Gvermi13666.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi13666.t1
Unique Name	Gvermi13666.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	176

Homology

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MHY6_MELHR (ATP synthase subunit b, chloroplastic n=1 Tax=Melanothamnus harveyi TaxID=397005 RepID=A0A1Z1MHY6_MELHR)

HSP 1 Score: 227 bits (579), Expect = 1.840e-73
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0

Query:   47 VERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            +ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQ RLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL
Sbjct:   50 IERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQARLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MAE7_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Leptosiphonia brodiei TaxID=2608611 RepID=A0A1Z1MAE7_9FLOR)

HSP 1 Score: 199 bits (506), Expect = 2.310e-62
Identity = 110/128 (85.94%), Postives = 124/128 (96.88%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            ERQ+KV+FAIKESEERLEQAT RL+EAKKQLAQTQIIINQIINEAEETAKKVR SIL+QGK+DIEKLTQSSK SI+FAE+QVRLQIQQQIT+LAI+KVSAE+ NQMNPIMHNKII++SIMQ+EG+INL
Sbjct:   51 ERQDKVLFAIKESEERLEQATLRLDEAKKQLAQTQIIINQIINEAEETAKKVRESILEQGKVDIEKLTQSSKASIQFAENQVRLQIQQQITALAIEKVSAEINNQMNPIMHNKIINQSIMQLEGKINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MBZ3_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Polysiphonia elongata TaxID=159753 RepID=A0A1Z1MBZ3_9FLOR)

HSP 1 Score: 198 bits (503), Expect = 6.610e-62
Identity = 108/128 (84.38%), Postives = 122/128 (95.31%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            ERQ KV+FAIKESEERLEQAT RLNEAKKQLAQTQ+IINQIINEAE+TAKKVR SIL+QGK+DIEKLTQSSK SIKFAE+QVRLQIQ QIT+LAIQKV++EM +QMNP+MHNKIID+SIMQ+EG+INL
Sbjct:   51 ERQNKVLFAIKESEERLEQATLRLNEAKKQLAQTQVIINQIINEAEDTAKKVRESILEQGKVDIEKLTQSSKASIKFAENQVRLQIQHQITALAIQKVTSEMKSQMNPVMHNKIIDQSIMQLEGKINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MT68_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Kapraunia schneideri TaxID=717899 RepID=A0A1Z1MT68_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 3.800e-61
Identity = 110/127 (86.61%), Postives = 119/127 (93.70%), Query Frame = 0

Query:   49 RQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            RQ KVIFAIKESEERLEQAT RL+EAKKQLAQTQIIINQIINEAE+TAKKVR SILDQGK+DIEKLTQSSK SIKFAEDQV+LQIQQQI SLA+QKVS ++ NQMNPIMHNKIID+SIMQI G+INL
Sbjct:   52 RQSKVIFAIKESEERLEQATLRLDEAKKQLAQTQIIINQIINEAEDTAKKVRESILDQGKVDIEKLTQSSKASIKFAEDQVKLQIQQQIISLALQKVSIQIKNQMNPIMHNKIIDQSIMQIGGKINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A8E6KZU4_9FLOR (ATP synthase CF0 subunit I n=1 Tax=Erythrocystis saccata TaxID=2822695 RepID=A0A8E6KZU4_9FLOR)

HSP 1 Score: 190 bits (483), Expect = 7.220e-59
Identity = 106/128 (82.81%), Postives = 118/128 (92.19%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            ERQ KV+FAIKESEERLEQAT RL+EAKKQL QTQIIINQIINEAEETAKKVR SIL+QGKIDIEKLTQSSK SI FAE+QVR QIQQQIT+LAI KVS+E+ NQMNP MHNKII+++IMQ+EG+INL
Sbjct:   51 ERQNKVVFAIKESEERLEQATLRLDEAKKQLTQTQIIINQIINEAEETAKKVRESILEQGKIDIEKLTQSSKTSITFAENQVRAQIQQQITALAIDKVSSEIINQMNPTMHNKIINETIMQLEGEINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MES5_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Polysiphonia infestans TaxID=2006978 RepID=A0A1Z1MES5_9FLOR)

