Gvermi12884.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12884.t1
Unique NameGvermi12884.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1929913..1930818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4113.PGSC0003DMT400080131
PFAMsRas,Roc
Max annot lvl35493|Streptophyta
KEGG koko:K07933,ko:K07976
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007275,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0010468,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0032501,GO:0032502,GO:0032922,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048511,GO:0048856,GO:0050789,GO:0050896,GO:0060255,GO:0065007
Evalue2.88e-06
EggNOG OGs2CN0E@1|root,2QT3S@2759|Eukaryota,37R3Y@33090|Viridiplantae,3G7H1@35493|Streptophyta,44CMM@71274|asterids
DescriptionRas of Complex, Roc, domain of DAPkinase
COG categoryU
BRITEko00000,ko04031
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12884Gvermi12884Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1929913..1930818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1Gvermi12884.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1929913..1930818 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1.stop1Gvermi12884.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1929913..1929915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1.CDS1Gvermi12884.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1929913..1930677 -
Gvermi12884.t1.CDS2Gvermi12884.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1930759..1930818 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1.exon1Gvermi12884.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1929913..1930677 -
Gvermi12884.t1.exon2Gvermi12884.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1930759..1930818 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1.intron1Gvermi12884.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1930678..1930758 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12884.t1.start1Gvermi12884.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1930816..1930818 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp
MEDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPPLACRISVRYMEDHL
QEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPE
VMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPW
QAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGM
KADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFLKKVAASAK
RKSPASSQRLQTRHTRGHMMIGFS*
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spliced messenger RNA

>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:1929913..1930818- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATCTTCAGGCAATTCGAATCCTAGTTGTAGGAGATGACAACGT
TGGCAAATCTACCCTTGTACAAGCTCTATGTGGAGCATCTCATCACTCTA
AACCACCGCTGGCGTGCCGCATTTCTGTGAGATATATGGAAGACCACCTG
CAAGAATTCTACGACTTGCCAGGAAGCCCTCACTTCCAGCATGGGCGAAA
ACTTTTCTTTGCTCACATCCGTTATGATGCAGTTTTATTTGTCTATGATG
CCTCAGACCCATCAACGCGATCCTCCGTAAGTTGCGTATGGATTCCAGAG
GTAATGGAACATTTGGGTGACGCTGGGGCTGTGGAATCAGGCGGTAGGCT
AGATGGCAGTGATACTCACGTGCGCAGTCGTGGAGTAATCAACGAGCTAC
GCTTTCTTTGGCGACAGGCTTTCTTCTCCCACGGAGCGGTATCTCCCTGG
CAAGCAGGCGCCGAGGCCTTGAGATTATTAGTGAGATTAATTCGCTTGCT
GTTGAATGAAAGTGGGGTCTGGAGTGATTCTTCCATAGACAGAGAGGCTG
AACGAATGTTTCTTGCTACCAGCCTCGTTCCAGTTGCTATTATTGGTATG
AAGGCTGATCTCGCCGACAGAGATGACACTCAGGCGGATCAGTTCGAAGG
TATACATTTAGCTGTCCCTCACATCCGTCTACATGCCAATAATGCGGCTC
AGGATGCAAGGCTTTCGACGTTCTTGAAGAAAGTTGCTGCGTCAGCTAAG
CGAAAGAGCCCAGCTTCTTCTCAGCGTCTCCAAACAAGACACACCCGCGG
TCACATGATGATAGGCTTCTCATAG
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protein sequence of Gvermi12884.t1

