Gvermi12913.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12913.t1
Unique NameGvermi12913.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length158
Homology
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A2V3J2M3_9FLOR (Glycine cleavage system H protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2M3_9FLOR)

HSP 1 Score: 246 bits (627), Expect = 2.130e-81
Identity = 116/155 (74.84%), Postives = 143/155 (92.26%), Query Frame = 0
Query:    1 MATILRALPLRRVAKTAPSFARPALARAFSSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAE 155
            MAT+LR+LPLRRVA++AP+F RP+L R FSSYPSDRKY SSHEWAKL+GDVAT+GITDHAQAALGDIVFADLP++ + AVSGERAATVESVKAAADIY+PL+GE+VGVN  L++TPD+INS PH+EGWIFQ+KVSDP++++ LM +++YEKT+ E
Sbjct:    1 MATLLRSLPLRRVAQSAPAFMRPSLLRHFSSYPSDRKYNSSHEWAKLDGDVATIGITDHAQAALGDIVFADLPEVGSSAVSGERAATVESVKAAADIYAPLDGEVVGVNEKLEETPDLINSEPHEEGWIFQIKVSDPSQLDALMGSDDYEKTLEE 155          
BLAST of Gvermi12913.t1 vs. uniprot
Match: R7QNQ4_CHOCR (Glycine cleavage system H protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNQ4_CHOCR)

HSP 1 Score: 211 bits (536), Expect = 1.590e-67
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = 0
Query:   10 LRRVAKTAPSFARPALA-----RAFSSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEE 156
            L R A+  PS    ALA      + +SYPSDRKYK+SHEWAKL+GDVATVGITDHAQAALGDIVFADLP++ +EA +GERAATVESVKAAADIY+PL+GE+VGVN  L D+PD+IN +PHD+GWIF++KV+DPA+I+ LM + +YEKTIAEE
Sbjct:    4 LLRAARAPPSLRARALAVLPRFLSAASYPSDRKYKASHEWAKLDGDVATVGITDHAQAALGDIVFADLPEVGSEASAGERAATVESVKAAADIYAPLSGEVVGVNDSLDDSPDLINKTPHDDGWIFRIKVNDPAQIDALMDSADYEKTIAEE 155          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A4Q7Z909_9GAMM (Glycine cleavage system H protein n=1 Tax=Fluviicoccus keumensis TaxID=1435465 RepID=A0A4Q7Z909_9GAMM)