HSP 1 Score: 184 bits (466), Expect = 2.750e-56
Identity = 103/128 (80.47%), Postives = 116/128 (90.62%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            ERQ KV+FAI+ESEERL+QAT RLNEAKKQLAQTQIIINQIINEAE TAKKVR SIL+QGK+DI KLT+SSK SI+FAEDQVRLQIQQQIT LAIQKVS+E+ + MNP M NKIID+SIMQ+E +INL
Sbjct:   51 ERQSKVLFAIQESEERLDQATLRLNEAKKQLAQTQIIINQIINEAETTAKKVRESILEQGKVDINKLTESSKTSIEFAEDQVRLQIQQQITLLAIQKVSSEIKDHMNPAMQNKIIDQSIMQLENKINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A0B5W3J9_9FLOR (ATP synthase subunit b n=1 Tax=Vertebrata lanosa TaxID=1261582 RepID=A0A0B5W3J9_9FLOR)

HSP 1 Score: 178 bits (451), Expect = 7.120e-54
Identity = 99/128 (77.34%), Postives = 117/128 (91.41%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            +RQ KV+ AI+ESEERL+QA  RL+EA+KQLAQTQIIINQIINEAE TAKKVR SIL+QGK DI+KLTQSSK S+KFAEDQV+LQIQQQITSLAIQKV++E  +Q+N IMH+KIIDKSIMQ+EG+I+L
Sbjct:   61 DRQSKVLVAIRESEERLDQANMRLSEAEKQLAQTQIIINQIINEAETTAKKVRESILEQGKSDIQKLTQSSKASVKFAEDQVKLQIQQQITSLAIQKVTSEFKSQINSIMHSKIIDKSIMQLEGEISL 188

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MEP6_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Vertebrata isogona TaxID=2006944 RepID=A0A1Z1MEP6_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 1.480e-53
Identity = 99/128 (77.34%), Postives = 116/128 (90.62%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            +RQ KV+ AI+ES+ERLEQA  RLNEA+KQLAQTQIIINQIINEAE TAKKVR SIL+QGK DIEKLTQSSK S+KFAE+QVRLQIQQQITSLAIQKV+ E  +Q+N +MH+KIID+SI+Q+EG+INL
Sbjct:   51 DRQNKVLVAIQESKERLEQANVRLNEAEKQLAQTQIIINQIINEAESTAKKVRESILEQGKSDIEKLTQSSKASVKFAENQVRLQIQQQITSLAIQKVTNEFKSQINSMMHSKIIDQSIIQLEGEINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MVR3_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Polysiphonia teges TaxID=2007110 RepID=A0A1Z1MVR3_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 1.480e-53
Identity = 99/128 (77.34%), Postives = 116/128 (90.62%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            ERQ KV+FAI+ESEERLEQA ARLNEA+KQLAQTQII+NQII+EAE TAKKVR SIL+QGK DIEKLT+SSK S+K AE+QVRLQIQQQIT+LAI+KVS E+ +QMN +M  KIID+SIMQ+EG+INL
Sbjct:   51 ERQSKVLFAIRESEERLEQANARLNEAEKQLAQTQIIVNQIISEAETTAKKVRESILEQGKSDIEKLTKSSKASVKSAENQVRLQIQQQITALAIKKVSTELKSQMNSVMQTKIIDQSIMQLEGKINL 178

[Close]

BLAST of Gvermi13666.t1 vs. uniprot
Match: A0A1Z1MIB0_9FLOR (ATP synthase subunit b, chloroplastic n=1 Tax=Vertebrata australis TaxID=2006943 RepID=A0A1Z1MIB0_9FLOR)

HSP 1 Score: 176 bits (447), Expect = 2.100e-53
Identity = 99/128 (77.34%), Postives = 116/128 (90.62%), Query Frame = 0