>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
MEDLQAIRILVVGDDNVGKSTLVQALCGASHHSKPPLACRISVRYMEDHL
QEFYDLPGSPHFQHGRKLFFAHIRYDAVLFVYDASDPSTRSSVSCVWIPE
VMEHLGDAGAVESGGRLDGSDTHVRSRGVINELRFLWRQAFFSHGAVSPW
QAGAEALRLLVRLIRLLLNESGVWSDSSIDREAERMFLATSLVPVAIIGM
KADLADRDDTQADQFEGIHLAVPHIRLHANNAAQDARLSTFLKKVAASAK
RKSPASSQRLQTRHTRGHMMIGFS*
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mRNA from alignment at ScGOVlb_425:1929913..1930818-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_425:1929913..1930818- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATCTTCAGGCAATTCGAATCCTAGTTGTAGGAGATGACAACGT
TGGCAAATCTGTAAGTTCGGTGTAGACAATGAAAGGTAGACTAAAGAACC
AGAAAGCAGAAGAGCTGACATGATTATCTGGAAATTATTAGACCCTTGTA
CAAGCTCTATGTGGAGCATCTCATCACTCTAAACCACCGCTGGCGTGCCG
CATTTCTGTGAGATATATGGAAGACCACCTGCAAGAATTCTACGACTTGC
CAGGAAGCCCTCACTTCCAGCATGGGCGAAAACTTTTCTTTGCTCACATC
CGTTATGATGCAGTTTTATTTGTCTATGATGCCTCAGACCCATCAACGCG
ATCCTCCGTAAGTTGCGTATGGATTCCAGAGGTAATGGAACATTTGGGTG
ACGCTGGGGCTGTGGAATCAGGCGGTAGGCTAGATGGCAGTGATACTCAC
GTGCGCAGTCGTGGAGTAATCAACGAGCTACGCTTTCTTTGGCGACAGGC
TTTCTTCTCCCACGGAGCGGTATCTCCCTGGCAAGCAGGCGCCGAGGCCT
TGAGATTATTAGTGAGATTAATTCGCTTGCTGTTGAATGAAAGTGGGGTC
TGGAGTGATTCTTCCATAGACAGAGAGGCTGAACGAATGTTTCTTGCTAC
CAGCCTCGTTCCAGTTGCTATTATTGGTATGAAGGCTGATCTCGCCGACA
GAGATGACACTCAGGCGGATCAGTTCGAAGGTATACATTTAGCTGTCCCT
CACATCCGTCTACATGCCAATAATGCGGCTCAGGATGCAAGGCTTTCGAC
GTTCTTGAAGAAAGTTGCTGCGTCAGCTAAGCGAAAGAGCCCAGCTTCTT
CTCAGCGTCTCCAAACAAGACACACCCGCGGTCACATGATGATAGGCTTC
TCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1929913..1930818-

>Gvermi12884.t1 ID=Gvermi12884.t1|Name=Gvermi12884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=825bp|location=Sequence derived from alignment at ScGOVlb_425:1929913..1930818- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATCTTCAGGCAATTCGAATCCTAGTTGTAGGAGATGACAACGT
TGGCAAATCTACCCTTGTACAAGCTCTATGTGGAGCATCTCATCACTCTA
AACCACCGCTGGCGTGCCGCATTTCTGTGAGATATATGGAAGACCACCTG
CAAGAATTCTACGACTTGCCAGGAAGCCCTCACTTCCAGCATGGGCGAAA
ACTTTTCTTTGCTCACATCCGTTATGATGCAGTTTTATTTGTCTATGATG
CCTCAGACCCATCAACGCGATCCTCCGTAAGTTGCGTATGGATTCCAGAG
GTAATGGAACATTTGGGTGACGCTGGGGCTGTGGAATCAGGCGGTAGGCT
AGATGGCAGTGATACTCACGTGCGCAGTCGTGGAGTAATCAACGAGCTAC
GCTTTCTTTGGCGACAGGCTTTCTTCTCCCACGGAGCGGTATCTCCCTGG
CAAGCAGGCGCCGAGGCCTTGAGATTATTAGTGAGATTAATTCGCTTGCT
GTTGAATGAAAGTGGGGTCTGGAGTGATTCTTCCATAGACAGAGAGGCTG
AACGAATGTTTCTTGCTACCAGCCTCGTTCCAGTTGCTATTATTGGTATG
AAGGCTGATCTCGCCGACAGAGATGACACTCAGGCGGATCAGTTCGAAGG
TATACATTTAGCTGTCCCTCACATCCGTCTACATGCCAATAATGCGGCTC
AGGATGCAAGGCTTTCGACGTTCTTGAAGAAAGTTGCTGCGTCAGCTAAG
CGAAAGAGCCCAGCTTCTTCTCAGCGTCTCCAAACAAGACACACCCGCGG
TCACATGATGATAGGCTTCTCATAG
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