HSP 1 Score: 166 bits (419), Expect = 4.090e-50
Identity = 74/127 (58.27%), Postives = 102/127 (80.31%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEE 156
            S+ PSD KY SSHEWA+L+GDV TVGITDHAQ ALGD+V+ +LPD+     +G+ A  VESVKAA+DIY+P++GEI+ VN  L DTP++IN+ P++EGWI++++VSD +E++ LMS EEY+  +A E
Sbjct:    2 SNTPSDLKYASSHEWARLDGDVVTVGITDHAQEALGDLVYVELPDVGDTVAAGDEAGVVESVKAASDIYAPVSGEIIAVNEALGDTPEIINTDPYNEGWIYKIRVSDVSELDNLMSGEEYDAQVATE 128          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A2T5IZP6_9GAMM (Glycine cleavage system H protein n=1 Tax=Agitococcus lubricus TaxID=1077255 RepID=A0A2T5IZP6_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 6.360e-47
Identity = 68/127 (53.54%), Postives = 102/127 (80.31%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEE 156
            S+ PS+ KY SSHEWA+LEGD+  VGITDHAQ ALGD+VF +LP++     +G+ A  VESVKAA+DIY+P++GE+V +N+ L+DTP++INS P+ EGW+++++VS   E++ L+S++EY++ +A E
Sbjct:    2 SNTPSELKYASSHEWARLEGDIVVVGITDHAQEALGDLVFVELPEVGDTVAAGDEAGVVESVKAASDIYAPVSGEVVAINTALEDTPELINSDPYGEGWMYKIRVSSVEELDDLLSSDEYDEQVAAE 128          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A1Y0I2Y2_9GAMM (Glycine cleavage system H protein n=1 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0I2Y2_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 6.570e-47
Identity = 70/121 (57.85%), Postives = 100/121 (82.64%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGD-VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEY 149
            S  P++ KY SSHEWA+LEGD V TVGITDHAQ  LGD+VF +LP+++ E  +G+ A  VESVKAA+DIYSP++G +V VN+ L+++PD++NS P+++GW F+VK+ DP+E+EGL+SA++Y
Sbjct:    2 SQIPNELKYLSSHEWARLEGDGVVTVGITDHAQDLLGDVVFVELPEVDAELSAGDEAGVVESVKAASDIYSPVSGVVVAVNADLEESPDLVNSDPYNDGWFFKVKIKDPSELEGLLSADDY 122          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A507WA26_9GAMM (Glycine cleavage system H protein n=1 Tax=Moraxellaceae bacterium AER2_44_116 TaxID=2591038 RepID=A0A507WA26_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 1.280e-46
Identity = 69/127 (54.33%), Postives = 101/127 (79.53%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEE 156
            S+ P D KY +SHEWA+L+GD+ TVGITDHAQ ALGD+VF +LP++     +G+ A  VESVKAA+DIY+P++GE+V +N  L+DTP++INS P+ EGW++++KVSD  E++ +MSA+EY+  ++ E
Sbjct:    2 SNTPIDLKYATSHEWARLDGDIITVGITDHAQEALGDLVFVELPEVGDSVNAGDEAGVVESVKAASDIYAPVSGEVVEINPALEDTPELINSDPYGEGWMYKIKVSDLTELDDMMSADEYDAQVSAE 128          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A858QZE3_9GAMM (Glycine cleavage system H protein n=1 Tax=Marinobacterium sp. LSUCC0821 TaxID=2668067 RepID=A0A858QZE3_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 1.050e-45
Identity = 73/128 (57.03%), Postives = 99/128 (77.34%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGD-VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEE 156
            S+ PS+ KY SSHEW + EGD V T+GITDHAQ ALGD+VF +LPD+++E  +G+ A  VESVKAA+DIYSPL+G IV +N  L D P+ +NS P+ +GW F++K+SDP+E+E L+SA+EY +   EE
Sbjct:    2 SNAPSELKYVSSHEWIRDEGDGVVTIGITDHAQEALGDVVFVELPDVDSEVSAGDDAGVVESVKAASDIYSPLSGTIVEINEDLADMPETVNSDPYGDGWFFKIKLSDPSELEDLLSADEYLEACEEE 129          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A4R1K284_9GAMM (Glycine cleavage system H protein n=1 Tax=Celerinatantimonas diazotrophica TaxID=412034 RepID=A0A4R1K284_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 1.580e-45
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGD-VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAEEE 157
            S  PSD K+ +SHEW + EGD V T+GI+DHAQ  LGD+VF DLPD++ E   G+  A  ESVKAA+DIYSPL+G +V +N  L+D+P+++NS P+ +GW+FQVK SD  E E L+SA+EY+ T+ EEE
Sbjct:    2 SDIPSDLKFTTSHEWVRKEGDGVYTIGISDHAQELLGDMVFVDLPDVDDEVAGGDDCAVAESVKAASDIYSPLSGTVVAINEELEDSPELLNSDPYGDGWLFQVKASDGEEYEQLLSADEYQDTLEEEE 130          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A2G1ZYI4_9COXI (Glycine cleavage system H protein n=1 Tax=Coxiella sp. (in: Bacteria) TaxID=59288 RepID=A0A2G1ZYI4_9COXI)

HSP 1 Score: 153 bits (386), Expect = 3.980e-45
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 0
Query:   30 SSYPSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEK 151
            S+ P + KY +SHEW K+EGD ATVGITDHAQ  LGDIVF +LP IE EA+ G+ A  VESVK AADIYSP++GE++ +N  L  TP+++N  P+  GW+F+VK+ DP E++  MSAE+Y++
Sbjct:    2 SNCPQELKYTNSHEWIKVEGDEATVGITDHAQGQLGDIVFVELPLIEDEAMQGKEAGVVESVKTAADIYSPISGEVIAINEELTATPEMVNEDPYGNGWLFKVKMLDPGELDQYMSAEQYQE 123          
BLAST of Gvermi12913.t1 vs. uniprot
Match: A0A660VWR9_9BACT (Glycine cleavage system H protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A660VWR9_9BACT)

