Gvermi13683.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13683.t1
Unique NameGvermi13683.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:137126..137895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog582515.KR51_00035350
Preferred namerplL
PFAMsRibosomal_L12,Ribosomal_L12_N
Max annot lvl1117|Cyanobacteria
KEGG koko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue3.92e-36
EggNOG OGsCOG0222@1|root,COG0222@2|Bacteria,1G6XE@1117|Cyanobacteria
DescriptionForms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13683Gvermi13683Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 137126..137895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1Gvermi13683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 137126..137895 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1.start1Gvermi13683.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 137126..137128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1.CDS1Gvermi13683.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 137126..137243 +
Gvermi13683.t1.CDS2Gvermi13683.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 137555..137895 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1.exon1Gvermi13683.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 137126..137243 +
Gvermi13683.t1.exon2Gvermi13683.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 137555..137895 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1.intron1Gvermi13683.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 137244..137554 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13683.t1.stop1Gvermi13683.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 137893..137895 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MMLMIAKLGRLLGPRGLMPSPKSGTVTNNLKEAITEFKAEAADLVKQIEE
TFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITI
LKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVS
IK*
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spliced messenger RNA

>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_59:137126..137895+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCATGATAGCTAAATTGGGTCGTTTATTAGGTCCTAGAGGTTT
AATGCCCTCTCCTAAGTCTGGTACTGTGACTAATAATCTAAAAGAAGCTA
TAACTGAATTTAAAGCTGAAGCAGCAGATTTAGTTAAACAAATTGAAGAA
ACATTTGGTGTAGATGCTTCAGTTTCATCGACTTCTGGAGTAGTTATGAT
GCCAGCTGAATCTGGTGAAGCTTCTTCTGATGCGTCTGAAGAGCAAACAG
AGTTTGATGTTATTTTGGAAGAAGTACCTGCACCAAAAAAGATTACCATA
TTGAAGGTTGTTCGTTCGTTGACTTCTTTAGGTTTGAAAGAAGCTAAAGA
GTTGGTTGAGTCTACACCCAAGTTAATAAAAGAAAGCACCTCTAAAGAAG
ATGCAGAAGAAATTAGATCTAAATTAGAGGAAGTTGGTGCAAAGGTTTCT
ATTAAGTAA
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protein sequence of Gvermi13683.t1

>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MMLMIAKLGRLLGPRGLMPSPKSGTVTNNLKEAITEFKAEAADLVKQIEE
TFGVDASVSSTSGVVMMPAESGEASSDASEEQTEFDVILEEVPAPKKITI
LKVVRSLTSLGLKEAKELVESTPKLIKESTSKEDAEEIRSKLEEVGAKVS
IK*
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mRNA from alignment at ScGOVlb_59:137126..137895+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=770bp|location=Sequence derived from alignment at ScGOVlb_59:137126..137895+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCATGATAGCTAAATTGGGTCGTTTATTAGGTCCTAGAGGTTT
AATGCCCTCTCCTAAGTCTGGTACTGTGACTAATAATCTAAAAGAAGCTA
TAACTGAATTTAAAGCTGGTAAGTTAGAATATAAAATTGACCGTACAGGT
ATAGTTCATGTTCCTATTGGTAAAATTAATTTTTCGATCAATGATCTTAA
GTTAAATCTTAAGGCTTTATATGATTCAATTGAAAAAAATCGTCCTAGTG
GTTCTAGAGGAAAGTATTGGAAATCTTTATATTTATCTAGTACAATGGGA
CCAGGTATTCCTGTAGATATAGCGTTACTGAAAGAAATTGTTACAGGATA
ATATAAAATTAAGCAAAAGTTAGTATGAGTAATAAAATTAGTAATATTAT
TGAAGAATTAAAATCCCTAAGTTTGTTAGAAGCAGCAGATTTAGTTAAAC
AAATTGAAGAAACATTTGGTGTAGATGCTTCAGTTTCATCGACTTCTGGA
GTAGTTATGATGCCAGCTGAATCTGGTGAAGCTTCTTCTGATGCGTCTGA
AGAGCAAACAGAGTTTGATGTTATTTTGGAAGAAGTACCTGCACCAAAAA
AGATTACCATATTGAAGGTTGTTCGTTCGTTGACTTCTTTAGGTTTGAAA
GAAGCTAAAGAGTTGGTTGAGTCTACACCCAAGTTAATAAAAGAAAGCAC
CTCTAAAGAAGATGCAGAAGAAATTAGATCTAAATTAGAGGAAGTTGGTG
CAAAGGTTTCTATTAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:137126..137895+

>Gvermi13683.t1 ID=Gvermi13683.t1|Name=Gvermi13683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_59:137126..137895+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCATGATAGCTAAATTGGGTCGTTTATTAGGTCCTAGAGGTTT
AATGCCCTCTCCTAAGTCTGGTACTGTGACTAATAATCTAAAAGAAGCTA
TAACTGAATTTAAAGCTGAAGCAGCAGATTTAGTTAAACAAATTGAAGAA
ACATTTGGTGTAGATGCTTCAGTTTCATCGACTTCTGGAGTAGTTATGAT
GCCAGCTGAATCTGGTGAAGCTTCTTCTGATGCGTCTGAAGAGCAAACAG
AGTTTGATGTTATTTTGGAAGAAGTACCTGCACCAAAAAAGATTACCATA
TTGAAGGTTGTTCGTTCGTTGACTTCTTTAGGTTTGAAAGAAGCTAAAGA
GTTGGTTGAGTCTACACCCAAGTTAATAAAAGAAAGCACCTCTAAAGAAG
ATGCAGAAGAAATTAGATCTAAATTAGAGGAAGTTGGTGCAAAGGTTTCT
ATTAAGTAA
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