Gvermi12884.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12884.t1
Unique NameGvermi12884.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Homology
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A2V3J1U1_9FLOR (Small GTPase-like protein LIP2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1U1_9FLOR)

HSP 1 Score: 444 bits (1141), Expect = 7.040e-156
Identity = 217/274 (79.20%), Postives = 240/274 (87.59%), Query Frame = 0
Query:    1 MEDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPPLACRISVRYMEDHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPWQAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGMKADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFLKKVAASAKRKSPASSQRLQTRHTRGHMMIGFS 274
            ME    IRILVVGDDNVGKSTLV+ALCG +H +KPP+ACRISVR  EDH+QEFYD+PGSPHFQHGRKLFF+H RY+AVLFVYD SDP+TRSSVSCVW+PEVM HLGDAGAVESGGRLDGSD HVRSRG +NELRFLWRQAFFSHGAVSP QAG EALRLL+RL RL+LNE+GVW++SSIDREAERMFLATS VPVAI+GMKADL DRDD Q D       AVPH+RLHANNAA D +L+ FLKKVA SAKRK P+SSQRL +RH+ GHMMIGFS
Sbjct:    1 MEPTNTIRILVVGDDNVGKSTLVRALCGLTHDAKPPMACRISVRAFEDHIQEFYDIPGSPHFQHGRKLFFSHTRYNAVLFVYDVSDPATRSSVSCVWVPEVMVHLGDAGAVESGGRLDGSDIHVRSRGALNELRFLWRQAFFSHGAVSPIQAGREALRLLMRLFRLILNETGVWTNSSIDREAERMFLATSTVPVAIVGMKADLVDRDDLQRDFLHDHPQAVPHLRLHANNAAHDVKLAAFLKKVADSAKRKPPSSSQRLSSRHSHGHMMIGFS 274          
BLAST of Gvermi12884.t1 vs. uniprot
Match: R7QIR8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIR8_CHOCR)

HSP 1 Score: 321 bits (823), Expect = 1.800e-107
Identity = 161/278 (57.91%), Postives = 207/278 (74.46%), Query Frame = 0
Query:    1 MEDLQAIRILVVGDDNVGKSTLVQALCGASHHS--KPPLACRISVRYMED--HLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPWQAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGMKADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFLKKVAASAKRKSPASSQRLQTRHTRGHMMIGFS 274
            ME    +R+LVVGDDNVGK+TLVQALCGAS HS  K    C +SVR   D  H++EFYD+ G+P ++HGR++FF+H RYD V+FVYD +D STRSS+SC W+PEVM HLGD GA+E+GGR DG + HVRS GVINELRFLWRQ FF+H  VS  QA  E +RL  RL+RL +NE G+W DSS+D EAER++LATSLVP AI+GMK+DL DR +T+  + +     VP +RL+AN+ A DA+LS FL++VA SAKRK  A++    +R T    ++GF+
Sbjct:    1 MEQAITVRLLVVGDDNVGKTTLVQALCGASSHSIGKTTAGCAVSVRLANDSKHVEEFYDVAGAPRYRHGRQVFFSHKRYDGVIFVYDVTDRSTRSSISCTWVPEVMTHLGDVGAIEAGGRGDGEEAHVRSAGVINELRFLWRQVFFTHSRVSSAQAIKEGVRLSWRLMRLWMNEMGLWPDSSLDEEAERVYLATSLVPCAIVGMKSDLVDRPETRDGEIQNRPKGVPDVRLYANSVAHDAKLSAFLRRVAESAKRK--AATPIKSSRRTASGQLLGFA 276          
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A7S2ZE64_9RHOD (Hypothetical protein (Fragment) n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZE64_9RHOD)