HSP 1 Score: 152 bits (385), Expect = 5.310e-45
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 0
Query:   33 PSDRKYKSSHEWAKLEGDVATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSPLNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYEKTIAE 155
            P + KY  SHEW ++E  +A VGITDHAQ  LGDIVF +LP+ + E  +GE AATVESVKAA+DIYSPL+G +V VN  L+D+P+++N SP+ +GWIF++++SDP+E++ L+ A+ Y K I E
Sbjct:    3 PKELKYTESHEWVRVEDGIAVVGITDHAQHELGDIVFVELPETDAEYGAGEAAATVESVKAASDIYSPLSGRVVEVNEALEDSPELVNKSPYGDGWIFKIEISDPSELDALLDADAYAKHIGE 125          
The following BLAST results are available for this feature:
BLAST of Gvermi12913.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2M3_9FLOR2.130e-8174.84Glycine cleavage system H protein n=1 Tax=Gracilar... [more]
R7QNQ4_CHOCR1.590e-6769.08Glycine cleavage system H protein n=1 Tax=Chondrus... [more]
A0A4Q7Z909_9GAMM4.090e-5058.27Glycine cleavage system H protein n=1 Tax=Fluviico... [more]
A0A2T5IZP6_9GAMM6.360e-4753.54Glycine cleavage system H protein n=1 Tax=Agitococ... [more]
A0A1Y0I2Y2_9GAMM6.570e-4757.85Glycine cleavage system H protein n=1 Tax=Oleiphil... [more]
A0A507WA26_9GAMM1.280e-4654.33Glycine cleavage system H protein n=1 Tax=Moraxell... [more]
A0A858QZE3_9GAMM1.050e-4557.03Glycine cleavage system H protein n=1 Tax=Marinoba... [more]
A0A4R1K284_9GAMM1.580e-4555.81Glycine cleavage system H protein n=1 Tax=Celerina... [more]
A0A2G1ZYI4_9COXI3.980e-4556.56Glycine cleavage system H protein n=1 Tax=Coxiella... [more]
A0A660VWR9_9BACT5.310e-4555.28Glycine cleavage system H protein n=1 Tax=Planctom... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMTIGR00527TIGR00527coord: 32..156
e-value: 8.7E-45
score: 149.9
IPR033753Glycine cleavage system H-protein/SimiatePFAMPF01597GCV_Hcoord: 36..155
e-value: 2.8E-42
score: 143.5
IPR033753Glycine cleavage system H-protein/SimiateCDDcd06848GCS_Hcoord: 38..132
e-value: 1.42739E-43
score: 137.28
NoneNo IPR availableGENE3D2.40.50.100coord: 20..154
e-value: 1.4E-47
score: 162.7
NoneNo IPR availablePANTHERPTHR11715:SF27GLYCINE CLEAVAGE SYSTEM H PROTEIN 1, MITOCHONDRIAL-RELATEDcoord: 9..157
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 9..157
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 33..154
score: 35.065712
IPR000089Biotin/lipoyl attachmentPROSITEPS50968BIOTINYL_LIPOYLcoord: 51..133
score: 23.131958
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 32..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2070799..2071356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12913.t1Gvermi12913.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 2070799..2071356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12913.t1 ID=Gvermi12913.t1|Name=Gvermi12913.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=158bp
MATILRALPLRRVAKTAPSFARPALARAFSSYPSDRKYKSSHEWAKLEGD
VATVGITDHAQAALGDIVFADLPDIETEAVSGERAATVESVKAAADIYSP
LNGEIVGVNSVLKDTPDVINSSPHDEGWIFQVKVSDPAEIEGLMSAEEYE
KTIAEEE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017453GCV_H_sub
IPR033753GCV_H/Fam206
IPR002930GCV_H
IPR000089Biotin_lipoyl
IPR011053Single_hybrid_motif