Gvermi13666.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13666.t1
Unique NameGvermi13666.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:35302..36721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705038.1
Preferred nameATPD
PFAMsOSCP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043,RC00087
KEGG koko:K02111,ko:K02113,ko:K12524
KEGG TC3.A.2.1
KEGG ReactionR00480,R01773,R01775
KEGG Pathwayko00190,ko00195,ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00190,map00195,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00017,M00018,M00157,M00526,M00527
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009772,GO:0009773,GO:0009941,GO:0009987,GO:0010033,GO:0010287,GO:0010319,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0098542
Evalue1.1e-20
EggNOG OGsCOG0056@1|root,COG0712@1|root,KOG1353@2759|Eukaryota,KOG1662@2759|Eukaryota
EC1.1.1.3,2.7.2.4,3.6.3.14
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13666Gvermi13666Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 35302..36721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1Gvermi13666.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 35302..36721 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1.start1Gvermi13666.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 35302..35304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1.CDS1Gvermi13666.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 35302..35440 +
Gvermi13666.t1.CDS2Gvermi13666.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 36333..36721 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1.exon1Gvermi13666.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 35302..35440 +
Gvermi13666.t1.exon2Gvermi13666.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 36333..36721 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1.intron1Gvermi13666.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 35441..36332 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13666.t1.stop1Gvermi13666.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 36719..36721 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=176bp
MDSIISAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEVERQ
EKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVR
LSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMT
NQMNPIMHNKIIDKSIMQIEGQINL*
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spliced messenger RNA

>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_59:35302..36721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTATCATTTCAGCAGCTTCTGTTATAGCTGCAGGTTTAGCCGT
AGGTTTAGCTGCTATTGGACCTGGTATTGGACAAGGAAGTGCGGCAGCTA
ATGCTGTAGAAGGTATTGCTAGACAACCTGAAGTAGAAGTTGAAAGACAA
GAAAAAGTTATATTTGCAATTAAGGAATCAGAAGAAAGATTAGAGCAAGC
AACAGCAAGATTAAATGAAGCTAAAAAACAACTTGCTCAAACTCAAATAA
TTATTAATCAAATTATTAATGAAGCCGAGGAAACTGCTAAAAAGGTTAGA
CTGTCAATTCTTGATCAAGGTAAAATTGATATAGAAAAACTAACACAATC
AAGTAAAGATAGTATTAAATTTGCTGAAGACCAAGTTAGGTTACAAATAC
AACAGCAAATTACATCTTTAGCTATTCAGAAGGTTAGTGCAGAAATGACA
AATCAAATGAATCCTATTATGCACAATAAGATAATAGATAAGAGTATCAT
GCAAATAGAGGGTCAAATTAATCTATGA
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protein sequence of Gvermi13666.t1

>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MDSIISAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEVERQ
EKVIFAIKESEERLEQATARLNEAKKQLAQTQIIINQIINEAEETAKKVR
LSILDQGKIDIEKLTQSSKDSIKFAEDQVRLQIQQQITSLAIQKVSAEMT
NQMNPIMHNKIIDKSIMQIEGQINL*
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mRNA from alignment at ScGOVlb_59:35302..36721+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1420bp|location=Sequence derived from alignment at ScGOVlb_59:35302..36721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTATCATTTCAGCAGCTTCTGTTATAGCTGCAGGTTTAGCCGT
AGGTTTAGCTGCTATTGGACCTGGTATTGGACAAGGAAGTGCGGCAGCTA
ATGCTGTAGAAGGTATTGCTAGACAACCTGAAGTAGAAGGTAAAATTAGG
GGTACTCTGTTATTAAGTTTAGCATTTATGGAGTCTTTAACAATTTACGG
ACTAGTAGTTGCTTTATCTTTATTATTTGCTAATCCTTACACTAATTAGT
TTTAATATAACACTTAGTTAGTTAACTAAGTGTTTTCAAGATATTGTTTA
TACTAAATTAACTACTAAGTAGTAACTACAAAAATAAGTAATTTATCAAT
TATATGCACACAATTATATTATTAATTACTGAAGTTGCTGAAAGCAATTC
AAAAGGAGGGTTATTCGATTTTAATGCTACTCTTCCATTGATGGCATTAC
AGTTTATTGGACTAACTCTTTTATTAAACGTATTATATTATAAACCTGTA
ATTAATATTTTAGATGACAGGGAAGAATACATACGTAATAGCCTAACTAG
TGCTTCTGCCTCTTTATTACAAGCTGATGAATTAACTAAAACATATGAGT
TAGAACTAGCAGAATCACGCAAAAGTGCACAAAAGATTATAAAAAATGCT
CAAGAAGAAGCTCAGTTAATTGTTTCAGAAAAAATTAAAGAAGCACAGAA
AAATGCAGAAAAGTTACTAGTGGAAGCTTATGACCAGCTAAGTCAACAAA
AACAACAAGCATTAAAAAGCTTAGAAGTTCAGGTAGATATCTTAAGTGAT
CAAATACAAGATAAGttacttaataactattaattattattatattaaaa
tttaaatagttatattaattatgtattaaaaatatgaatatcttttacat
tattaCACAAAATACAATGTACTCTGGCATTAGTTTTAATTCTAATTTTT
TAGAAGCAAATGTGTTAAACATTTTTCTACTATTGTCTGGTTTAATTTAT
GTACTTAAAAATTTTCTTGGATCTATTTTAGTTGAAAGACAAGAAAAAGT
TATATTTGCAATTAAGGAATCAGAAGAAAGATTAGAGCAAGCAACAGCAA
GATTAAATGAAGCTAAAAAACAACTTGCTCAAACTCAAATAATTATTAAT
CAAATTATTAATGAAGCCGAGGAAACTGCTAAAAAGGTTAGACTGTCAAT
TCTTGATCAAGGTAAAATTGATATAGAAAAACTAACACAATCAAGTAAAG
ATAGTATTAAATTTGCTGAAGACCAAGTTAGGTTACAAATACAACAGCAA
ATTACATCTTTAGCTATTCAGAAGGTTAGTGCAGAAATGACAAATCAAAT
GAATCCTATTATGCACAATAAGATAATAGATAAGAGTATCATGCAAATAG
AGGGTCAAATTAATCTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_59:35302..36721+

>Gvermi13666.t1 ID=Gvermi13666.t1|Name=Gvermi13666.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=528bp|location=Sequence derived from alignment at ScGOVlb_59:35302..36721+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTATCATTTCAGCAGCTTCTGTTATAGCTGCAGGTTTAGCCGT
AGGTTTAGCTGCTATTGGACCTGGTATTGGACAAGGAAGTGCGGCAGCTA
ATGCTGTAGAAGGTATTGCTAGACAACCTGAAGTAGAAGTTGAAAGACAA
GAAAAAGTTATATTTGCAATTAAGGAATCAGAAGAAAGATTAGAGCAAGC
AACAGCAAGATTAAATGAAGCTAAAAAACAACTTGCTCAAACTCAAATAA
TTATTAATCAAATTATTAATGAAGCCGAGGAAACTGCTAAAAAGGTTAGA
CTGTCAATTCTTGATCAAGGTAAAATTGATATAGAAAAACTAACACAATC
AAGTAAAGATAGTATTAAATTTGCTGAAGACCAAGTTAGGTTACAAATAC
AACAGCAAATTACATCTTTAGCTATTCAGAAGGTTAGTGCAGAAATGACA
AATCAAATGAATCCTATTATGCACAATAAGATAATAGATAAGAGTATCAT
GCAAATAGAGGGTCAAATTAATCTATGA
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