HSP 1 Score: 95.9 bits (237), Expect = 1.610e-19
Identity = 71/252 (28.17%), Postives = 118/252 (46.83%), Query Frame = 0
Query:    2 EDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPP------LACRISVRYME-----DHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPWQAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGMKADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFL 242
            E+L  +RI V GD  VGK+ L ++LC  S   +        + CRI VR  +       L EF D+ GS  F+  R +F   ++ D V+FV+D +   +R+S+  +W+PEV+  L      E    L+       S   + EL    R+      ++   + G   + L+++ +R  L       D   ++  ER    + ++P+  +GMK DLA RD  +  + + +  +VP+  L A  A  +  L TFL
Sbjct:    3 EELPRVRIFVFGDTGVGKTALCKSLCRRSKADEVSNEGGWTVGCRIHVRKHQLDQNSSILVEFCDVGGSAKFEDSRLVFLRRLQADGVVFVHDLTWVPSRASIRRLWLPEVVRCLDSE--AEDRSSLEEFFNPASSVDEVGELFSAIRRGELRQCSLLLMRLGERLVELIMQYVREFLG------DDLAEKAQERAMCRSVMIPMLFVGMKRDLATRDQRKLAKAD-LPPSVPYAELDAKTAPSNPNLVTFL 245          
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A7S0LWJ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWJ2_9CRYP)

HSP 1 Score: 63.9 bits (154), Expect = 2.500e-9
Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 0
Query:    5 QAIRILVVGDDNVGKSTLVQALCGASHHSKP--PLACRISVRYMEDH-------LQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSV 93
            + IR+L++GD  VGKS+L   +C      +P   + C I V+Y E           EF+D+ GSP FQ  R +F++++ YD ++FV+  ++  +R ++
Sbjct:    9 EKIRVLILGDSGVGKSSLAHLICTGEELKRPRSTVGCTIHVKYHESRACPGKSSFVEFWDVGGSPKFQESRHIFYSNV-YDGIIFVHSVANSVSRKNL 105          
BLAST of Gvermi12884.t1 vs. uniprot
Match: L1I819_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I819_GUITC)

HSP 1 Score: 61.2 bits (147), Expect = 1.980e-7
Identity = 38/126 (30.16%), Postives = 65/126 (51.59%), Query Frame = 0
Query:    5 QAIRILVVGDDNVGKSTLVQALCGASHHSKP--PLACRISVRYMEDHLQ-------EFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGGRLDGSD 121
            + +R+LV+GD  VGK++L+  +C      +P   + C + ++  E  L        EF+DL GS  FQ  R++F+++   D V+ V+D ++  +R ++   W  E  +H   AG   S  R  G D
Sbjct:    9 ERLRLLVMGDSGVGKTSLMHLICEGEELRRPRSTVGCTVHMKLHESKLLPGKTAFVEFWDLGGSARFQTSRQVFYSNA-VDGVILVHDVTNSISRRNLE-KWKQEWTQHASGAGGAGSWDRTWGDD 132          
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A485LMZ4_9STRA (Aste57867_23132 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMZ4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.160e-7
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 0
Query:    3 DLQAIRILVVGDDNVGKSTLVQALCGASHHSKPP--LACRISVRYMEDH-LQEFYDLPGSPHFQHGRKLFF-----------AHIRYDAVLFVYDASDPSTRSSVSCVWIPEV 101
            DL+ +RI VVGD  VGKS+LV  LC  +  + P   + C   V   +DH   EF D+ G+P ++  R  F+           +H R   ++FVYD S+  + +++   WI E+
Sbjct:   15 DLRTVRIAVVGDSGVGKSSLVHFLCHGAVLTHPTWTIGCTTEVLLYQDHTFIEFVDIGGNPRYEISRSAFYHELHGASTSLASHERLSGIIFVYDMSNIRSYNNLR-KWIAEL 126          
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A4Y7IM72_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IM72_PAPSO)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-6
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    7 IRILVVGDDNVGKSTLVQALCGASHHSKPP--LACRISVRYM-----------------EDHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGG 115
            IR+LVVGD  VGKS+LVQ +      ++P   + C ++V++                   D   E +D+ G   ++  R LF++ I  + V+FVYD S P T+ S+   W  E+  +   +  + SGG
Sbjct:   22 IRVLVVGDSGVGKSSLVQLIVNGLSIARPSQTVGCSVNVKHTTYGSSGSSSNSSKGDSERDFFVELWDISGHERYKDCRSLFYSQI--NGVIFVYDLSQPRTKKSLQ-KWAVEISANGSFSAPLGSGG 146          
BLAST of Gvermi12884.t1 vs. uniprot
Match: UPI001884BC95 (rab-like protein 3 n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884BC95)

