Gvermi12795.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12795.t2
Unique NameGvermi12795.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length756
Homology
BLAST of Gvermi12795.t2 vs. uniprot
Match: A0A2V3IES9_9FLOR (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES9_9FLOR)

HSP 1 Score: 206 bits (524), Expect = 7.610e-53
Identity = 134/235 (57.02%), Postives = 145/235 (61.70%), Query Frame = 0
Query:   16 ALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAAWGAPVTLQPVQSIWANTGVWTADDPKRRRRDA-RTVPPADSVLCPTVEHSTAPPPCRSPPSAPVSAAPAAXXALXXXXXXXXXXXXXXXLQRPPAPGAAPVSAXXXXXXXXXXXXXXXXHAPNSDSQVVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIM 249
            ALVR+ AAAQ       RA + TAARALDRAVAAAWGAPV+L PVQSIWANTGVWTADDPKRRRRD  R VPPA++VLCPTVE          PPSA  SA P +                         P +AP                    A +SD  +VR LEN LRRRK+DRARDILFEN    VF TRHYNSLLDA VKANRL DAE+LFAEF RN L  DVASYSIM
Sbjct:   68 ALVRNTAAAQXXXXXXPRAPYATAARALDRAVAAAWGAPVSLHPVQSIWANTGVWTADDPKRRRRDPHRPVPPAEAVLCPTVE----------PPSAAHSAPPLSTLI----------------------PPSAPTPLRTHVNSAQHTPP-----AKSSDPDLVRLLENSLRRRKLDRARDILFENFGTAVFHTRHYNSLLDAFVKANRLPDAELLFAEFGRNSLTPDVASYSIM 265          
BLAST of Gvermi12795.t2 vs. uniprot
Match: R7QMM7_CHOCR (PPR_long domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMM7_CHOCR)

HSP 1 Score: 98.2 bits (243), Expect = 2.100e-17
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0
Query:  171 PNSDSQVVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMI 250
            P     VVRQLENC+RRRK+D+ARDIL  +A  RVF TRHYN+LL AL K+NR+ +AE LF +F  +GL  DVAS+SIMI
Sbjct:  198 PQDQVDVVRQLENCIRRRKLDKARDILLGHATTRVFGTRHYNALLAALAKSNRVDEAERLFCQFANSGLAHDVASHSIMI 277          
BLAST of Gvermi12795.t2 vs. uniprot
Match: A0A1X6NU58_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NU58_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 1.680e-8
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  170 APNSDSQVVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRN-GLVRDVASYSIMICAYG 254
            A    + ++R+LE CLR+RK+DRA  I+ E     +   RH N++LDAL K+ R+ +A+ LF +FD    L RDVA++SIM+  YG
Sbjct:  366 AREQQADLLRRLETCLRKRKLDRALAIVREGVTAHLLGVRHANAVLDALGKSGRVAEAQKLFEQFDHPLALRRDVATHSIMVSTYG 451          
BLAST of Gvermi12795.t2 vs. uniprot
Match: A0A5J4YX80_PORPP (Pentatricopeptide repeat-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YX80_PORPP)

HSP 1 Score: 60.8 bits (146), Expect = 8.440e-6
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  169 HAPNSDSQ-VVRQLENCLRRRKIDRARDILFENAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMICAY 253
            H P +  + +  +LE+ LR R++  A  +L E    RVF TRHYN++LDAL K  ++ +AE LF+         DVASYSIMI  Y
Sbjct:  246 HVPKATQRRLAARLESALRERRVADACALLHEYGSMRVFSTRHYNAVLDALCKGQKVAEAERLFSSLSSP----DVASYSIMISMY 327          
The following BLAST results are available for this feature:
BLAST of Gvermi12795.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IES9_9FLOR7.610e-5357.02Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7QMM7_CHOCR2.100e-1762.50PPR_long domain-containing protein n=1 Tax=Chondru... [more]
A0A1X6NU58_PORUM1.680e-844.19Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A5J4YX80_PORPP8.440e-643.02Pentatricopeptide repeat-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 569..745
e-value: 3.1E-39
score: 137.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 151..288
e-value: 1.1E-24
score: 88.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 432..553
e-value: 9.8E-39
score: 135.6
coord: 291..398
e-value: 6.6E-35
score: 123.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 454..481
e-value: 5.8E-5
score: 21.0
coord: 384..418
e-value: 3.3E-7
score: 28.1
coord: 245..278
e-value: 1.2E-7
score: 29.5
coord: 314..348
e-value: 9.7E-7
score: 26.6
coord: 349..382
e-value: 1.7E-8
score: 32.1
coord: 560..594
e-value: 5.3E-5
score: 21.1
coord: 279..313
e-value: 6.1E-7
score: 27.2
coord: 490..522
e-value: 2.2E-10
score: 38.1
coord: 211..243
e-value: 8.2E-6
score: 23.7
coord: 420..452
e-value: 1.2E-7
score: 29.5
coord: 525..559
e-value: 2.4E-8
score: 31.7
coord: 595..628
e-value: 6.0E-10
score: 36.7
coord: 665..694
e-value: 0.0026
score: 15.8
coord: 630..663
e-value: 8.4E-4
score: 17.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 311..360
e-value: 8.2E-16
score: 57.9
coord: 630..676
e-value: 1.6E-8
score: 34.7
coord: 242..288
e-value: 3.0E-10
score: 40.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 375..429
e-value: 1.5E-13
score: 50.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 210..239
e-value: 6.4E-4
score: 19.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 628..662
score: 8.681407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 452..482
score: 9.141782
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..311
score: 11.651919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 593..627
score: 13.822257
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 207..241
score: 9.174665
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 312..346
score: 12.298636
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..557
score: 11.005202
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 417..451
score: 12.232868
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 347..381
score: 12.41921
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 488..522
score: 13.920909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 382..416
score: 10.435215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 242..276
score: 11.355965
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 663..697
score: 10.402331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 558..592
score: 11.202506
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 458..608
e-value: 2.6E-16
score: 59.6
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 207..392
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 389..533
coord: 350..457
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 207..392
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 522..723
coord: 350..457
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 308..427
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 389..533
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 522..723
coord: 308..427
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 245..557

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1537547..1539814 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t2Gvermi12795.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1537547..1539814 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12795.t2 ID=Gvermi12795.t2|Name=Gvermi12795.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=756bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRRRRDARTVPPADSVLCPTVEHST
APPPCRSPPSAPVSAAPAASAALSPVCPAPASMSSFAPLQRPPAPGAAPV
SAVAAAAAAAAAAAAAASHAPNSDSQVVRQLENCLRRRKIDRARDILFEN
AQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIMI
CAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEAA
LRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVIT
YGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQPH
RAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGLR
PDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDACG
KSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQM
RSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNTL
IDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLALQ
LYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWEN
VGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSGG
VPVLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long