Query:   48 ERQEKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVRLSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMTNQMNPIMHNKIIDKSIMQIEGQINL 175
            +RQ+KV+ AI+ESEERL+QA  RL EA+KQLAQTQIIINQIINEAE TAKKVR SIL+QGK DIEKLTQSSK S+KFAE+QVRLQIQQQITSLAIQKV+A   +Q+N +MH+KIID+SIMQ+EG+INL
Sbjct:   51 DRQKKVLVAIRESEERLDQANIRLGEAEKQLAQTQIIINQIINEAEATAKKVRESILEQGKFDIEKLTQSSKVSVKFAENQVRLQIQQQITSLAIQKVTAGFKSQINSMMHSKIIDQSIMQLEGEINL 178

The following BLAST results are available for this feature:

BLAST of Gvermi13666.t1 vs. uniprot

BLAST of Gvermi13666.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1Z1MHY6_MELHR	1.840e-73	98.45	ATP synthase subunit b, chloroplastic n=1 Tax=Mela...	[more]
A0A1Z1MAE7_9FLOR	2.310e-62	85.94	ATP synthase subunit b, chloroplastic n=1 Tax=Lept...	[more]
A0A1Z1MBZ3_9FLOR	6.610e-62	84.38	ATP synthase subunit b, chloroplastic n=1 Tax=Poly...	[more]
A0A1Z1MT68_9FLOR	3.800e-61	86.61	ATP synthase subunit b, chloroplastic n=1 Tax=Kapr...	[more]
A0A8E6KZU4_9FLOR	7.220e-59	82.81	ATP synthase CF0 subunit I n=1 Tax=Erythrocystis s...	[more]
A0A1Z1MES5_9FLOR	2.750e-56	80.47	ATP synthase subunit b, chloroplastic n=1 Tax=Poly...	[more]
A0A0B5W3J9_9FLOR	7.120e-54	77.34	ATP synthase subunit b n=1 Tax=Vertebrata lanosa T...	[more]
A0A1Z1MEP6_9FLOR	1.480e-53	77.34	ATP synthase subunit b, chloroplastic n=1 Tax=Vert...	[more]
A0A1Z1MVR3_9FLOR	1.480e-53	77.34	ATP synthase subunit b, chloroplastic n=1 Tax=Poly...	[more]
A0A1Z1MIB0_9FLOR	2.100e-53	77.34	ATP synthase subunit b, chloroplastic n=1 Tax=Vert...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..91
None	No IPR available	PANTHER	PTHR10031:SF41	ATPASE, F0 COMPLEX, SUBUNIT C, V-ATPASE PROTEOLIPID SUBUNIT C-LIKE DOMAIN PROTEIN-RELATED	coord: 1..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..175
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	CDD	cd06503	ATP-synt_Fo_b	coord: 48..146 e-value: 1.65824E-9 score: 51.2843
None	No IPR available	TMHMM	TMhelix		coord: 4..26
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 33..48 score: 36.58 coord: 12..31 score: 41.86
IPR000454	ATP synthase, F0 complex, subunit C	PANTHER	PTHR10031	ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..46
IPR002146	ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast	PFAM	PF00430	ATP-synt_B	coord: 48..149 e-value: 2.4E-11 score: 43.8
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 11..45 e-value: 6.5E-11 score: 42.4
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 1..61 e-value: 1.9E-16 score: 61.8
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 3..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:35302..36721 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13666.t1	Gvermi13666.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_59 35302..36721 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MDSIISAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEVERQ
EKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVR
LSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMT
NQMNPIMHNKIIDKSIMQIEGQINL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000454	ATP_synth_F0_csu
IPR002146	ATP_synth_b/b'su_bac/chlpt
IPR002379	ATPase_proteolipid_c-like_dom
IPR038662	ATP_synth_F0_csu_sf
IPR035921	F/V-ATP_Csub_sf