HSP 1 Score: 57.4 bits (137), Expect = 2.020e-6
Identity = 34/120 (28.33%), Postives = 62/120 (51.67%), Query Frame = 0
Query:    1 MEDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPP--LACRISVRYME---------DHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAG 109
            M D++ ++++VVGD  VGK++LV  +C      KP   + C + VR  +          +  E +D+ GS   Q+ R +F+       V+ V+D S+  T++++   W+ EV++  G  G
Sbjct:    1 MNDIETVKVVVVGDSGVGKTSLVHLICHNEPCPKPSWTIGCELDVRIHDFREGLPAQRTYCVELWDVGGSAAHQNARHVFYGGAH--GVILVHDRSNRKTQNTLGA-WLAEVLQRDGGGG 117          
BLAST of Gvermi12884.t1 vs. uniprot
Match: UPI0018ADF989 (small GTPase LIP1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADF989)

HSP 1 Score: 58.9 bits (141), Expect = 2.160e-6
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    7 IRILVVGDDNVGKSTLVQALCGASHHSKPP--LACRISVRYM-----------------EDHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGG 115
            +R+L+VGD  VGK++LV  +   S  S+PP  + C + V+++                  D   E +D+ G   ++  R LF+A I  + V+FV+D S   T+SS+   W  E+      +  + SGG
Sbjct:   23 VRVLIVGDSGVGKTSLVHLIVNGSSISRPPQTIGCAVGVKHITYGSPGSSSNSIKGDAERDFFVELWDVSGHERYKDCRSLFYAQI--NGVIFVHDLSQRRTKSSLQ-KWASEIAATGSFSAPLGSGG 147          
BLAST of Gvermi12884.t1 vs. uniprot
Match: A0A2I0HP10_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HP10_PUNGR)

HSP 1 Score: 57.8 bits (138), Expect = 2.250e-6
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 0
Query:    7 IRILVVGDDNVGKSTLVQALCGASHHSKPP--LACRISVRYM-----------------EDHLQEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPEVMEHLGDAGAVESGG 115
            +R+LVVGD  VGK++LV  +   S  S+P   + C + V+++                  D   E +D+ G   ++  R LF++ I  + V+FVYD S   T++S+   W  EV      +  +ESGG
Sbjct:   22 VRVLVVGDSGVGKTSLVHLIVNGSAISRPSQTIGCTVGVKHITYGNSGSSSSSITGDAERDFFVELWDVSGHDRYKDCRSLFYSQI--NGVIFVYDLSQRRTKTSLQ-KWATEVAATGTFSAPLESGG 146          
The following BLAST results are available for this feature:
BLAST of Gvermi12884.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A2V3J1U1_9FLOR7.040e-15679.20Small GTPase-like protein LIP2 n=1 Tax=Gracilariop... [more]
R7QIR8_CHOCR1.800e-10757.91Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZE64_9RHOD1.610e-1928.17Hypothetical protein (Fragment) n=4 Tax=Rhodosorus... [more]
A0A7S0LWJ2_9CRYP2.500e-932.65Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1I819_GUITC1.980e-730.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A485LMZ4_9STRA4.160e-733.63Aste57867_23132 protein n=1 Tax=Aphanomyces stella... [more]
A0A4Y7IM72_PAPSO1.600e-630.47Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
UPI001884BC952.020e-628.33rab-like protein 3 n=1 Tax=Pollicipes pollicipes T... [more]
UPI0018ADF9892.160e-629.69small GTPase LIP1 n=1 Tax=Dioscorea cayennensis su... [more]
A0A2I0HP10_PUNGR2.250e-630.47Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 191..204
score: 36.91
coord: 7..28
score: 33.81
NoneNo IPR availablePANTHERPTHR24073DRAB5-RELATEDcoord: 5..219
NoneNo IPR availablePANTHERPTHR24073:SF128RAB-LIKE PROTEIN 3coord: 5..219
NoneNo IPR availableCDDcd00882Ras_like_GTPasecoord: 10..98
e-value: 8.75188E-10
score: 54.3848
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..256
e-value: 1.6E-15
score: 58.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..235
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 8..86
e-value: 5.7E-9
score: 36.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1929913..1930818 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1Gvermi12884.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1929913..1930818 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
MEDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPPLACRISVRYMEDHL
QEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPE
VMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPW
QAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGM
KADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFLKKVAASAK
RKSPASSQRLQTRHTRGHMMIGFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006073GTP-bd