=2007178 RepID=A0A1Z1MSZ4_9FLOR)

HSP 1 Score: 164 bits (416), Expect = 1.030e-49
Identity = 96/131 (73.28%), Postives = 110/131 (83.97%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            ++N +   I E K+    EAA+LVKQIEETFGVDASV S  G+VMMP++     ++  EE+TEFDVILEEVPAPKKITILKVVRSLT+LGLKEAKELVESTPK+IKES SKEDAEEIRS+LEEVGAKVSIK
Sbjct:    1 MSNKIDNIIEELKSLTLLEAAELVKQIEETFGVDASVMSNPGMVMMPSDINSTPAEEVEEKTEFDVILEEVPAPKKITILKVVRSLTALGLKEAKELVESTPKMIKESISKEDAEEIRSQLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1M9K3_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Polysiphonia sertularioides TaxID=945028 RepID=A0A1Z1M9K3_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 1.460e-49
Identity = 98/130 (75.38%), Postives = 107/130 (82.31%), Query Frame = 0
Query:   23 SGTVTNNLKEAITEFKAEAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            S  + N ++E  +    EAADLVKQIEETFGVDASVSS SG+VM+      +S D  EE+TEFDVILEEVPAPKKITILKVVR+LTSLGLKEAKELVES PK IKESTSKEDAEEIR KLEEVGAKVSIK
Sbjct:    2 SDKINNIIEELKSLTLLEAADLVKQIEETFGVDASVSSGSGMVMVAGNVDNSSQDEVEEKTEFDVILEEVPAPKKITILKVVRALTSLGLKEAKELVESAPKAIKESTSKEDAEEIRLKLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MUZ4_DIGSM (50S ribosomal protein L12, chloroplastic n=1 Tax=Digenea simplex TaxID=945030 RepID=A0A1Z1MUZ4_DIGSM)

HSP 1 Score: 164 bits (414), Expect = 2.070e-49
Identity = 96/131 (73.28%), Postives = 109/131 (83.21%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            +TN +   I E K+    EAA+LVKQIEE FGVDAS S+++G+VMMP +   +S+   +E+TEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVES PK IKES SKEDAEEIRSKLEEVGAKVSIK
Sbjct:    1 MTNKINNIIEELKSLTLLEAAELVKQIEEIFGVDASASASTGMVMMPTDVTTSSTSKEDEKTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESAPKSIKESVSKEDAEEIRSKLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1MF30_9FLOR (50S ribosomal protein L12, chloroplastic n=4 Tax=Vertebrata TaxID=1261581 RepID=A0A1Z1MF30_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 2.940e-49
Identity = 95/131 (72.52%), Postives = 111/131 (84.73%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            ++N +   I E K+    EAADLVKQIEETFGVDAS+++ SG+VMM +ES +A  D  EE+TEFDVILEEVPAPKKITILKVVRSLT+LGLKEAKELVES P+ IKESTSKEDAE+I+ +LEEVGAKVSIK
Sbjct:    1 MSNKINNIIEELKSLTLLEAADLVKQIEETFGVDASITAGSGMVMMQSESSDALKDEIEEKTEFDVILEEVPAPKKITILKVVRSLTALGLKEAKELVESAPRPIKESTSKEDAEKIKEQLEEVGAKVSIK 131          
BLAST of Gvermi13683.t1 vs. uniprot
Match: A0A1Z1M443_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Polysiphonia sp. TaxID=1967842 RepID=A0A1Z1M443_9FLOR)

HSP 1 Score: 162 bits (411), Expect = 5.930e-49
Identity = 95/131 (72.52%), Postives = 112/131 (85.50%), Query Frame = 0
Query:   26 VTNNLKEAITEFKA----EAADLVKQIEETFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITILKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVSIK 152
            ++N +   I E K+    EAA+LVKQIEETFGVDAS ++++G+VMMP++   AS +  EE+TEFDVILEEVPAPKKI+ILKVVRSLT+LGLKEAKELVESTPK IKES SKEDAEEIRS+LEEVGAKVSIK
Sbjct:    1 MSNKIDNIIEELKSLTLLEAAELVKQIEETFGVDASAAASTGMVMMPSDLSGASVEQVEEKTEFDVILEEVPAPKKISILKVVRSLTALGLKEAKELVESTPKAIKESISKEDAEEIRSQLEEVGAKVSIK 131          
The following BLAST results are available for this feature:
BLAST of Gvermi13683.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z1MAU1_9FLOR1.400e-5477.6950S ribosomal protein L12, chloroplastic n=4 Tax=R... [more]
A0A1Z1MSY8_9FLOR2.670e-5277.1050S ribosomal protein L12, chloroplastic n=1 Tax=K... [more]
A0A1Z1MG64_9FLOR1.090e-5176.3450S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A1Z1MDU2_9FLOR2.540e-5073.8550S ribosomal protein L12, chloroplastic n=1 Tax=C... [more]
A0A1Z1M4Z9_OSMFI7.260e-5073.8550S ribosomal protein L12, chloroplastic n=1 Tax=O... [more]
A0A1Z1MSZ4_9FLOR1.030e-4973.2850S ribosomal protein L12, chloroplastic n=1 Tax=D... [more]
A0A1Z1M9K3_9FLOR1.460e-4975.3850S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A1Z1MUZ4_DIGSM2.070e-4973.2850S ribosomal protein L12, chloroplastic n=1 Tax=D... [more]
A0A1Z1MF30_9FLOR2.940e-4972.5250S ribosomal protein L12, chloroplastic n=4 Tax=V... [more]
A0A1Z1M443_9FLOR5.930e-4972.5250S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..47
NoneNo IPR availablePANTHERPTHR45987:SF1650S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATEDcoord: 39..152
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 28..152
e-value: 3.1E-36
score: 122.5
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 39..152
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 22..152
score: 21.870018
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 40..151
e-value: 3.86518E-42
score: 134.59
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 78..152
e-value: 1.3E-27
score: 97.7
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 80..152
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 85..152
e-value: 1.5E-26
score: 92.5
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 1..40
e-value: 4.1E-12
score: 48.3
IPR023673Ribosomal protein L1, conserved sitePROSITEPS01199RIBOSOMAL_L1coord: 2..20
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 1..42
IPR036235Ribosomal protein L7/L12, oligomerisation domain superfamilySUPERFAMILY48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 39..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:137126..137895 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1Gvermi13683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_59 137126..137895 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MMLMIAKLGRLLGPRGLMPSPKSGTVTNNLKEAITEFKAEAADLVKQIEE
TFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITI
LKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVS
IK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000206Ribosomal_L7/12
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR013823Ribosomal_L7/L12_C
IPR016095Ribosomal_L1_3-a/b-sand
IPR023673Ribosomal_L1_CS
IPR023674Ribosomal_L1-like
IPR036235Ribosomal_L7/L12_oligo_N_sf